Genomic map of Salmonella phage f18SE (NC_028698)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028698
Definition
Salmonella phage f18SE, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus.
DB of origin
REFSEQ
Length
41868
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
53
%GC
49.79
Number of singletons
0
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009191596.1 NC_028698_p43 hypothetical protein phrog_4684 unknown function unknown function -1 35852 36007
YP_009191563.1 NC_028698_p10 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 8284 9708
YP_009191605.1 NC_028698_p52 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 40123 40308
YP_009191603.1 NC_028698_p50 EaA protein phrog_924 unknown function unknown function -1 38862 39053
YP_009191557.1 NC_028698_p4 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 1885 2406
YP_009191593.1 NC_028698_p40 terminase small subunit protein phrog_3064 terminase head and packaging -1 34270 34815
YP_009191606.1 NC_028698_p53 uvsX-like protein phrog_5169 unknown function unknown function 1 40305 40538
YP_009191571.1 NC_028698_p18 hypothetical protein phrog_4557 unknown function unknown function -1 18751 19110
YP_009191577.1 NC_028698_p24 hypothetical protein phrog_179 tail terminator connector -1 23290 23709
YP_009191583.1 NC_028698_p30 major tail protein phrog_4069 Hoc-like head decoration head and packaging -1 25806 26156
YP_009191591.1 NC_028698_p38 portal protein phrog_145 portal protein head and packaging -1 31530 32996
YP_009191601.1 NC_028698_p48 hypothetical protein phrog_1040 peptidase HslV family other -1 37492 37926
YP_009191564.1 NC_028698_p11 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9705 10190
YP_009191594.1 NC_028698_p41 hypothetical protein phrog_10134 unknown function unknown function -1 34910 35140
YP_009191580.1 NC_028698_p27 hypothetical protein phrog_3614 unknown function unknown function -1 24460 25065
YP_009191584.1 NC_028698_p31 head protein phrog_4366 head fiber protein head and packaging -1 26168 26452
YP_009191566.1 NC_028698_p13 tailspike protein phrog_1819 tail spike protein tail -1 10433 12487
YP_009191598.1 NC_028698_p45 lysozyme phrog_7 endolysin lysis -1 36373 36861
YP_009191597.1 NC_028698_p44 hypothetical protein phrog_2180 unknown function unknown function -1 36004 36189
YP_009191586.1 NC_028698_p33 scaffold protein phrog_206 head scaffolding protein head and packaging -1 27566 28267
YP_009191570.1 NC_028698_p17 tape measure protein phrog_1538 tail length tape measure protein tail -1 16425 18758
YP_009191572.1 NC_028698_p19 hypothetical protein phrog_313 Tail assembly chaperone tail -1 19116 19532
YP_009191592.1 NC_028698_p39 terminase large subunit phrog_2 terminase large subunit head and packaging -1 33009 34280
YP_009191573.1 NC_028698_p20 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism 1 19950 21080
YP_009191569.1 NC_028698_p16 hypothetical protein phrog_384 virion structural protein head and packaging -1 15923 16423
YP_009191588.1 NC_028698_p35 hypothetical protein phrog_3945 Hoc-like head decoration head and packaging -1 29166 29624
YP_009191574.1 NC_028698_p21 hypothetical protein phrog_2452 unknown function unknown function 1 21077 21307
YP_009191567.1 NC_028698_p14 tail fiber protein phrog_469 tail protein tail -1 12500 15058
YP_009191565.1 NC_028698_p12 hypothetical protein phrog_5915 unknown function unknown function 1 10187 10348
YP_009191559.1 NC_028698_p6 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 3908 4534
YP_009191595.1 NC_028698_p42 hypothetical protein phrog_1402 unknown function unknown function -1 35676 35855
YP_009191604.1 NC_028698_p51 hypothetical protein phrog_625 unknown function unknown function -1 39050 39325
YP_009191578.1 NC_028698_p25 hypothetical protein phrog_169 tail completion or Neck1 protein connector -1 23709 24104
YP_009191600.1 NC_028698_p47 hypothetical protein phrog_2359 holin lysis -1 37131 37457
YP_009191575.1 NC_028698_p22 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation 1 21421 22092
YP_009191590.1 NC_028698_p37 hypothetical protein phrog_6095 amidase lysis 1 30847 31497
YP_009191558.1 NC_028698_p5 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism 1 2390 3826
YP_009191568.1 NC_028698_p15 hypothetical protein phrog_396 minor tail protein tail -1 15411 15926
YP_009191579.1 NC_028698_p26 hypothetical protein phrog_161 head closure Hc1 connector -1 24101 24382
YP_009191585.1 NC_028698_p32 major capsid protein phrog_247 major head protein head and packaging -1 26513 27562
YP_009191599.1 NC_028698_p46 holin-like class I phrog_2508 holin lysis -1 36842 37129
YP_009191589.1 NC_028698_p36 head morphogenesis protein phrog_241 head morphogenesis head and packaging -1 29627 30670
YP_009191560.1 NC_028698_p7 DNA polymerase family A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 4592 7690
YP_009191576.1 NC_028698_p23 tail protein phrog_290 minor tail protein tail -1 22121 23290
YP_009191555.1 NC_028698_p2 hypothetical protein phrog_3 transcriptional repressor transcription regulation -1 928 1146
YP_009191581.1 NC_028698_p28 hypothetical protein phrog_477 head-tail adaptor Ad1 connector -1 25068 25577
YP_009191587.1 NC_028698_p34 hypothetical protein phrog_2536 Rz-like spanin lysis -1 28461 28847
YP_009191562.1 NC_028698_p9 hypothetical protein phrog_4879 unknown function unknown function 1 8096 8287
YP_009191554.1 NC_028698_p1 primase-helicase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 1 913
YP_009191554.1 NC_028698_p1 primase-helicase phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism 1 40595 41868
YP_009191556.1 NC_028698_p3 hypothetical protein phrog_3127 unknown function unknown function 1 1280 1816
YP_009191561.1 NC_028698_p8 restriction endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism 1 7777 8064
YP_009191582.1 NC_028698_p29 hypothetical protein phrog_4451 unknown function unknown function -1 25581 25769
YP_009191602.1 NC_028698_p49 hypothetical protein phrog_4947 unknown function unknown function -1 37932 38303