Genomic map of Pseudomonas phage vB_PaeS_PM105 (NC_028667)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028667
Definition
Pseudomonas phage vB_PaeS_PM105.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Beetrevirus; Pseudomonas virus PM105.
DB of origin
REFSEQ
Length
39593
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
63.09
Number of singletons
1
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009188542.1 NC_028667_p31 terminase, large subunit phrog_2 terminase large subunit head and packaging 1 15901 17604
YP_009188531.1 NC_028667_p20 repressor protein phrog_8 transcriptional regulator transcription regulation 1 11008 11400
YP_009188561.1 NC_028667_p49 FAD/FMN-containing dehydrogenase phrog_778 tail assembly protein tail 1 34347 35165
YP_009188559.1 NC_028667_p47 hypothetical protein phrog_687 structural protein head and packaging 1 31728 32651
YP_009188554.1 NC_028667_p43 tail sheath protein phrog_807 major tail protein with Ig-like domain tail 1 25428 26180
YP_009188522.1 NC_028667_p11 transposase B subunit phrog_296 DNA transposition protein integration and excision -1 4452 5621
YP_009188533.1 NC_028667_p22 hypothetical protein phrog_35734 unknown function unknown function -1 11679 12578
YP_009188514.1 NC_028667_p3 hypothetical protein phrog_5249 unknown function unknown function -1 1036 1503
YP_009188519.1 NC_028667_p8 hypothetical protein phrog_6574 unknown function unknown function -1 3196 3807
YP_009188513.1 NC_028667_p2 hypothetical protein similar to mu GemA phrog_286 unknown function unknown function -1 486 1049
YP_009188524.1 NC_028667_p13 hypothetical protein phrog_1748 unknown function unknown function -1 7404 8360
YP_009188560.1 NC_028667_p48 hypothetical protein phrog_1082 tail assembly protein tail 1 32654 34360
YP_009188526.1 NC_028667_p15 hypothetical protein phrog_6525 unknown function unknown function -1 8714 8974
YP_009188534.2 NC_028667_p23 holin protein phrog_1528 holin lysis 1 12752 13048
YP_009188516.1 NC_028667_p5 hypothetical protein phrog_421 unknown function unknown function -1 1696 2385
YP_009188544.1 NC_028667_p33 head morphogenesis protein phrog_220 minor head protein and DNA pilot head and packaging 1 19082 20332
YP_009188515.1 NC_028667_p4 hypothetical protein phrog_3223 unknown function unknown function -1 1503 1694
YP_009188538.1 NC_028667_p27 Rz lysis protein phrog_1403 Rz-like spanin lysis 1 14016 14627
YP_009188512.1 NC_028667_p1 mor transcriptional regulator phrog_532 late transcriptional activator transcription regulation -1 124 483
YP_009188552.1 NC_028667_p41 hypothetical protein phrog_209 portal protein head and packaging 1 24763 25218
YP_009188543.1 NC_028667_p32 portal protein phrog_113 portal protein head and packaging 1 17604 19082
YP_009188532.1 NC_028667_p21 hypothetical protein phrog_33280 unknown function unknown function 1 11420 11623
YP_009188517.1 NC_028667_p6 hypothetical protein phrog_846 unknown function unknown function -1 2387 3010
YP_009188562.1 NC_028667_p50 hypothetical protein phrog_1180 tail assembly chaperone tail 1 35182 35412
YP_009188564.1 NC_028667_p52 hypothetical protein phrog_1101 tail protein tail 1 35626 37836
YP_009188528.1 NC_028667_p17 hypothetical protein singleton unknown function unknown function -1 9581 10261
YP_009188539.1 NC_028667_p28 lipoprotein protein phrog_462 lipoprotein other 1 14631 15020
YP_009188553.1 NC_028667_p42 hypothetical protein phrog_3357 unknown function unknown function 1 25215 25424
YP_009188537.1 NC_028667_p26 hypothetical protein phrog_6410 unknown function unknown function 1 13832 14029
YP_009188549.1 NC_028667_p38 hypothetical protein phrog_21052 unknown function unknown function 1 23724 23918
YP_009188546.1 NC_028667_p35 protease protein phrog_976 head maturation protease head and packaging 1 21117 22355
YP_009188535.1 NC_028667_p24 hypothetical protein phrog_5479 unknown function unknown function 1 13051 13209
YP_009188527.1 NC_028667_p16 hypothetical protein phrog_101 CII-like transcriptional activator transcription regulation -1 8967 9455
YP_009188530.1 NC_028667_p19 hypothetical protein phrog_925 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 10654 10863
YP_009188550.1 NC_028667_p39 hypothetical protein phrog_717 unknown function unknown function 1 23918 24244
YP_009188548.1 NC_028667_p37 capsid protein phrog_1005 major head protein head and packaging 1 22748 23677
YP_009188545.1 NC_028667_p34 virion morphogenesis protein phrog_26 tail completion or Neck1 protein connector 1 20329 20898
YP_009188547.1 NC_028667_p36 hypothetical protein phrog_673 head scaffolding protein head and packaging 1 22359 22736
YP_009188540.1 NC_028667_p29 hypothetical protein phrog_436 unknown function unknown function 1 15010 15318
YP_009188563.1 NC_028667_p51 hypothetical protein phrog_1196 tail assembly chaperone tail 1 35409 35639
YP_009188567.1 NC_028667_p55 hypothetical protein phrog_2687 unknown function unknown function 1 38977 39198
YP_009188523.1 NC_028667_p12 transposase A subunit phrog_310 transposase integration and excision -1 5621 7399
YP_009188566.1 NC_028667_p54 hypothetical protein phrog_2398 unknown function unknown function 1 38678 38980
YP_009188529.1 NC_028667_p18 hypothetical protein phrog_23931 unknown function unknown function 1 10288 10608
YP_009188518.1 NC_028667_p7 hypothetical protein phrog_4446 unknown function unknown function -1 3003 3203
YP_009188541.1 NC_028667_p30 terminase, small subunit phrog_426 terminase small subunit head and packaging 1 15324 15899
YP_009188521.1 NC_028667_p10 hypothetical protein phrog_2043 unknown function unknown function -1 4109 4450
YP_009188520.1 NC_028667_p9 hypothetical protein phrog_6655 unknown function unknown function -1 3807 4112
YP_009188551.1 NC_028667_p40 hypothetical protein phrog_195 head-tail adaptor connector 1 24252 24761
YP_009188555.1 NC_028667_p44 hypothetical protein phrog_1442 tail assembly chaperone tail 1 26182 26688
YP_009188558.1 NC_028667_p46 hypothetical protein phrog_687 structural protein head and packaging 1 30766 31725
YP_009188568.1 NC_028667_p56 hypothetical protein phrog_2623 unknown function unknown function 1 39277 39501
YP_009188525.1 NC_028667_p14 Transcriptional regulator, IclR family phrog_1368 transcriptional regulator transcription regulation -1 8418 8717
YP_009188565.1 NC_028667_p53 hypothetical protein phrog_14458 tail fiber protein tail 1 37833 38678
YP_009188536.1 NC_028667_p25 transglycosylase SLT domain protein phrog_669 endolysin lysis 1 13206 13835
YP_009188557.1 NC_028667_p45 tail length tape-measure protein phrog_24 tail length tape measure protein tail 1 26915 30766