Genomic map of Staphylococcus phage phiJB (NC_028669)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028669
Definition
Staphylococcus phage phiJB, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
REFSEQ
Length
43012
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
70
%GC
34.72
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009188739.1 NC_028669_p67 tail fiber protein phrog_1125 tail fiber protein tail 1 38864 40036
YP_009188698.1 NC_028669_p26 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12204 12560
YP_009188693.1 NC_028669_p21 DNA replication protein DnaC phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10433 11212
YP_009188692.1 NC_028669_p20 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9653 10423
YP_009188688.1 NC_028669_p16 hypothetical protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 7390 7941
YP_009188703.1 NC_028669_p31 hypothetical protein phrog_1034 unknown function unknown function 1 13771 14079
YP_009188705.1 NC_028669_p33 hypothetical protein phrog_1235 unknown function unknown function 1 14313 14483
YP_009188690.1 NC_028669_p18 hypothetical protein phrog_10049 unknown function unknown function 1 8622 8738
YP_009188676.1 NC_028669_p4 hypothetical protein phrog_87 metallo-protease other -1 2533 2997
YP_009188708.1 NC_028669_p36 hypothetical protein phrog_1122 unknown function unknown function 1 15252 15446
YP_009188678.1 NC_028669_p6 repressor phrog_3 transcriptional repressor transcription regulation 1 3476 3712
YP_009188726.1 NC_028669_p54 major tail protein phrog_238 major tail protein tail 1 24753 25310
YP_009188728.1 NC_028669_p56 hypothetical protein phrog_1404 tail protein tail 1 25928 26212
YP_009188680.1 NC_028669_p8 hypothetical protein phrog_4989 unknown function unknown function -1 4006 4488
YP_009188741.1 NC_028669_p69 holin phrog_263 holin lysis 1 40493 40795
YP_009188681.1 NC_028669_p9 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 4548 5297
YP_009188683.1 NC_028669_p11 hypothetical protein phrog_534 DNA binding protein DNA, RNA and nucleotide metabolism 1 5561 5824
YP_009188677.1 NC_028669_p5 repressor phrog_8 transcriptional regulator transcription regulation -1 3010 3324
YP_009188696.1 NC_028669_p24 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11609 12013
YP_009188723.1 NC_028669_p51 SPP1 family head-tail adaptor phrog_25 head closure Hc1 connector 1 23579 23914
YP_009188732.1 NC_028669_p60 hypothetical protein phrog_287 minor tail protein tail 1 32225 34123
YP_009188701.1 NC_028669_p29 hypothetical protein phrog_467 unknown function unknown function 1 13029 13430
YP_009188724.1 NC_028669_p52 head-tail component phrog_5 tail completion or Neck1 protein connector 1 23901 24314
YP_009188718.1 NC_028669_p46 hypothetical protein phrog_2881 dCMP hydroxymethylase DNA, RNA and nucleotide metabolism 1 21232 21438
YP_009188736.1 NC_028669_p64 hypothetical protein phrog_276 unknown function unknown function 1 36541 36840
YP_009188687.1 NC_028669_p15 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 6573 7361
YP_009188733.1 NC_028669_p61 hypothetical protein phrog_257 minor tail protein tail 1 34123 35946
YP_009188697.1 NC_028669_p25 hypothetical protein phrog_299 unknown function unknown function 1 12018 12203
YP_009188738.1 NC_028669_p66 cell wall hydrolase phrog_759 tail associated cell-wall hydrolase other 1 36977 38851
YP_009188730.1 NC_028669_p58 tail component phrog_33 distal tail protein Dit tail 1 29374 30315
YP_009188682.1 NC_028669_p10 hypothetical protein phrog_4309 unknown function unknown function 1 5313 5531
YP_009188712.1 NC_028669_p40 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation 1 16251 16424
YP_009188714.1 NC_028669_p42 terminase small subunit phrog_1595 terminase small subunit head and packaging 1 17177 17671
YP_009188727.1 NC_028669_p55 hypothetical protein phrog_183 tail chaperone protein tail 1 25377 25883
YP_009188679.1 NC_028669_p7 hypothetical protein phrog_1534 unknown function unknown function 1 3726 3905
YP_009188731.1 NC_028669_p59 hypothetical protein phrog_663 minor head protein head and packaging 1 30326 32212
YP_009188713.1 NC_028669_p41 hypothetical protein phrog_1058 unknown function unknown function 1 16425 16826
YP_009188729.1 NC_028669_p57 tape measure protein phrog_58 tail length tape measure protein tail 1 26216 29359
YP_009188709.1 NC_028669_p37 hypothetical protein phrog_1616 unknown function unknown function 1 15443 15646
YP_009188742.1 NC_028669_p70 amidase phrog_489 endolysin lysis 1 40807 42261
YP_009188719.1 NC_028669_p47 hypothetical protein phrog_172 head scaffolding protein head and packaging 1 21541 22125
YP_009188689.1 NC_028669_p17 hypothetical protein phrog_398 unknown function unknown function 1 7954 8625
YP_009188673.1 NC_028669_p1 integrase phrog_1 integrase integration and excision -1 94 1299
YP_009188737.1 NC_028669_p65 hypothetical protein singleton unknown function unknown function 1 36855 36917
YP_009188721.1 NC_028669_p49 hypothetical protein phrog_2406 unknown function unknown function 1 23068 23211
YP_009188704.1 NC_028669_p32 hypothetical protein phrog_266 unknown function unknown function 1 14072 14326
YP_009188702.1 NC_028669_p30 hypothetical protein phrog_98 unknown function unknown function 1 13427 13774
YP_009188686.1 NC_028669_p14 hypothetical protein phrog_946 unknown function unknown function 1 6359 6580
YP_009188735.1 NC_028669_p63 hypothetical protein phrog_134 unknown function unknown function 1 36324 36500
YP_009188706.1 NC_028669_p34 2-deoxyuridine 5-triphosphate nucleotidohydrolase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14476 15012
YP_009188695.1 NC_028669_p23 hypothetical protein phrog_433 unknown function unknown function 1 11377 11598
YP_009188710.1 NC_028669_p38 hypothetical protein phrog_555 unknown function unknown function 1 15639 15875
YP_009188734.1 NC_028669_p62 hypothetical protein phrog_300 tail fiber protein tail 1 35946 36323
YP_009188685.1 NC_028669_p13 hypothetical protein phrog_401 unknown function unknown function 1 6089 6349
YP_009188720.1 NC_028669_p48 major capsid protein phrog_10 major head protein head and packaging 1 22142 23056
YP_009188717.1 NC_028669_p45 head morphogenesis protein phrog_115 minor head protein head and packaging 1 20277 21230
YP_009188684.1 NC_028669_p12 hypothetical protein phrog_369 unknown function unknown function 1 5836 5997
YP_009188675.1 NC_028669_p3 hypothetical protein phrog_2039 unknown function unknown function -1 1569 2471
YP_009188707.1 NC_028669_p35 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15049 15255
YP_009188694.1 NC_028669_p22 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11206 11364
YP_009188691.1 NC_028669_p19 hypothetical protein phrog_2232 unknown function unknown function -1 8731 9588
YP_009188674.1 NC_028669_p2 excisionase phrog_2033 excisionase integration and excision 1 1410 1589
YP_009188715.1 NC_028669_p43 terminase large subunit phrog_2 terminase large subunit head and packaging 1 17664 18887
YP_009188699.1 NC_028669_p27 hypothetical protein phrog_258 virulence associated other 1 12564 12806
YP_009188700.1 NC_028669_p28 hypothetical protein phrog_1241 unknown function unknown function 1 12820 13026
YP_009188725.1 NC_028669_p53 minor tail protein phrog_176 tail terminator connector 1 24327 24752
YP_009188711.1 NC_028669_p39 hypothetical protein phrog_301 secreted protein other 1 15868 16254
YP_009188722.1 NC_028669_p50 DNA packaging protein phrog_1161 head-tail adaptor connector 1 23217 23567
YP_009188740.1 NC_028669_p68 hypothetical protein phrog_1262 unknown function unknown function 1 40042 40437
YP_009188716.1 NC_028669_p44 SPP1 family portal protein phrog_64 portal protein head and packaging 1 18884 20308