Genomic map of Mycobacterium phage Cabrinians (NC_028678)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028678
Definition
Mycobacterium phage Cabrinians, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
56669
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
101
%GC
61.2
Number of singletons
3
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009189725.1 NC_028678_p3 portal protein phrog_104 portal protein head and packaging 1 2276 3598
YP_009189737.1 NC_028678_p15 minor tail protein phrog_106 minor tail protein tail 1 13011 14720
YP_009189805.1 NC_028678_p83 hypothetical protein phrog_1091 unknown function unknown function 1 49686 49865
YP_009189773.1 NC_028678_p51 Xis phrog_66 excisionase and transcriptional regulator integration and excision 1 36795 36992
YP_009189823.1 NC_028678_p101 HNH endonuclease phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 56202 56528
YP_009189802.1 NC_028678_p80 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48755 49126
YP_009189762.1 NC_028678_p40 hypothetical protein phrog_3693 unknown function unknown function -1 31255 31377
YP_009189763.1 NC_028678_p41 hypothetical protein phrog_2437 unknown function unknown function -1 31377 31499
YP_009189753.1 NC_028678_p31 lysin B phrog_102 endolysin lysis 1 27775 28776
YP_009189768.1 NC_028678_p46 hypothetical protein phrog_1948 unknown function unknown function -1 34676 35122
YP_009189741.1 NC_028678_p19 D-ala-D-ala carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 19947 21836
YP_009189820.1 NC_028678_p98 hypothetical protein singleton unknown function unknown function 1 53939 54289
YP_009189814.1 NC_028678_p92 hypothetical protein phrog_14508 unknown function unknown function 1 52507 52629
YP_009189791.1 NC_028678_p69 hypothetical protein phrog_7443 unknown function unknown function 1 45124 45345
YP_009189812.1 NC_028678_p90 hypothetical protein singleton unknown function unknown function 1 51962 52174
YP_009189758.1 NC_028678_p36 hypothetical protein phrog_1791 unknown function unknown function 1 30538 30759
YP_009189800.1 NC_028678_p78 hypothetical protein phrog_1573 DNA methyltransferase other 1 48130 48555
YP_009189806.1 NC_028678_p84 hypothetical protein phrog_1545 unknown function unknown function 1 49865 50002
YP_009189807.1 NC_028678_p85 hypothetical protein phrog_5186 unknown function unknown function 1 49999 50172
YP_009189789.1 NC_028678_p67 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 42834 44174
YP_009189732.1 NC_028678_p10 head-to-tail connector phrog_813 head-tail adaptor connector 1 7087 7491
YP_009189819.1 NC_028678_p97 hypothetical protein phrog_2057 unknown function unknown function 1 53761 53922
YP_009189785.1 NC_028678_p63 hypothetical protein phrog_1834 unknown function unknown function 1 40810 41043
YP_009189727.1 NC_028678_p5 scaffolding protein phrog_2592 head scaffolding protein head and packaging 1 4427 5020
YP_009189764.1 NC_028678_p42 transposase phrog_506 transposase integration and excision -1 31507 32844
YP_009189783.1 NC_028678_p61 helix-turn-helix DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 40293 40658
YP_009189723.1 NC_028678_p1 terminase small subunit phrog_226 minor tail protein tail 1 109 564
YP_009189821.1 NC_028678_p99 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54289 55374
YP_009189797.1 NC_028678_p75 hypothetical protein phrog_2080 unknown function unknown function 1 47298 47489
YP_009189757.1 NC_028678_p35 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29633 30454
YP_009189746.1 NC_028678_p24 minor tail protein phrog_754 minor tail protein tail 1 24448 25272
YP_009189818.1 NC_028678_p96 hypothetical protein phrog_1385 unknown function unknown function 1 53526 53768
YP_009189751.1 NC_028678_p29 hypothetical protein phrog_747 unknown function unknown function 1 26274 26507
YP_009189778.1 NC_028678_p56 hypothetical protein phrog_1849 unknown function unknown function 1 38417 38695
YP_009189726.1 NC_028678_p4 capsid maturation protease phrog_1522 head maturation protease head and packaging 1 3585 4340
YP_009189782.1 NC_028678_p60 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 40012 40296
YP_009189790.1 NC_028678_p68 DNA methylase phrog_67 DNA methyltransferase other 1 44177 45127
YP_009189752.1 NC_028678_p30 lysin A phrog_700 endolysin lysis 1 26504 27775
YP_009189766.1 NC_028678_p44 hypothetical protein phrog_25457 unknown function unknown function 1 32901 33053
YP_009189796.1 NC_028678_p74 hypothetical protein singleton unknown function unknown function 1 46927 47301
YP_009189788.1 NC_028678_p66 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 42475 42837
YP_009189781.1 NC_028678_p59 hypothetical protein phrog_2096 unknown function unknown function 1 39530 40015
YP_009189784.1 NC_028678_p62 hypothetical protein phrog_2078 unknown function unknown function 1 40658 40810
YP_009189738.1 NC_028678_p16 minor tail protein phrog_110 minor tail protein tail 1 14807 16516
YP_009189770.1 NC_028678_p48 transcriptional repressor phrog_2104 unknown function unknown function 1 35999 36358
YP_009189780.1 NC_028678_p58 WhiB phrog_1333 unknown function unknown function 1 39039 39533
YP_009189745.1 NC_028678_p23 minor tail protein phrog_2012 minor tail protein tail 1 23813 24451
YP_009189756.1 NC_028678_p34 hypothetical protein phrog_2004 unknown function unknown function 1 29413 29646
YP_009189777.1 NC_028678_p55 hypothetical protein phrog_1797 unknown function unknown function 1 37690 38337
YP_009189809.1 NC_028678_p87 hypothetical protein phrog_6194 unknown function unknown function 1 50614 50691
YP_009189734.1 NC_028678_p12 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8529 9465
YP_009189724.1 NC_028678_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 572 2209
YP_009189739.1 NC_028678_p17 minor tail protein phrog_732 minor tail protein tail 1 16571 17401
YP_009189817.1 NC_028678_p95 hypothetical protein phrog_1186 unknown function unknown function 1 53116 53529
YP_009189740.1 NC_028678_p18 minor tail protein phrog_346 minor tail protein tail 1 17398 19950
YP_009189811.1 NC_028678_p89 hypothetical protein phrog_1467 unknown function unknown function 1 51250 51921
YP_009189804.1 NC_028678_p82 hypothetical protein phrog_1901 unknown function unknown function 1 49498 49689
YP_009189761.1 NC_028678_p39 hypothetical protein phrog_7480 unknown function unknown function -1 31052 31258
YP_009189822.1 NC_028678_p100 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 55579 56202
YP_009189759.1 NC_028678_p37 hypothetical protein phrog_1839 unknown function unknown function 1 30752 30844
YP_009189813.1 NC_028678_p91 hypothetical protein phrog_13974 membrane protein moron, auxiliary metabolic gene and host takeover 1 52208 52510
YP_009189755.1 NC_028678_p33 hypothetical protein phrog_404 minor tail protein tail 1 29015 29389
YP_009189765.1 NC_028678_p43 hypothetical protein phrog_31335 unknown function unknown function -1 32738 32902
YP_009189731.1 NC_028678_p9 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6801 7097
YP_009189728.1 NC_028678_p6 major capsid protein phrog_267 major head protein head and packaging 1 5039 5860
YP_009189772.1 NC_028678_p50 hypothetical protein phrog_5563 unknown function unknown function 1 36706 36798
YP_009189747.1 NC_028678_p25 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25278 25475
YP_009189749.1 NC_028678_p27 hypothetical protein phrog_932 unknown function unknown function 1 25927 26076
YP_009189776.1 NC_028678_p54 hypothetical protein phrog_1816 unknown function unknown function 1 37505 37693
YP_009189816.1 NC_028678_p94 hypothetical protein phrog_1694 unknown function unknown function 1 52919 53119
YP_009189798.1 NC_028678_p76 hypothetical protein phrog_6275 unknown function unknown function 1 47559 47939
YP_009189769.1 NC_028678_p47 XRE family transcriptional regulator phrog_2838 transcriptional repressor transcription regulation -1 35386 36126
YP_009189729.1 NC_028678_p7 head-to-tail connector phrog_2377 head-tail adaptor Ad1 connector 1 5869 6438
YP_009189767.1 NC_028678_p45 integrase phrog_1 integrase integration and excision 1 33298 34599
YP_009189750.1 NC_028678_p28 hypothetical protein phrog_1172 unknown function unknown function 1 26073 26207
YP_009189795.1 NC_028678_p73 hypothetical protein phrog_8064 replication initiation protein DNA, RNA and nucleotide metabolism 1 46340 46903
YP_009189779.1 NC_028678_p57 hypothetical protein phrog_658 unknown function unknown function 1 38692 39039
YP_009189754.1 NC_028678_p32 holin phrog_443 holin lysis 1 28785 29018
YP_009189786.1 NC_028678_p64 hypothetical protein phrog_5168 unknown function unknown function 1 41040 41504
YP_009189760.1 NC_028678_p38 hypothetical protein phrog_10622 unknown function unknown function -1 30913 31059
YP_009189792.1 NC_028678_p70 hypothetical protein phrog_2704 unknown function unknown function 1 45342 45491
YP_009189736.1 NC_028678_p14 tape measure phrog_1942 tail length tape measure protein tail 1 9483 13010
YP_009189787.1 NC_028678_p65 RecA phrog_1366 unknown function unknown function 1 41501 42478
YP_009189771.1 NC_028678_p49 hypothetical protein phrog_2025 unknown function unknown function 1 36419 36709
YP_009189799.1 NC_028678_p77 hypothetical protein phrog_1943 unknown function unknown function 1 47939 48133
YP_009189733.1 NC_028678_p11 major tail subunit phrog_476 major tail protein tail 1 7601 8410
YP_009189793.1 NC_028678_p71 hypothetical protein phrog_2070 unknown function unknown function 1 45488 45640
YP_009189744.1 NC_028678_p22 hypothetical protein phrog_2005 minor tail protein tail 1 23546 23800
YP_009189803.1 NC_028678_p81 hypothetical protein phrog_2939 unknown function unknown function 1 49289 49501
YP_009189801.1 NC_028678_p79 hypothetical protein phrog_9921 unknown function unknown function 1 48555 48647
YP_009189742.1 NC_028678_p20 minor tail protein phrog_2106 minor tail protein tail 1 21836 23038
YP_009189774.1 NC_028678_p52 hypothetical protein phrog_13720 unknown function unknown function 1 37033 37227
YP_009189748.1 NC_028678_p26 hypothetical protein phrog_411 unknown function unknown function 1 25624 25920
YP_009189810.1 NC_028678_p88 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 50726 51253
YP_009189815.1 NC_028678_p93 hypothetical protein phrog_419 unknown function unknown function 1 52638 52919
YP_009189794.1 NC_028678_p72 GIY-YIG nuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 45786 46340
YP_009189743.1 NC_028678_p21 minor tail protein phrog_240 head protein head and packaging 1 23062 23403
YP_009189730.1 NC_028678_p8 head-to-tail connector phrog_763 head-tail adaptor connector 1 6435 6764
YP_009189775.1 NC_028678_p53 hypothetical protein phrog_12427 unknown function unknown function 1 37224 37508
YP_009189808.1 NC_028678_p86 hypothetical protein phrog_2278 unknown function unknown function 1 50285 50617
YP_009189735.1 NC_028678_p13 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8529 9080