Genomic map of Gordonia phage GMA3 (NC_028668)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028668
Definition
Gordonia phage GMA3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Gamtrevirus; Gordonia virus GMA3.
DB of origin
REFSEQ
Length
77779
Host Name
Gordonia malaquae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
104
%GC
51.26
Number of singletons
32
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009188590.1 NC_028668_p22 lysin phrog_13480 endolysin lysis 1 33881 34582
YP_009188605.1 NC_028668_p37 hypothetical protein singleton unknown function unknown function -1 40113 40325
YP_009188665.1 NC_028668_p97 hypothetical protein singleton unknown function unknown function -1 70650 70766
YP_009188624.1 NC_028668_p56 hypothetical protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism -1 48480 49106
YP_009188664.1 NC_028668_p96 hypothetical protein singleton unknown function unknown function -1 69678 70583
YP_009188608.1 NC_028668_p40 hypothetical protein phrog_3848 unknown function unknown function -1 41240 41542
YP_009188635.1 NC_028668_p67 hypothetical protein singleton unknown function unknown function -1 54868 54996
YP_009188586.1 NC_028668_p18 hypothetical protein phrog_1887 tail protein tail 1 27013 28752
YP_009188592.1 NC_028668_p24 hypothetical protein phrog_880 endolysin lysis 1 34939 35589
YP_009188596.1 NC_028668_p28 hypothetical protein phrog_2272 unknown function unknown function 1 36944 37429
YP_009188660.1 NC_028668_p92 hypothetical protein phrog_16548 unknown function unknown function -1 68228 68671
YP_009188645.1 NC_028668_p77 hypothetical protein phrog_32174 unknown function unknown function -1 58541 58870
YP_009188630.1 NC_028668_p62 hypothetical protein singleton unknown function unknown function -1 52079 52285
YP_009188593.1 NC_028668_p25 hypothetical protein phrog_1492 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35593 36075
YP_009188621.1 NC_028668_p53 hypothetical protein phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism -1 46542 47669
YP_009188584.1 NC_028668_p16 tape measure protein phrog_5448 tail length tape measure protein tail 1 14859 24419
YP_009188633.1 NC_028668_p65 hypothetical protein phrog_5686 unknown function unknown function -1 53600 54439
YP_009188609.1 NC_028668_p41 hypothetical protein phrog_7775 unknown function unknown function -1 41529 41789
YP_009188604.1 NC_028668_p36 hypothetical protein singleton unknown function unknown function -1 39826 40110
YP_009188589.1 NC_028668_p21 hypothetical protein phrog_7114 minor tail protein tail 1 33213 33800
YP_009188571.1 NC_028668_p3 hypothetical protein phrog_113 portal protein head and packaging 1 4995 6896
YP_009188649.1 NC_028668_p81 hypothetical protein phrog_18600 DNA binding protein DNA, RNA and nucleotide metabolism -1 60109 60351
YP_009188575.1 NC_028668_p7 major capsid protein phrog_29 major head protein head and packaging 1 8860 10044
YP_009188613.1 NC_028668_p45 hypothetical protein singleton unknown function unknown function -1 44400 44606
YP_009188647.1 NC_028668_p79 hypothetical protein phrog_21251 unknown function unknown function -1 59664 59888
YP_009188670.1 NC_028668_p102 hypothetical protein singleton unknown function unknown function -1 75728 76318
YP_009188576.1 NC_028668_p8 hypothetical protein phrog_15701 unknown function unknown function 1 10068 10358
YP_009188668.1 NC_028668_p100 hypothetical protein phrog_5311 helicase DNA, RNA and nucleotide metabolism -1 73141 75102
YP_009188610.1 NC_028668_p42 hypothetical protein phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 41794 42519
YP_009188611.1 NC_028668_p43 hypothetical protein phrog_12343 unknown function unknown function -1 42516 42854
YP_009188619.1 NC_028668_p51 hypothetical protein singleton unknown function unknown function -1 46067 46372
YP_009188636.1 NC_028668_p68 hypothetical protein singleton unknown function unknown function -1 54993 55214
YP_009188625.1 NC_028668_p57 hypothetical protein phrog_10045 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 49106 49348
YP_009188579.1 NC_028668_p11 hypothetical protein phrog_5299 unknown function unknown function 1 11907 12410
YP_009188607.1 NC_028668_p39 hypothetical protein phrog_7609 unknown function unknown function -1 40830 41243
YP_009188663.1 NC_028668_p95 hypothetical protein singleton unknown function unknown function -1 69410 69646
YP_009188656.1 NC_028668_p88 ATPase family protein phrog_5424 ATPase other -1 64299 65969
YP_009188671.1 NC_028668_p103 hypothetical protein phrog_5362 DNA primase DNA, RNA and nucleotide metabolism -1 76315 77079
YP_009188638.1 NC_028668_p70 hypothetical protein phrog_17617 unknown function unknown function -1 55533 55790
YP_009188622.1 NC_028668_p54 hypothetical protein singleton unknown function unknown function -1 47666 48004
YP_009188620.1 NC_028668_p52 hypothetical protein phrog_20832 unknown function unknown function -1 46369 46569
YP_009188602.1 NC_028668_p34 hypothetical protein singleton unknown function unknown function -1 39572 39685
YP_009188581.1 NC_028668_p13 major tail protein phrog_290 minor tail protein tail 1 12749 13774
YP_009188634.1 NC_028668_p66 hypothetical protein phrog_15020 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 54429 54884
YP_009188583.1 NC_028668_p15 tail assembly protein phrog_3096 tail assembly chaperone tail 1 13894 14499
YP_009188618.1 NC_028668_p50 hypothetical protein phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 45516 46070
YP_009188582.1 NC_028668_p14 tail assembly protein phrog_3096 tail assembly chaperone tail 1 13894 14756
YP_009188672.1 NC_028668_p104 hypothetical protein singleton unknown function unknown function -1 77179 77301
YP_009188580.1 NC_028668_p12 hypothetical protein phrog_18688 unknown function unknown function 1 12429 12743
YP_009188640.1 NC_028668_p72 hypothetical protein singleton unknown function unknown function -1 55952 56224
YP_009188653.1 NC_028668_p85 hypothetical protein phrog_13626 unknown function unknown function -1 61762 62001
YP_009188628.1 NC_028668_p60 hypothetical protein singleton unknown function unknown function -1 51248 51466
YP_009188637.1 NC_028668_p69 hypothetical protein singleton unknown function unknown function -1 55207 55536
YP_009188572.1 NC_028668_p4 hypothetical protein phrog_30241 unknown function unknown function 1 6899 7189
YP_009188574.1 NC_028668_p6 hypothetical protein phrog_5455 head decoration head and packaging 1 8376 8843
YP_009188594.1 NC_028668_p26 lysin phrog_18341 peptidase other 1 36068 36415
YP_009188617.1 NC_028668_p49 hypothetical protein phrog_14812 unknown function unknown function -1 45224 45505
YP_009188629.1 NC_028668_p61 hypothetical protein phrog_16415 unknown function unknown function -1 51469 51882
YP_009188606.1 NC_028668_p38 hypothetical protein phrog_3301 pyrophosphatase other -1 40325 40837
YP_009188597.1 NC_028668_p29 hypothetical protein phrog_5552 membrane protein moron, auxiliary metabolic gene and host takeover 1 37413 37865
YP_009188585.1 NC_028668_p17 hypothetical protein phrog_5287 minor tail protein tail 1 24422 27004
YP_009188658.1 NC_028668_p90 hypothetical protein singleton unknown function unknown function -1 66406 66882
YP_009188614.1 NC_028668_p46 hypothetical protein phrog_10015 unknown function unknown function -1 44610 44762
YP_009188588.1 NC_028668_p20 hypothetical protein phrog_32311 unknown function unknown function 1 31495 33216
YP_009188587.1 NC_028668_p19 hypothetical protein phrog_346 minor tail protein tail 1 28749 31493
YP_009188646.1 NC_028668_p78 hypothetical protein phrog_5406 unknown function unknown function -1 58867 59571
YP_009188627.1 NC_028668_p59 hypothetical protein phrog_16754 unknown function unknown function -1 50871 51248
YP_009188631.1 NC_028668_p63 hypothetical protein phrog_14234 unknown function unknown function -1 52397 53080
YP_009188654.1 NC_028668_p86 hypothetical protein singleton unknown function unknown function -1 61991 62260
YP_009188650.1 NC_028668_p82 hypothetical protein singleton unknown function unknown function -1 60344 60877
YP_009188577.1 NC_028668_p9 hypothetical protein phrog_195 head-tail adaptor connector 1 10402 11406
YP_009188651.1 NC_028668_p83 hypothetical protein phrog_15480 methyltransferase other -1 60883 61623
YP_009188623.1 NC_028668_p55 hypothetical protein phrog_289 GTP-binding domain other -1 48010 48480
YP_009188615.1 NC_028668_p47 hypothetical protein singleton unknown function unknown function -1 44762 44971
YP_009188600.1 NC_028668_p32 hypothetical protein phrog_102 endolysin lysis 1 38590 39348
YP_009188626.1 NC_028668_p58 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 49351 50868
YP_009188570.1 NC_028668_p2 large terminase subunit phrog_2 terminase large subunit head and packaging 1 1740 4886
YP_009188644.1 NC_028668_p76 hypothetical protein singleton unknown function unknown function -1 57695 58531
YP_009188573.1 NC_028668_p5 hypothetical protein phrog_976 head maturation protease head and packaging 1 7211 8362
YP_009188662.1 NC_028668_p94 hypothetical protein singleton unknown function unknown function -1 69177 69422
YP_009188648.1 NC_028668_p80 hypothetical protein phrog_16893 unknown function unknown function -1 59888 60112
YP_009188666.1 NC_028668_p98 hypothetical protein singleton unknown function unknown function -1 71182 71544
YP_009188669.1 NC_028668_p101 hypothetical protein phrog_5558 Lar-like restriction alleviation protein moron, auxiliary metabolic gene and host takeover -1 75099 75464
YP_009188612.1 NC_028668_p44 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43209 44399
YP_009188591.1 NC_028668_p23 hypothetical protein phrog_18568 unknown function unknown function 1 34586 34939
YP_009188652.1 NC_028668_p84 hypothetical protein singleton unknown function unknown function -1 61626 61793
YP_009188603.1 NC_028668_p35 hypothetical protein singleton unknown function unknown function -1 39682 39822
YP_009188667.1 NC_028668_p99 hypothetical protein singleton unknown function unknown function -1 72890 73144
YP_009188632.1 NC_028668_p64 hypothetical protein singleton unknown function unknown function -1 53329 53586
YP_009188659.1 NC_028668_p91 hypothetical protein phrog_15295 unknown function unknown function -1 67333 68085
YP_009188578.1 NC_028668_p10 hypothetical protein phrog_26 tail completion or Neck1 protein connector 1 11406 11906
YP_009188642.1 NC_028668_p74 hypothetical protein singleton unknown function unknown function -1 56641 56823
YP_009188643.1 NC_028668_p75 integrase phrog_1 integrase integration and excision -1 56823 57620
YP_009188595.1 NC_028668_p27 holin phrog_565 holin lysis 1 36415 36849
YP_009188641.1 NC_028668_p73 hypothetical protein singleton unknown function unknown function -1 56241 56648
YP_009188599.1 NC_028668_p31 hypothetical protein phrog_16963 unknown function unknown function 1 38249 38593
YP_009188616.1 NC_028668_p48 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation -1 44973 45185
YP_009188655.1 NC_028668_p87 von Willebrand factor protein phrog_5298 cobalamin biosynthesis protein moron, auxiliary metabolic gene and host takeover -1 62260 64299
YP_009188569.1 NC_028668_p1 small terminase subunit phrog_16015 terminase small subunit head and packaging 1 105 1739
YP_009188601.1 NC_028668_p33 hypothetical protein singleton unknown function unknown function -1 39394 39585
YP_009188657.1 NC_028668_p89 hypothetical protein singleton unknown function unknown function -1 66035 66172
YP_009188639.1 NC_028668_p71 hypothetical protein phrog_26737 unknown function unknown function -1 55777 55950
YP_009188661.1 NC_028668_p93 hypothetical protein phrog_15017 unknown function unknown function -1 68717 69091
YP_009188598.1 NC_028668_p30 hypothetical protein phrog_9090 membrane protein moron, auxiliary metabolic gene and host takeover 1 37862 38239