| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028678 |
Definition |
Mycobacterium phage Cabrinians, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56669 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
61.2 |
Number of singletons |
3 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009189725.1 | NC_028678_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2276 | 3598 |
| YP_009189737.1 | NC_028678_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13011 | 14720 |
| YP_009189805.1 | NC_028678_p83 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 49686 | 49865 |
| YP_009189773.1 | NC_028678_p51 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36795 | 36992 |
| YP_009189823.1 | NC_028678_p101 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 56202 | 56528 |
| YP_009189802.1 | NC_028678_p80 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48755 | 49126 |
| YP_009189762.1 | NC_028678_p40 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31255 | 31377 |
| YP_009189763.1 | NC_028678_p41 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31377 | 31499 |
| YP_009189753.1 | NC_028678_p31 | lysin B | phrog_102 | endolysin | lysis | 1 | 27775 | 28776 |
| YP_009189768.1 | NC_028678_p46 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34676 | 35122 |
| YP_009189741.1 | NC_028678_p19 | D-ala-D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19947 | 21836 |
| YP_009189820.1 | NC_028678_p98 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53939 | 54289 |
| YP_009189814.1 | NC_028678_p92 | hypothetical protein | phrog_14508 | unknown function | unknown function | 1 | 52507 | 52629 |
| YP_009189791.1 | NC_028678_p69 | hypothetical protein | phrog_7443 | unknown function | unknown function | 1 | 45124 | 45345 |
| YP_009189812.1 | NC_028678_p90 | hypothetical protein | singleton | unknown function | unknown function | 1 | 51962 | 52174 |
| YP_009189758.1 | NC_028678_p36 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30538 | 30759 |
| YP_009189800.1 | NC_028678_p78 | hypothetical protein | phrog_1573 | DNA methyltransferase | other | 1 | 48130 | 48555 |
| YP_009189806.1 | NC_028678_p84 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 49865 | 50002 |
| YP_009189807.1 | NC_028678_p85 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 49999 | 50172 |
| YP_009189789.1 | NC_028678_p67 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 42834 | 44174 |
| YP_009189732.1 | NC_028678_p10 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 7087 | 7491 |
| YP_009189819.1 | NC_028678_p97 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 53761 | 53922 |
| YP_009189785.1 | NC_028678_p63 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40810 | 41043 |
| YP_009189727.1 | NC_028678_p5 | scaffolding protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4427 | 5020 |
| YP_009189764.1 | NC_028678_p42 | transposase | phrog_506 | transposase | integration and excision | -1 | 31507 | 32844 |
| YP_009189783.1 | NC_028678_p61 | helix-turn-helix DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40293 | 40658 |
| YP_009189723.1 | NC_028678_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009189821.1 | NC_028678_p99 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54289 | 55374 |
| YP_009189797.1 | NC_028678_p75 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 47298 | 47489 |
| YP_009189757.1 | NC_028678_p35 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29633 | 30454 |
| YP_009189746.1 | NC_028678_p24 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 24448 | 25272 |
| YP_009189818.1 | NC_028678_p96 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53526 | 53768 |
| YP_009189751.1 | NC_028678_p29 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26274 | 26507 |
| YP_009189778.1 | NC_028678_p56 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38417 | 38695 |
| YP_009189726.1 | NC_028678_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3585 | 4340 |
| YP_009189782.1 | NC_028678_p60 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 40012 | 40296 |
| YP_009189790.1 | NC_028678_p68 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 44177 | 45127 |
| YP_009189752.1 | NC_028678_p30 | lysin A | phrog_700 | endolysin | lysis | 1 | 26504 | 27775 |
| YP_009189766.1 | NC_028678_p44 | hypothetical protein | phrog_25457 | unknown function | unknown function | 1 | 32901 | 33053 |
| YP_009189796.1 | NC_028678_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46927 | 47301 |
| YP_009189788.1 | NC_028678_p66 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42475 | 42837 |
| YP_009189781.1 | NC_028678_p59 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39530 | 40015 |
| YP_009189784.1 | NC_028678_p62 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40658 | 40810 |
| YP_009189738.1 | NC_028678_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14807 | 16516 |
| YP_009189770.1 | NC_028678_p48 | transcriptional repressor | phrog_2104 | unknown function | unknown function | 1 | 35999 | 36358 |
| YP_009189780.1 | NC_028678_p58 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 39039 | 39533 |
| YP_009189745.1 | NC_028678_p23 | minor tail protein | phrog_2012 | minor tail protein | tail | 1 | 23813 | 24451 |
| YP_009189756.1 | NC_028678_p34 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29413 | 29646 |
| YP_009189777.1 | NC_028678_p55 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37690 | 38337 |
| YP_009189809.1 | NC_028678_p87 | hypothetical protein | phrog_6194 | unknown function | unknown function | 1 | 50614 | 50691 |
| YP_009189734.1 | NC_028678_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8529 | 9465 |
| YP_009189724.1 | NC_028678_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 572 | 2209 |
| YP_009189739.1 | NC_028678_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16571 | 17401 |
| YP_009189817.1 | NC_028678_p95 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53116 | 53529 |
| YP_009189740.1 | NC_028678_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17398 | 19950 |
| YP_009189811.1 | NC_028678_p89 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51250 | 51921 |
| YP_009189804.1 | NC_028678_p82 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 49498 | 49689 |
| YP_009189761.1 | NC_028678_p39 | hypothetical protein | phrog_7480 | unknown function | unknown function | -1 | 31052 | 31258 |
| YP_009189822.1 | NC_028678_p100 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 55579 | 56202 |
| YP_009189759.1 | NC_028678_p37 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30752 | 30844 |
| YP_009189813.1 | NC_028678_p91 | hypothetical protein | phrog_13974 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 52208 | 52510 |
| YP_009189755.1 | NC_028678_p33 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29015 | 29389 |
| YP_009189765.1 | NC_028678_p43 | hypothetical protein | phrog_31335 | unknown function | unknown function | -1 | 32738 | 32902 |
| YP_009189731.1 | NC_028678_p9 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6801 | 7097 |
| YP_009189728.1 | NC_028678_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5039 | 5860 |
| YP_009189772.1 | NC_028678_p50 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 36706 | 36798 |
| YP_009189747.1 | NC_028678_p25 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25278 | 25475 |
| YP_009189749.1 | NC_028678_p27 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25927 | 26076 |
| YP_009189776.1 | NC_028678_p54 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37505 | 37693 |
| YP_009189816.1 | NC_028678_p94 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52919 | 53119 |
| YP_009189798.1 | NC_028678_p76 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 47559 | 47939 |
| YP_009189769.1 | NC_028678_p47 | XRE family transcriptional regulator | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35386 | 36126 |
| YP_009189729.1 | NC_028678_p7 | head-to-tail connector | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5869 | 6438 |
| YP_009189767.1 | NC_028678_p45 | integrase | phrog_1 | integrase | integration and excision | 1 | 33298 | 34599 |
| YP_009189750.1 | NC_028678_p28 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 26073 | 26207 |
| YP_009189795.1 | NC_028678_p73 | hypothetical protein | phrog_8064 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 46340 | 46903 |
| YP_009189779.1 | NC_028678_p57 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38692 | 39039 |
| YP_009189754.1 | NC_028678_p32 | holin | phrog_443 | holin | lysis | 1 | 28785 | 29018 |
| YP_009189786.1 | NC_028678_p64 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 41040 | 41504 |
| YP_009189760.1 | NC_028678_p38 | hypothetical protein | phrog_10622 | unknown function | unknown function | -1 | 30913 | 31059 |
| YP_009189792.1 | NC_028678_p70 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 45342 | 45491 |
| YP_009189736.1 | NC_028678_p14 | tape measure | phrog_1942 | tail length tape measure protein | tail | 1 | 9483 | 13010 |
| YP_009189787.1 | NC_028678_p65 | RecA | phrog_1366 | unknown function | unknown function | 1 | 41501 | 42478 |
| YP_009189771.1 | NC_028678_p49 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36419 | 36709 |
| YP_009189799.1 | NC_028678_p77 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47939 | 48133 |
| YP_009189733.1 | NC_028678_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7601 | 8410 |
| YP_009189793.1 | NC_028678_p71 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 45488 | 45640 |
| YP_009189744.1 | NC_028678_p22 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23546 | 23800 |
| YP_009189803.1 | NC_028678_p81 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 49289 | 49501 |
| YP_009189801.1 | NC_028678_p79 | hypothetical protein | phrog_9921 | unknown function | unknown function | 1 | 48555 | 48647 |
| YP_009189742.1 | NC_028678_p20 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21836 | 23038 |
| YP_009189774.1 | NC_028678_p52 | hypothetical protein | phrog_13720 | unknown function | unknown function | 1 | 37033 | 37227 |
| YP_009189748.1 | NC_028678_p26 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25624 | 25920 |
| YP_009189810.1 | NC_028678_p88 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 50726 | 51253 |
| YP_009189815.1 | NC_028678_p93 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 52638 | 52919 |
| YP_009189794.1 | NC_028678_p72 | GIY-YIG nuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45786 | 46340 |
| YP_009189743.1 | NC_028678_p21 | minor tail protein | phrog_240 | head protein | head and packaging | 1 | 23062 | 23403 |
| YP_009189730.1 | NC_028678_p8 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6435 | 6764 |
| YP_009189775.1 | NC_028678_p53 | hypothetical protein | phrog_12427 | unknown function | unknown function | 1 | 37224 | 37508 |
| YP_009189808.1 | NC_028678_p86 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 50285 | 50617 |
| YP_009189735.1 | NC_028678_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8529 | 9080 |