| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028697 |
Definition |
Streptococcus phage A25, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
33900 |
Host Name |
Streptococcus pyogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
38.44 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009191518.1 | NC_028697_p11 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7018 | 7338 |
| YP_009191515.1 | NC_028697_p8 | hypothetical protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 4029 | 4487 |
| YP_009191548.1 | NC_028697_p41 | structural protein | phrog_372 | tail protein | tail | 1 | 28745 | 30610 |
| YP_009191511.1 | NC_028697_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1407 | 1517 |
| YP_009191553.1 | NC_028697_p46 | lysin | phrog_3861 | amidase | lysis | 1 | 32087 | 33532 |
| YP_009191550.1 | NC_028697_p43 | hypothetical protein | phrog_1567 | unknown function | unknown function | 1 | 31055 | 31282 |
| YP_009191546.1 | NC_028697_p39 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 24966 | 26468 |
| YP_009191536.1 | NC_028697_p29 | major capsid protein | phrog_840 | major head protein | head and packaging | 1 | 17208 | 18086 |
| YP_009191552.1 | NC_028697_p45 | class III holin | phrog_608 | holin | lysis | 1 | 31750 | 32085 |
| YP_009191533.1 | NC_028697_p26 | portal protein | phrog_533 | portal protein | head and packaging | 1 | 13751 | 15328 |
| YP_009191540.1 | NC_028697_p33 | capsid protein | phrog_556 | minor head protein | head and packaging | 1 | 19085 | 19444 |
| YP_009191524.1 | NC_028697_p17 | hypothetical protein | phrog_884 | unknown function | unknown function | 1 | 8973 | 9323 |
| YP_009191521.1 | NC_028697_p14 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 7920 | 8204 |
| YP_009191528.1 | NC_028697_p21 | hypothetical protein | phrog_3511 | unknown function | unknown function | 1 | 10269 | 10649 |
| YP_009191547.1 | NC_028697_p40 | minor protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 26472 | 28733 |
| YP_009191538.1 | NC_028697_p31 | hypothetical protein | phrog_541 | head-tail adaptor | connector | 1 | 18341 | 18769 |
| YP_009191539.1 | NC_028697_p32 | minor capsid protein | phrog_793 | head-tail adaptor | connector | 1 | 18753 | 19085 |
| YP_009191530.1 | NC_028697_p23 | hypothetical protein | phrog_9479 | unknown function | unknown function | 1 | 11384 | 11767 |
| YP_009191519.1 | NC_028697_p12 | hypothetical protein | phrog_1921 | unknown function | unknown function | 1 | 7322 | 7678 |
| YP_009191529.1 | NC_028697_p22 | hypothetical protein | phrog_8680 | unknown function | unknown function | 1 | 10704 | 11387 |
| YP_009191544.1 | NC_028697_p37 | hypothetical protein | phrog_706 | unknown function | unknown function | 1 | 20697 | 21281 |
| YP_009191535.1 | NC_028697_p28 | scaffolding protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 16626 | 17189 |
| YP_009191526.1 | NC_028697_p19 | hypothetical protein | phrog_18515 | unknown function | unknown function | 1 | 9639 | 9869 |
| YP_009191531.1 | NC_028697_p24 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | 1 | 11960 | 12439 |
| YP_009191549.1 | NC_028697_p42 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 30592 | 31089 |
| YP_009191520.1 | NC_028697_p13 | hypothetical protein | phrog_4161 | unknown function | unknown function | 1 | 7675 | 7926 |
| YP_009191525.1 | NC_028697_p18 | hypothetical protein | phrog_33550 | unknown function | unknown function | 1 | 9323 | 9646 |
| YP_009191523.1 | NC_028697_p16 | hypothetical protein | phrog_9246 | unknown function | unknown function | 1 | 8480 | 8761 |
| YP_009191516.1 | NC_028697_p9 | hypothetical protein | phrog_695 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 4490 | 5302 |
| YP_009191541.1 | NC_028697_p34 | capsid protein | phrog_913 | minor head protein | head and packaging | 1 | 19444 | 19863 |
| YP_009191514.1 | NC_028697_p7 | hypothetical protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 2784 | 4013 |
| YP_009191551.1 | NC_028697_p44 | class I holin | phrog_199 | holin | lysis | 1 | 31284 | 31757 |
| YP_009191543.1 | NC_028697_p36 | hypothetical protein | phrog_1061 | unknown function | unknown function | 1 | 20329 | 20697 |
| YP_009191537.1 | NC_028697_p30 | hypothetical protein | phrog_2910 | unknown function | unknown function | 1 | 18097 | 18333 |
| YP_009191510.1 | NC_028697_p3 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | 1 | 978 | 1292 |
| YP_009191517.1 | NC_028697_p10 | DNA primase | phrog_864 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 5292 | 6773 |
| YP_009191534.1 | NC_028697_p27 | minor capsid protein | phrog_581 | minor head protein | head and packaging | 1 | 15331 | 16479 |
| YP_009191542.1 | NC_028697_p35 | major tail shaft protein | phrog_820 | major tail protein | tail | 1 | 19856 | 20314 |
| YP_009191527.1 | NC_028697_p20 | endodeoxyribonuclease rusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9866 | 10276 |
| YP_009191532.1 | NC_028697_p25 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 12426 | 13739 |
| YP_009191545.1 | NC_028697_p38 | tape measure protein | phrog_1204 | tail protein | tail | 1 | 21262 | 24969 |
| YP_009191508.1 | NC_028697_p1 | cro family anti-repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 233 | 451 |
| YP_009191512.1 | NC_028697_p5 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 1519 | 2001 |
| YP_009191522.1 | NC_028697_p15 | hypothetical protein | phrog_5030 | unknown function | unknown function | 1 | 8201 | 8470 |
| YP_009191509.1 | NC_028697_p2 | hypothetical protein | phrog_668 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 546 | 797 |
| YP_009191513.1 | NC_028697_p6 | nucleotide-binding protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 2002 | 2682 |