Genomic map of Streptococcus phage Str-PAP-1 (NC_028666)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028666
Definition
Streptococcus phage Str-PAP-1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
36595
Host Name
Streptococcus parauberis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
57
%GC
35.28
Number of singletons
6
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009188508.1 NC_028666_p54 hypothetical protein phrog_2164 unknown function unknown function -1 35213 35581
YP_009188478.1 NC_028666_p24 hypothetical protein phrog_1633 unknown function unknown function -1 20227 20592
YP_009188499.1 NC_028666_p45 hypothetical protein phrog_2397 unknown function unknown function -1 32083 32256
YP_009188496.1 NC_028666_p42 hypothetical protein phrog_26340 unknown function unknown function -1 31285 31632
YP_009188472.1 NC_028666_p18 minor tail protein phrog_588 tail fiber protein and host specificity tail -1 11913 14876
YP_009188486.1 NC_028666_p32 capsid protein phrog_10 major head protein head and packaging -1 22870 23775
YP_009188495.1 NC_028666_p41 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 30601 31017
YP_009188488.1 NC_028666_p34 terminase phrog_9 terminase large subunit head and packaging -1 24316 25728
YP_009188500.1 NC_028666_p46 hypothetical protein singleton unknown function unknown function -1 32249 32428
YP_009188489.1 NC_028666_p35 hypothetical protein phrog_15305 unknown function unknown function -1 25904 26140
YP_009188494.1 NC_028666_p40 endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29447 29788
YP_009188509.1 NC_028666_p55 hypothetical protein phrog_4161 unknown function unknown function -1 35574 35816
YP_009188505.1 NC_028666_p51 hypothetical protein singleton unknown function unknown function -1 33447 33650
YP_009188469.1 NC_028666_p15 holin phrog_297 holin lysis -1 9137 9415
YP_009188491.1 NC_028666_p37 portal protein phrog_104 portal protein head and packaging -1 26823 28058
YP_009188470.1 NC_028666_p16 hypothetical protein phrog_1009 unknown function unknown function -1 9412 9765
YP_009188459.1 NC_028666_p5 hypothetical protein phrog_3377 HNH endonuclease DNA, RNA and nucleotide metabolism -1 4345 4773
YP_009188457.1 NC_028666_p3 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 2467 2928
YP_009188473.1 NC_028666_p19 tail component phrog_202 distal tail protein Dit tail -1 14880 16379
YP_009188485.1 NC_028666_p31 hypothetical protein phrog_5279 unknown function unknown function -1 22738 22854
YP_009188464.1 NC_028666_p10 hypothetical protein phrog_1022 unknown function unknown function -1 6571 6696
YP_009188483.1 NC_028666_p29 hypothetical protein phrog_501 head closure Hc1 connector -1 21997 22335
YP_009188468.1 NC_028666_p14 endolysin phrog_8577 endolysin lysis -1 7814 9133
YP_009188481.1 NC_028666_p27 hypothetical protein phrog_123 tail terminator connector -1 21433 21768
YP_009188492.1 NC_028666_p38 hypothetical protein phrog_2862 unknown function unknown function -1 28055 28402
YP_009188502.1 NC_028666_p48 hypothetical protein singleton unknown function unknown function -1 32695 32919
YP_009188490.1 NC_028666_p36 hypothetical protein phrog_2494 minor head protein head and packaging -1 26144 26830
YP_009188475.1 NC_028666_p21 endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 17924 18415
YP_009188466.1 NC_028666_p12 hypothetical protein phrog_11572 unknown function unknown function -1 7021 7194
YP_009188497.1 NC_028666_p43 oxidase singleton unknown function unknown function -1 31629 31844
YP_009188501.1 NC_028666_p47 hypothetical protein phrog_1027 unknown function unknown function -1 32432 32698
YP_009188456.1 NC_028666_p2 hypothetical protein phrog_695 DNA polymerase/primase DNA, RNA and nucleotide metabolism -1 1659 2465
YP_009188467.1 NC_028666_p13 Cro/Cl family transcriptional regulator phrog_3 transcriptional repressor transcription regulation -1 7207 7416
YP_009188498.1 NC_028666_p44 hypothetical protein singleton unknown function unknown function -1 31841 32086
YP_009188493.1 NC_028666_p39 hypothetical protein phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism -1 28496 29335
YP_009188455.1 NC_028666_p1 primase phrog_864 DNA primase DNA, RNA and nucleotide metabolism -1 131 1681
YP_009188477.1 NC_028666_p23 hypothetical protein phrog_6900 tail length tape measure protein tail -1 19741 20226
YP_009188471.1 NC_028666_p17 neck passage structure protein phrog_19519 neck protein connector -1 9778 11901
YP_009188465.1 NC_028666_p11 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 6693 6941
YP_009188484.1 NC_028666_p30 hypothetical protein phrog_137 head-tail adaptor Ad1 connector -1 22298 22720
YP_009188482.1 NC_028666_p28 hypothetical protein phrog_387 neck protein connector -1 21765 22004
YP_009188479.1 NC_028666_p25 hypothetical protein phrog_1526 unknown function unknown function -1 20607 20867
YP_009188480.1 NC_028666_p26 structural protein phrog_117 major tail protein tail -1 20864 21418
YP_009188507.1 NC_028666_p53 hypothetical protein phrog_1485 unknown function unknown function -1 34945 35220
YP_009188510.1 NC_028666_p56 hypothetical protein phrog_1921 unknown function unknown function -1 35813 36172
YP_009188458.1 NC_028666_p4 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 2933 4261
YP_009188462.1 NC_028666_p8 DNA-binding helix-turn-helix protein phrog_3 transcriptional repressor transcription regulation -1 5972 6328
YP_009188460.1 NC_028666_p6 nucleoside triphosphate binding motifs protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 4770 5477
YP_009188506.1 NC_028666_p52 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 33735 34952
YP_009188503.1 NC_028666_p49 hypothetical protein singleton unknown function unknown function -1 32919 33092
YP_009188474.1 NC_028666_p20 tail tape measure protein phrog_58 tail length tape measure protein tail -1 16379 17818
YP_009188504.1 NC_028666_p50 hypothetical protein phrog_20217 unknown function unknown function -1 33089 33454
YP_009188511.1 NC_028666_p57 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 36162 36479
YP_009188487.1 NC_028666_p33 hypothetical protein phrog_233 head scaffolding protein head and packaging -1 23781 24359
YP_009188461.1 NC_028666_p7 hypothetical protein phrog_4084 unknown function unknown function -1 5464 5745
YP_009188463.1 NC_028666_p9 hypothetical protein phrog_8688 unknown function unknown function -1 6329 6574
YP_009188476.1 NC_028666_p22 endonuclease phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism -1 18783 19403