Genomic map of Mycobacterium phage Pepe (NC_028680)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028680
Definition
Mycobacterium phage Pepe, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
50515
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
64
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009189921.1 NC_028680_p50 hypothetical protein phrog_474 phosphofructokinase other -1 36804 37214
YP_009189884.1 NC_028680_p13 portal protein phrog_104 portal protein head and packaging 1 9155 10597
YP_009189955.1 NC_028680_p84 hypothetical protein phrog_2287 unknown function unknown function -1 49494 49670
YP_009189879.1 NC_028680_p8 hypothetical protein phrog_1718 tail protein tail 1 4498 4758
YP_009189912.1 NC_028680_p41 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 30766 31155
YP_009189922.1 NC_028680_p51 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 37211 37732
YP_009189872.1 NC_028680_p1 hypothetical protein phrog_21074 helicase DNA, RNA and nucleotide metabolism 1 609 863
YP_009189916.1 NC_028680_p45 hypothetical protein phrog_499 unknown function unknown function -1 33802 33984
YP_009189911.1 NC_028680_p40 hypothetical protein phrog_383 unknown function unknown function -1 30380 30745
YP_009189880.1 NC_028680_p9 hypothetical protein phrog_747 unknown function unknown function 1 4766 5023
YP_009189937.1 NC_028680_p66 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 41867 42697
YP_009189942.1 NC_028680_p71 hypothetical protein phrog_1720 unknown function unknown function -1 44679 44846
YP_009189908.1 NC_028680_p37 hypothetical protein phrog_2035 unknown function unknown function -1 29831 30001
YP_009189951.1 NC_028680_p80 hypothetical protein phrog_10288 unknown function unknown function -1 47662 47901
YP_009189917.1 NC_028680_p46 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 33981 34772
YP_009189873.1 NC_028680_p2 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 860 1165
YP_009189914.1 NC_028680_p43 hypothetical protein phrog_1781 unknown function unknown function -1 33053 33283
YP_009189940.1 NC_028680_p69 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 43608 44078
YP_009189920.1 NC_028680_p49 hypothetical protein phrog_1503 unknown function unknown function -1 36625 36807
YP_009189909.1 NC_028680_p38 hypothetical protein phrog_1860 unknown function unknown function -1 29998 30093
YP_009189938.1 NC_028680_p67 hypothetical protein phrog_1584 unknown function unknown function -1 42860 43174
YP_009189956.1 NC_028680_p85 hypothetical protein phrog_2212 unknown function unknown function -1 49731 49814
YP_009189907.1 NC_028680_p36 hypothetical protein phrog_2387 nucleotide kinase other -1 29379 29831
YP_009189900.1 NC_028680_p29 hypothetical protein phrog_352 minor tail protein tail 1 23823 24269
YP_009189957.1 NC_028680_p86 hypothetical protein phrog_828 unknown function unknown function -1 49931 50134
YP_009189950.1 NC_028680_p79 hypothetical protein phrog_2985 unknown function unknown function -1 47145 47300
YP_009189893.1 NC_028680_p22 major tail subunit phrog_117 major tail protein tail 1 15037 15885
YP_009189943.1 NC_028680_p72 hypothetical protein phrog_34690 unknown function unknown function -1 44948 45559
YP_009189881.1 NC_028680_p10 lysin A phrog_317 endolysin lysis 1 5023 6492
YP_009189882.1 NC_028680_p11 lysin B phrog_102 endolysin lysis 1 6482 7450
YP_009189906.1 NC_028680_p35 type I restriction enzyme phrog_23413 restriction enzyme I DNA, RNA and nucleotide metabolism -1 29167 29382
YP_009189876.1 NC_028680_p5 hypothetical protein phrog_2830 unknown function unknown function 1 2131 2442
YP_009189918.1 NC_028680_p47 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 34765 34905
YP_009189930.1 NC_028680_p59 hypothetical protein phrog_647 unknown function unknown function -1 39564 39848
YP_009189948.1 NC_028680_p77 hypothetical protein phrog_932 unknown function unknown function -1 46252 46401
YP_009189899.1 NC_028680_p28 minor tail protein phrog_110 minor tail protein tail 1 21983 23785
YP_009189902.1 NC_028680_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24610 24957
YP_009189932.1 NC_028680_p61 DNA B helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 40251 41072
YP_009189947.1 NC_028680_p76 hypothetical protein phrog_2093 unknown function unknown function -1 46102 46230
YP_009189892.1 NC_028680_p21 head-to-tail connector phrog_123 tail terminator connector 1 14582 15028
YP_009189927.1 NC_028680_p56 truncated endonuclase VII phrog_17507 endonuclease VII DNA, RNA and nucleotide metabolism -1 38569 38715
YP_009189924.1 NC_028680_p53 hypothetical protein phrog_1783 unknown function unknown function -1 38072 38233
YP_009189933.1 NC_028680_p62 hypothetical protein phrog_2507 unknown function unknown function -1 41072 41245
YP_009189891.1 NC_028680_p20 head-to-tail connector phrog_321 tail completion or Neck1 protein connector 1 14183 14578
YP_009189910.1 NC_028680_p39 hypothetical protein phrog_1971 unknown function unknown function -1 30090 30383
YP_009189888.1 NC_028680_p17 head-to-tail connector phrog_1857 head-tail connector protein connector 1 13136 13372
YP_009189939.1 NC_028680_p68 hypothetical protein phrog_1809 unknown function unknown function -1 43171 43566
YP_009189886.1 NC_028680_p15 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11534 12046
YP_009189887.1 NC_028680_p16 major capsid protein phrog_10 major head protein head and packaging 1 12056 13063
YP_009189923.1 NC_028680_p52 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 37551 38093
YP_009189883.1 NC_028680_p12 terminase phrog_9 terminase large subunit head and packaging 1 7470 9158
YP_009189896.1 NC_028680_p25 tape measure phrog_305 tail length tape measure protein tail 1 16870 19701
YP_009189895.1 NC_028680_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 16055 16441
YP_009189953.1 NC_028680_p82 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 48431 49348
YP_009189889.1 NC_028680_p18 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 13372 13821
YP_009189874.1 NC_028680_p3 hypothetical protein phrog_18329 unknown function unknown function 1 1162 1299
YP_009189931.1 NC_028680_p60 NrdH-like protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 39985 40251
YP_009189904.1 NC_028680_p33 truncated integrase-serine phrog_95 integrase integration and excision 1 27246 28529
YP_009189941.1 NC_028680_p70 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 44383 44682
YP_009189897.1 NC_028680_p26 minor tail protein phrog_106 minor tail protein tail 1 19725 21782
YP_009189913.1 NC_028680_p42 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 31229 33016
YP_009189885.1 NC_028680_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10594 11475
YP_009189905.1 NC_028680_p34 hypothetical protein phrog_1966 unknown function unknown function -1 28904 29170
YP_009189946.1 NC_028680_p75 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 45938 46105
YP_009189894.1 NC_028680_p23 hypothetical protein phrog_393 tail assembly chaperone tail 1 16055 16857
YP_009189944.1 NC_028680_p73 hypothetical protein phrog_1387 unknown function unknown function -1 45562 45753
YP_009189945.1 NC_028680_p74 hypothetical protein phrog_1155 unknown function unknown function -1 45750 45938
YP_009189915.1 NC_028680_p44 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 33314 33805
YP_009189929.1 NC_028680_p58 hypothetical protein phrog_722 unknown function unknown function -1 39344 39571
YP_009189903.1 NC_028680_p32 minor tail protein phrog_346 minor tail protein tail 1 24982 26835
YP_009189928.1 NC_028680_p57 hypothetical protein phrog_1019 unknown function unknown function -1 39023 39121
YP_009189935.1 NC_028680_p64 hypothetical protein phrog_520 unknown function unknown function -1 41361 41654
YP_009189926.1 NC_028680_p55 hypothetical protein phrog_397 unknown function unknown function -1 38406 38549
YP_009189934.1 NC_028680_p63 hypothetical protein phrog_1705 unknown function unknown function -1 41242 41355
YP_009189875.1 NC_028680_p4 tail protein phrog_226 minor tail protein tail 1 1350 1784
YP_009189898.1 NC_028680_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21801 21983
YP_009189919.1 NC_028680_p48 endonuclease phrog_221 metallo-phosphoesterase other -1 34910 36628
YP_009189925.1 NC_028680_p54 hypothetical protein phrog_11567 unknown function unknown function -1 38233 38409
YP_009189877.1 NC_028680_p6 tail protein phrog_1197 tail protein tail 1 2703 3773
YP_009189952.1 NC_028680_p81 hypothetical protein phrog_8429 NifU-like Fe-S cluster assembly protein moron, auxiliary metabolic gene and host takeover -1 48027 48434
YP_009189890.1 NC_028680_p19 head-to-tail connector phrog_320 head closure Hc1 connector 1 13821 14183
YP_009189936.1 NC_028680_p65 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 41658 41840
YP_009189949.1 NC_028680_p78 hypothetical protein phrog_9026 unknown function unknown function -1 46398 46610
YP_009189954.1 NC_028680_p83 hypothetical protein phrog_14752 unknown function unknown function -1 49345 49497
YP_009189878.1 NC_028680_p7 hypothetical protein phrog_553 minor tail protein tail 1 3783 4484
YP_009189901.1 NC_028680_p30 hypothetical protein phrog_981 minor tail protein tail 1 24281 24613