| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028680 |
Definition |
Mycobacterium phage Pepe, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
50515 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
64 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009189921.1 | NC_028680_p50 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 36804 | 37214 |
| YP_009189884.1 | NC_028680_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9155 | 10597 |
| YP_009189955.1 | NC_028680_p84 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 49494 | 49670 |
| YP_009189879.1 | NC_028680_p8 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4498 | 4758 |
| YP_009189912.1 | NC_028680_p41 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 30766 | 31155 |
| YP_009189922.1 | NC_028680_p51 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37211 | 37732 |
| YP_009189872.1 | NC_028680_p1 | hypothetical protein | phrog_21074 | helicase | DNA, RNA and nucleotide metabolism | 1 | 609 | 863 |
| YP_009189916.1 | NC_028680_p45 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 33802 | 33984 |
| YP_009189911.1 | NC_028680_p40 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 30380 | 30745 |
| YP_009189880.1 | NC_028680_p9 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4766 | 5023 |
| YP_009189937.1 | NC_028680_p66 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41867 | 42697 |
| YP_009189942.1 | NC_028680_p71 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 44679 | 44846 |
| YP_009189908.1 | NC_028680_p37 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 29831 | 30001 |
| YP_009189951.1 | NC_028680_p80 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 47662 | 47901 |
| YP_009189917.1 | NC_028680_p46 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 33981 | 34772 |
| YP_009189873.1 | NC_028680_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 860 | 1165 |
| YP_009189914.1 | NC_028680_p43 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 33053 | 33283 |
| YP_009189940.1 | NC_028680_p69 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 43608 | 44078 |
| YP_009189920.1 | NC_028680_p49 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 36625 | 36807 |
| YP_009189909.1 | NC_028680_p38 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 29998 | 30093 |
| YP_009189938.1 | NC_028680_p67 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 42860 | 43174 |
| YP_009189956.1 | NC_028680_p85 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49731 | 49814 |
| YP_009189907.1 | NC_028680_p36 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 29379 | 29831 |
| YP_009189900.1 | NC_028680_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23823 | 24269 |
| YP_009189957.1 | NC_028680_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 49931 | 50134 |
| YP_009189950.1 | NC_028680_p79 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 47145 | 47300 |
| YP_009189893.1 | NC_028680_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15037 | 15885 |
| YP_009189943.1 | NC_028680_p72 | hypothetical protein | phrog_34690 | unknown function | unknown function | -1 | 44948 | 45559 |
| YP_009189881.1 | NC_028680_p10 | lysin A | phrog_317 | endolysin | lysis | 1 | 5023 | 6492 |
| YP_009189882.1 | NC_028680_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6482 | 7450 |
| YP_009189906.1 | NC_028680_p35 | type I restriction enzyme | phrog_23413 | restriction enzyme I | DNA, RNA and nucleotide metabolism | -1 | 29167 | 29382 |
| YP_009189876.1 | NC_028680_p5 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 2131 | 2442 |
| YP_009189918.1 | NC_028680_p47 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 34765 | 34905 |
| YP_009189930.1 | NC_028680_p59 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 39564 | 39848 |
| YP_009189948.1 | NC_028680_p77 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 46252 | 46401 |
| YP_009189899.1 | NC_028680_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21983 | 23785 |
| YP_009189902.1 | NC_028680_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24610 | 24957 |
| YP_009189932.1 | NC_028680_p61 | DNA B helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40251 | 41072 |
| YP_009189947.1 | NC_028680_p76 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 46102 | 46230 |
| YP_009189892.1 | NC_028680_p21 | head-to-tail connector | phrog_123 | tail terminator | connector | 1 | 14582 | 15028 |
| YP_009189927.1 | NC_028680_p56 | truncated endonuclase VII | phrog_17507 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38569 | 38715 |
| YP_009189924.1 | NC_028680_p53 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38072 | 38233 |
| YP_009189933.1 | NC_028680_p62 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41072 | 41245 |
| YP_009189891.1 | NC_028680_p20 | head-to-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14183 | 14578 |
| YP_009189910.1 | NC_028680_p39 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 30090 | 30383 |
| YP_009189888.1 | NC_028680_p17 | head-to-tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 13136 | 13372 |
| YP_009189939.1 | NC_028680_p68 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 43171 | 43566 |
| YP_009189886.1 | NC_028680_p15 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11534 | 12046 |
| YP_009189887.1 | NC_028680_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12056 | 13063 |
| YP_009189923.1 | NC_028680_p52 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37551 | 38093 |
| YP_009189883.1 | NC_028680_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7470 | 9158 |
| YP_009189896.1 | NC_028680_p25 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 16870 | 19701 |
| YP_009189895.1 | NC_028680_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16055 | 16441 |
| YP_009189953.1 | NC_028680_p82 | hypothetical protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 48431 | 49348 |
| YP_009189889.1 | NC_028680_p18 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13372 | 13821 |
| YP_009189874.1 | NC_028680_p3 | hypothetical protein | phrog_18329 | unknown function | unknown function | 1 | 1162 | 1299 |
| YP_009189931.1 | NC_028680_p60 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39985 | 40251 |
| YP_009189904.1 | NC_028680_p33 | truncated integrase-serine | phrog_95 | integrase | integration and excision | 1 | 27246 | 28529 |
| YP_009189941.1 | NC_028680_p70 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 44383 | 44682 |
| YP_009189897.1 | NC_028680_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19725 | 21782 |
| YP_009189913.1 | NC_028680_p42 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 31229 | 33016 |
| YP_009189885.1 | NC_028680_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10594 | 11475 |
| YP_009189905.1 | NC_028680_p34 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 28904 | 29170 |
| YP_009189946.1 | NC_028680_p75 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45938 | 46105 |
| YP_009189894.1 | NC_028680_p23 | hypothetical protein | phrog_393 | tail assembly chaperone | tail | 1 | 16055 | 16857 |
| YP_009189944.1 | NC_028680_p73 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 45562 | 45753 |
| YP_009189945.1 | NC_028680_p74 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 45750 | 45938 |
| YP_009189915.1 | NC_028680_p44 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33314 | 33805 |
| YP_009189929.1 | NC_028680_p58 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 39344 | 39571 |
| YP_009189903.1 | NC_028680_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24982 | 26835 |
| YP_009189928.1 | NC_028680_p57 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 39023 | 39121 |
| YP_009189935.1 | NC_028680_p64 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41361 | 41654 |
| YP_009189926.1 | NC_028680_p55 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38406 | 38549 |
| YP_009189934.1 | NC_028680_p63 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41242 | 41355 |
| YP_009189875.1 | NC_028680_p4 | tail protein | phrog_226 | minor tail protein | tail | 1 | 1350 | 1784 |
| YP_009189898.1 | NC_028680_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21801 | 21983 |
| YP_009189919.1 | NC_028680_p48 | endonuclease | phrog_221 | metallo-phosphoesterase | other | -1 | 34910 | 36628 |
| YP_009189925.1 | NC_028680_p54 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 38233 | 38409 |
| YP_009189877.1 | NC_028680_p6 | tail protein | phrog_1197 | tail protein | tail | 1 | 2703 | 3773 |
| YP_009189952.1 | NC_028680_p81 | hypothetical protein | phrog_8429 | NifU-like Fe-S cluster assembly protein | moron, auxiliary metabolic gene and host takeover | -1 | 48027 | 48434 |
| YP_009189890.1 | NC_028680_p19 | head-to-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13821 | 14183 |
| YP_009189936.1 | NC_028680_p65 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 41658 | 41840 |
| YP_009189949.1 | NC_028680_p78 | hypothetical protein | phrog_9026 | unknown function | unknown function | -1 | 46398 | 46610 |
| YP_009189954.1 | NC_028680_p83 | hypothetical protein | phrog_14752 | unknown function | unknown function | -1 | 49345 | 49497 |
| YP_009189878.1 | NC_028680_p7 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3783 | 4484 |
| YP_009189901.1 | NC_028680_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 24281 | 24613 |