Genomic map of Shigella phage Ss-VASD (NC_028685)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028685
Definition
Shigella phage Ss-VASD, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Sepvirinae; Oslovirus.
DB of origin
REFSEQ
Length
62851
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
74
%GC
50.07
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009190537.1 NC_028685_p30 repressor CI phrog_4 transcriptional repressor transcription regulation -1 18985 19698
YP_009190580.1 NC_028685_p73 hypothetical protein phrog_616 unknown function unknown function 1 53954 62335
YP_009190565.1 NC_028685_p58 hypothetical protein phrog_482 unknown function unknown function 1 40961 41422
YP_009190547.1 NC_028685_p40 Stx1 B subunit phrog_851 Shiga toxin subunit B moron, auxiliary metabolic gene and host takeover 1 26483 26752
YP_009190526.1 NC_028685_p19 hypothetical protein phrog_204 unknown function unknown function -1 10597 10944
YP_009190512.1 NC_028685_p5 hypothetical protein phrog_1888 unknown function unknown function -1 2407 2796
YP_009190571.1 NC_028685_p64 tail fiber protein phrog_496 tail fiber protein tail 1 47308 48576
YP_009190541.1 NC_028685_p34 DNA primase phrog_510 DNA primase DNA, RNA and nucleotide metabolism 1 22410 23381
YP_009190552.1 NC_028685_p45 1,4-beta-N-acetylmuramidase phrog_7 endolysin lysis 1 30096 30629
YP_009190539.1 NC_028685_p32 hypothetical protein phrog_1347 unknown function unknown function 1 20529 20906
YP_009190533.1 NC_028685_p26 antitermination phrog_1760 anti-repressor transcription regulation -1 14138 14812
YP_009190546.1 NC_028685_p39 Stx1 A subunit phrog_866 Shiga toxin subunit A moron, auxiliary metabolic gene and host takeover 1 25526 26473
YP_009190578.1 NC_028685_p71 hypothetical protein phrog_594 unknown function unknown function 1 52357 52608
YP_009190560.1 NC_028685_p53 hypothetical protein phrog_2 terminase large subunit head and packaging 1 34213 35919
YP_009190519.1 NC_028685_p12 hypothetical protein phrog_631 unknown function unknown function -1 6559 7116
YP_009190551.1 NC_028685_p44 holin lysis protein S phrog_20 holin lysis 1 29876 30091
YP_009190570.1 NC_028685_p63 hypothetical protein phrog_511 internal virion protein head and packaging 1 45620 47311
YP_009190545.1 NC_028685_p38 antiterminator Q phrog_79 anti-termination protein Q-like transcription regulation 1 24585 25019
YP_009190534.1 NC_028685_p27 hypothetical protein phrog_995 transcriptional regulator transcription regulation -1 15068 15853
YP_009190530.1 NC_028685_p23 hypothetical protein phrog_1050 gam-like host nuclease inhibitor moron, auxiliary metabolic gene and host takeover -1 13260 13541
YP_009190510.1 NC_028685_p3 hypothetical protein phrog_285 unknown function unknown function -1 1792 2043
YP_009190523.1 NC_028685_p16 hypothetical protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 8206 9021
YP_009190562.1 NC_028685_p55 hypothetical protein phrog_479 unknown function unknown function 1 38221 39228
YP_009190540.1 NC_028685_p33 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 20900 22420
YP_009190568.1 NC_028685_p61 collagen triple helix repeat protein phrog_366 tail fiber protein tail 1 42616 44853
YP_009190563.1 NC_028685_p56 hypothetical protein phrog_334 major head protein head and packaging 1 39252 40466
YP_009190553.1 NC_028685_p46 hypothetical protein phrog_34797 unknown function unknown function 1 30598 30714
YP_009190577.1 NC_028685_p70 hypothetical protein phrog_596 unknown function unknown function 1 51901 52347
YP_009190572.1 NC_028685_p65 outer membrane protein phrog_557 outer membrane protein other 1 48591 48869
YP_009190566.1 NC_028685_p59 hypothetical protein phrog_437 virion structural protein head and packaging 1 41406 41969
YP_009190548.1 NC_028685_p41 hypothetical protein phrog_23494 unknown function unknown function 1 26983 27102
YP_009190573.1 NC_028685_p66 hypothetical protein phrog_425 membrane associated protein moron, auxiliary metabolic gene and host takeover 1 48875 49492
YP_009190574.1 NC_028685_p67 attachment invasion locus protein precursor phrog_108 Lom outer membrane protein other 1 49583 50317
YP_009190517.1 NC_028685_p10 hypothetical protein singleton unknown function unknown function -1 4993 5175
YP_009190581.1 NC_028685_p74 hypothetical protein phrog_17575 unknown function unknown function -1 62401 62517
YP_009190538.1 NC_028685_p31 hypothetical protein phrog_35 transcriptional repressor transcription regulation 1 19758 19997
YP_009190564.1 NC_028685_p57 hypothetical protein phrog_486 virion structural protein head and packaging 1 40521 40910
YP_009190520.1 NC_028685_p13 hypothetical protein phrog_250 unknown function unknown function -1 7076 7777
YP_009190542.1 NC_028685_p35 hypothetical protein phrog_319 NinB/ Orf homologous recombination mediator DNA, RNA and nucleotide metabolism 1 23381 23830
YP_009190549.1 NC_028685_p42 mobile element protein phrog_143 unknown function unknown function 1 27257 29197
YP_009190575.1 NC_028685_p68 hypothetical protein phrog_610 unknown function unknown function 1 50745 51146
YP_009190514.1 NC_028685_p7 transcriptional activator phrog_359 DNA methyltransferase other -1 3004 3630
YP_009190543.1 NC_028685_p36 recombination endonuclease phrog_171 NinG/ Rap DNA junction specific endonuclease DNA, RNA and nucleotide metabolism 1 23832 24401
YP_009190557.1 NC_028685_p50 hypothetical protein phrog_875 unknown function unknown function 1 32769 33026
YP_009190518.1 NC_028685_p11 EaA protein phrog_60 unknown function unknown function -1 5633 6562
YP_009190554.1 NC_028685_p47 hypothetical protein phrog_524 anti-repressor Ant transcription regulation 1 30904 31470
YP_009190513.1 NC_028685_p6 hypothetical protein phrog_292 unknown function unknown function -1 2832 3026
YP_009190509.1 NC_028685_p2 excisionase phrog_23175 excisionase integration and excision -1 1462 1590
YP_009190556.1 NC_028685_p49 hypothetical protein phrog_129 transcriptional regulator transcription regulation 1 32206 32772
YP_009190511.1 NC_028685_p4 hypothetical protein phrog_29320 unknown function unknown function -1 2006 2410
YP_009190561.1 NC_028685_p54 portal protein phrog_156 portal protein head and packaging 1 35919 38063
YP_009190550.1 NC_028685_p43 hypothetical protein phrog_8301 unknown function unknown function 1 29379 29798
YP_009190527.1 NC_028685_p20 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 11020 11607
YP_009190525.1 NC_028685_p18 hypothetical protein phrog_210 unknown function unknown function -1 9712 10533
YP_009190535.1 NC_028685_p28 restriction endonuclease phrog_1639 restriction endonuclease DNA, RNA and nucleotide metabolism -1 16471 17424
YP_009190508.1 NC_028685_p1 integrase phrog_1 integrase integration and excision -1 99 1409
YP_009190524.1 NC_028685_p17 hypothetical protein phrog_1363 unknown function unknown function -1 9192 9635
YP_009190529.1 NC_028685_p22 recombinase phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 12293 13243
YP_009190515.1 NC_028685_p8 adenine methylase phrog_1680 unknown function unknown function -1 3627 4058
YP_009190567.1 NC_028685_p60 hypothetical protein phrog_399 structural protein head and packaging 1 41969 42619
YP_009190522.1 NC_028685_p15 hypothetical protein phrog_1226 unknown function unknown function -1 7973 8179
YP_009190555.1 NC_028685_p48 outer membrane lytic protein Rz phrog_13 Rz-like spanin lysis 1 31627 32094
YP_009190532.1 NC_028685_p25 kilR phrog_294 Kil protein for bacterial septation inhibition other -1 13855 14067
YP_009190528.1 NC_028685_p21 endonuclease phrog_149 exonuclease DNA, RNA and nucleotide metabolism -1 11607 12296
YP_009190531.1 NC_028685_p24 hypothetical protein phrog_1635 unknown function unknown function -1 13562 13783
YP_009190544.1 NC_028685_p37 hypothetical protein phrog_268 unknown function unknown function 1 24398 24592
YP_009190521.1 NC_028685_p14 hypothetical protein phrog_1344 unknown function unknown function -1 7774 8013
YP_009190536.1 NC_028685_p29 modification methylase BsuBI phrog_1600 DNA methyltransferase other -1 17421 18860
YP_009190579.1 NC_028685_p72 hypothetical protein phrog_601 unknown function unknown function 1 52619 53884
YP_009190559.1 NC_028685_p52 DNA packaging protein phrog_370 terminase small subunit head and packaging 1 33426 34232
YP_009190576.1 NC_028685_p69 hypothetical protein phrog_611 unknown function unknown function 1 51242 51898
YP_009190516.1 NC_028685_p9 antirepressor phrog_377 anti-repressor Ant transcription regulation -1 4114 4815
YP_009190569.1 NC_028685_p62 tail fiber adhesin phrog_1121 tail fiber adhesin tail 1 44940 45452
YP_009190558.1 NC_028685_p51 hypothetical protein phrog_26210 unknown function unknown function 1 33257 33370