| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028698 |
Definition |
Salmonella phage f18SE, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus. |
DB of origin |
REFSEQ |
Length |
41868 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
53 |
%GC |
49.79 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009191596.1 | NC_028698_p43 | hypothetical protein | phrog_4684 | unknown function | unknown function | -1 | 35852 | 36007 |
| YP_009191563.1 | NC_028698_p10 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 8284 | 9708 |
| YP_009191605.1 | NC_028698_p52 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 40123 | 40308 |
| YP_009191603.1 | NC_028698_p50 | EaA protein | phrog_924 | unknown function | unknown function | -1 | 38862 | 39053 |
| YP_009191557.1 | NC_028698_p4 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 1885 | 2406 |
| YP_009191593.1 | NC_028698_p40 | terminase small subunit protein | phrog_3064 | terminase | head and packaging | -1 | 34270 | 34815 |
| YP_009191606.1 | NC_028698_p53 | uvsX-like protein | phrog_5169 | unknown function | unknown function | 1 | 40305 | 40538 |
| YP_009191571.1 | NC_028698_p18 | hypothetical protein | phrog_4557 | unknown function | unknown function | -1 | 18751 | 19110 |
| YP_009191577.1 | NC_028698_p24 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 23290 | 23709 |
| YP_009191583.1 | NC_028698_p30 | major tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 25806 | 26156 |
| YP_009191591.1 | NC_028698_p38 | portal protein | phrog_145 | portal protein | head and packaging | -1 | 31530 | 32996 |
| YP_009191601.1 | NC_028698_p48 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 37492 | 37926 |
| YP_009191564.1 | NC_028698_p11 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9705 | 10190 |
| YP_009191594.1 | NC_028698_p41 | hypothetical protein | phrog_10134 | unknown function | unknown function | -1 | 34910 | 35140 |
| YP_009191580.1 | NC_028698_p27 | hypothetical protein | phrog_3614 | unknown function | unknown function | -1 | 24460 | 25065 |
| YP_009191584.1 | NC_028698_p31 | head protein | phrog_4366 | head fiber protein | head and packaging | -1 | 26168 | 26452 |
| YP_009191566.1 | NC_028698_p13 | tailspike protein | phrog_1819 | tail spike protein | tail | -1 | 10433 | 12487 |
| YP_009191598.1 | NC_028698_p45 | lysozyme | phrog_7 | endolysin | lysis | -1 | 36373 | 36861 |
| YP_009191597.1 | NC_028698_p44 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 36004 | 36189 |
| YP_009191586.1 | NC_028698_p33 | scaffold protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 27566 | 28267 |
| YP_009191570.1 | NC_028698_p17 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | -1 | 16425 | 18758 |
| YP_009191572.1 | NC_028698_p19 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 19116 | 19532 |
| YP_009191592.1 | NC_028698_p39 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 33009 | 34280 |
| YP_009191573.1 | NC_028698_p20 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | 1 | 19950 | 21080 |
| YP_009191569.1 | NC_028698_p16 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 15923 | 16423 |
| YP_009191588.1 | NC_028698_p35 | hypothetical protein | phrog_3945 | Hoc-like head decoration | head and packaging | -1 | 29166 | 29624 |
| YP_009191574.1 | NC_028698_p21 | hypothetical protein | phrog_2452 | unknown function | unknown function | 1 | 21077 | 21307 |
| YP_009191567.1 | NC_028698_p14 | tail fiber protein | phrog_469 | tail protein | tail | -1 | 12500 | 15058 |
| YP_009191565.1 | NC_028698_p12 | hypothetical protein | phrog_5915 | unknown function | unknown function | 1 | 10187 | 10348 |
| YP_009191559.1 | NC_028698_p6 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 3908 | 4534 |
| YP_009191595.1 | NC_028698_p42 | hypothetical protein | phrog_1402 | unknown function | unknown function | -1 | 35676 | 35855 |
| YP_009191604.1 | NC_028698_p51 | hypothetical protein | phrog_625 | unknown function | unknown function | -1 | 39050 | 39325 |
| YP_009191578.1 | NC_028698_p25 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 23709 | 24104 |
| YP_009191600.1 | NC_028698_p47 | hypothetical protein | phrog_2359 | holin | lysis | -1 | 37131 | 37457 |
| YP_009191575.1 | NC_028698_p22 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 21421 | 22092 |
| YP_009191590.1 | NC_028698_p37 | hypothetical protein | phrog_6095 | amidase | lysis | 1 | 30847 | 31497 |
| YP_009191558.1 | NC_028698_p5 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 2390 | 3826 |
| YP_009191568.1 | NC_028698_p15 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 15411 | 15926 |
| YP_009191579.1 | NC_028698_p26 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 24101 | 24382 |
| YP_009191585.1 | NC_028698_p32 | major capsid protein | phrog_247 | major head protein | head and packaging | -1 | 26513 | 27562 |
| YP_009191599.1 | NC_028698_p46 | holin-like class I | phrog_2508 | holin | lysis | -1 | 36842 | 37129 |
| YP_009191589.1 | NC_028698_p36 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | -1 | 29627 | 30670 |
| YP_009191560.1 | NC_028698_p7 | DNA polymerase family A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4592 | 7690 |
| YP_009191576.1 | NC_028698_p23 | tail protein | phrog_290 | minor tail protein | tail | -1 | 22121 | 23290 |
| YP_009191555.1 | NC_028698_p2 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 928 | 1146 |
| YP_009191581.1 | NC_028698_p28 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 25068 | 25577 |
| YP_009191587.1 | NC_028698_p34 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | -1 | 28461 | 28847 |
| YP_009191562.1 | NC_028698_p9 | hypothetical protein | phrog_4879 | unknown function | unknown function | 1 | 8096 | 8287 |
| YP_009191554.1 | NC_028698_p1 | primase-helicase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 1 | 913 |
| YP_009191554.1 | NC_028698_p1 | primase-helicase | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | 1 | 40595 | 41868 |
| YP_009191556.1 | NC_028698_p3 | hypothetical protein | phrog_3127 | unknown function | unknown function | 1 | 1280 | 1816 |
| YP_009191561.1 | NC_028698_p8 | restriction endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 7777 | 8064 |
| YP_009191582.1 | NC_028698_p29 | hypothetical protein | phrog_4451 | unknown function | unknown function | -1 | 25581 | 25769 |
| YP_009191602.1 | NC_028698_p49 | hypothetical protein | phrog_4947 | unknown function | unknown function | -1 | 37932 | 38303 |