| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028694 |
Definition |
Propionibacterium phage PA1-14, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pahexavirus; unclassified Pahexavirus. |
DB of origin |
REFSEQ |
Length |
29407 |
Host Name |
Propionibacterium acnes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
45 |
%GC |
53.85 |
Number of singletons |
2 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009191358.1 | NC_028694_p13 | hypothetical protein | phrog_3166 | unknown function | unknown function | 1 | 8218 | 8505 |
| YP_009191364.1 | NC_028694_p19 | tail fiber protein | phrog_1806 | collagen like minor tail | tail | 1 | 14538 | 15344 |
| YP_009191362.1 | NC_028694_p17 | hypothetical protein | phrog_1910 | lectin | other | 1 | 13417 | 14178 |
| YP_009191355.1 | NC_028694_p10 | hypothetical protein | phrog_1892 | minor tail protein | tail | 1 | 6741 | 7112 |
| YP_009191359.1 | NC_028694_p14 | tail length tape-measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8513 | 11278 |
| YP_009191368.1 | NC_028694_p23 | hypothetical protein | phrog_1729 | unknown function | unknown function | -1 | 17254 | 17652 |
| YP_009191353.1 | NC_028694_p8 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 6100 | 6447 |
| YP_009191380.1 | NC_028694_p35 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 24311 | 24664 |
| YP_009191361.1 | NC_028694_p16 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 12243 | 13400 |
| YP_009191374.1 | NC_028694_p29 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 20333 | 21004 |
| YP_009191384.1 | NC_028694_p39 | hypothetical protein | phrog_7707 | unknown function | unknown function | -1 | 25858 | 26118 |
| YP_009191350.1 | NC_028694_p5 | capsid and scaffold protein | phrog_1879 | head scaffolding protein | head and packaging | 1 | 4078 | 4638 |
| YP_009191351.1 | NC_028694_p6 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4645 | 5592 |
| YP_009191349.1 | NC_028694_p4 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 3213 | 3968 |
| YP_009191381.1 | NC_028694_p36 | hypothetical protein | phrog_1937 | unknown function | unknown function | -1 | 24770 | 24970 |
| YP_009191385.1 | NC_028694_p40 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26246 | 26557 |
| YP_009191354.1 | NC_028694_p9 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 6454 | 6744 |
| YP_009191386.1 | NC_028694_p41 | hypothetical protein | phrog_919 | unknown function | unknown function | -1 | 26594 | 26902 |
| YP_009191377.1 | NC_028694_p32 | hypothetical protein | phrog_1288 | unknown function | unknown function | -1 | 22462 | 22920 |
| YP_009191378.1 | NC_028694_p33 | hypothetical protein | phrog_1890 | unknown function | unknown function | -1 | 22969 | 23478 |
| YP_009191390.1 | NC_028694_p45 | endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29043 | 29345 |
| YP_009191352.1 | NC_028694_p7 | hypothetical protein | phrog_1290 | head-tail adaptor | connector | 1 | 5637 | 6098 |
| YP_009191347.1 | NC_028694_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 373 | 1884 |
| YP_009191348.1 | NC_028694_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 1881 | 3206 |
| YP_009191369.1 | NC_028694_p24 | hypothetical protein | phrog_1947 | unknown function | unknown function | -1 | 17656 | 17940 |
| YP_009191372.1 | NC_028694_p27 | hypothetical protein | phrog_5969 | unknown function | unknown function | -1 | 19454 | 19699 |
| YP_009191383.1 | NC_028694_p38 | hypothetical protein | phrog_1908 | unknown function | unknown function | -1 | 25217 | 25750 |
| YP_009191388.1 | NC_028694_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27090 | 27365 |
| YP_009191373.1 | NC_028694_p28 | hypothetical protein | phrog_1881 | unknown function | unknown function | -1 | 19724 | 20281 |
| YP_009191367.1 | NC_028694_p22 | hypothetical protein | phrog_2092 | unknown function | unknown function | -1 | 16737 | 17285 |
| YP_009191387.1 | NC_028694_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26892 | 27077 |
| YP_009191375.1 | NC_028694_p30 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 21202 | 21558 |
| YP_009191356.1 | NC_028694_p11 | major tail protein | phrog_117 | major tail protein | tail | 1 | 7153 | 7794 |
| YP_009191379.1 | NC_028694_p34 | exonuclease | phrog_1870 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 23370 | 24311 |
| YP_009191346.1 | NC_028694_p1 | terminase small subunit | phrog_1897 | terminase small subunit | head and packaging | 1 | 32 | 373 |
| YP_009191389.1 | NC_028694_p44 | hypothetical protein | phrog_7333 | unknown function | unknown function | 1 | 28864 | 28995 |
| YP_009191360.1 | NC_028694_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 11294 | 12235 |
| YP_009191363.1 | NC_028694_p18 | hypothetical protein | phrog_1958 | minor tail protein | tail | 1 | 14281 | 14538 |
| YP_009191365.1 | NC_028694_p20 | hypothetical protein | phrog_670 | endolysin | lysis | 1 | 15386 | 16240 |
| YP_009191370.1 | NC_028694_p25 | hypothetical protein | phrog_1340 | unknown function | unknown function | -1 | 17955 | 18275 |
| YP_009191371.1 | NC_028694_p26 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 18285 | 19331 |
| YP_009191357.1 | NC_028694_p12 | hypothetical protein | phrog_1927 | tail assembly chaperone | tail | 1 | 7823 | 8119 |
| YP_009191382.1 | NC_028694_p37 | hypothetical protein | phrog_1884 | unknown function | unknown function | -1 | 24967 | 25194 |
| YP_009191366.1 | NC_028694_p21 | hypothetical protein | phrog_443 | holin | lysis | 1 | 16253 | 16654 |
| YP_009191376.1 | NC_028694_p31 | hypothetical protein | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 21468 | 22421 |