| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028700 |
Definition |
Streptococcus phage T12, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
37976 |
Host Name |
Streptococcus pyogenes |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
65 |
%GC |
38.1 |
Number of singletons |
8 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009191682.1 | NC_028700_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5653 | 5763 |
| YP_009191691.1 | NC_028700_p22 | endodeoxyribonuclease | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 9822 | 10262 |
| YP_009191707.1 | NC_028700_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17865 | 18140 |
| YP_009191715.1 | NC_028700_p46 | hypothetical protein | phrog_793 | head-tail adaptor | connector | 1 | 21340 | 21651 |
| YP_009191704.1 | NC_028700_p35 | terminase small subunit | phrog_2538 | terminase small subunit | head and packaging | 1 | 14927 | 15307 |
| YP_009191723.1 | NC_028700_p54 | minor tail protein | phrog_588 | tail fiber protein and host specificity | tail | 1 | 27019 | 30459 |
| YP_009191686.1 | NC_028700_p17 | hypothetical protein | phrog_2410 | unknown function | unknown function | 1 | 7769 | 8023 |
| YP_009191673.1 | NC_028700_p4 | cI repressor | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2007 | 2876 |
| YP_009191716.1 | NC_028700_p47 | tail protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21699 | 22043 |
| YP_009191702.1 | NC_028700_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13725 | 13931 |
| YP_009191717.1 | NC_028700_p48 | tail protein | phrog_176 | tail terminator | connector | 1 | 22045 | 22455 |
| YP_009191694.1 | NC_028700_p25 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 10857 | 11093 |
| YP_009191696.1 | NC_028700_p27 | hypothetical protein | phrog_13581 | unknown function | unknown function | 1 | 11545 | 11880 |
| YP_009191706.1 | NC_028700_p37 | SPP1 family portal protein | phrog_64 | portal protein | head and packaging | 1 | 16607 | 17896 |
| YP_009191678.1 | NC_028700_p9 | Cro repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 4688 | 4927 |
| YP_009191710.1 | NC_028700_p41 | scaffold protein | phrog_172 | head scaffolding protein | head and packaging | 1 | 19198 | 19770 |
| YP_009191683.1 | NC_028700_p14 | replication initiator protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 5763 | 6524 |
| YP_009191724.1 | NC_028700_p55 | structural protein | phrog_372 | tail protein | tail | 1 | 30464 | 32326 |
| YP_009191720.1 | NC_028700_p51 | hypothetical protein | phrog_7423 | unknown function | unknown function | 1 | 23277 | 23735 |
| YP_009191692.1 | NC_028700_p23 | hypothetical protein | phrog_1921 | unknown function | unknown function | 1 | 10259 | 10615 |
| YP_009191712.1 | NC_028700_p43 | capsid protein | singleton | unknown function | unknown function | 1 | 20188 | 20679 |
| YP_009191701.1 | NC_028700_p32 | hypothetical protein | phrog_2397 | unknown function | unknown function | 1 | 13438 | 13608 |
| YP_009191674.1 | NC_028700_p5 | transmembrane protein | phrog_2253 | unknown function | unknown function | 1 | 3189 | 3347 |
| YP_009191731.1 | NC_028700_p62 | hypothetical protein | phrog_8309 | unknown function | unknown function | 1 | 34881 | 35654 |
| YP_009191689.1 | NC_028700_p20 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 9194 | 9613 |
| YP_009191671.1 | NC_028700_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1293 | 1418 |
| YP_009191713.1 | NC_028700_p44 | hypothetical protein | phrog_390 | Arc-like repressor | transcription regulation | 1 | 20692 | 20985 |
| YP_009191730.1 | NC_028700_p61 | hypothetical protein | phrog_10272 | unknown function | unknown function | 1 | 34304 | 34870 |
| YP_009191685.1 | NC_028700_p16 | hypothetical protein | phrog_2113 | unknown function | unknown function | 1 | 7432 | 7788 |
| YP_009191670.1 | NC_028700_p1 | site-specific recombinase | phrog_1 | integrase | integration and excision | -1 | 72 | 1196 |
| YP_009191699.1 | NC_028700_p30 | hypothetical protein | phrog_13885 | unknown function | unknown function | 1 | 12648 | 12941 |
| YP_009191695.1 | NC_028700_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11066 | 11542 |
| YP_009191693.1 | NC_028700_p24 | hypothetical protein | phrog_4161 | unknown function | unknown function | 1 | 10612 | 10857 |
| YP_009191680.1 | NC_028700_p11 | hypothetical protein | phrog_5866 | unknown function | unknown function | 1 | 5239 | 5535 |
| YP_009191681.1 | NC_028700_p12 | hypothetical protein | phrog_7329 | unknown function | unknown function | 1 | 5532 | 5669 |
| YP_009191697.1 | NC_028700_p28 | methyltransferase | phrog_954 | DNA methyltransferase | other | 1 | 11883 | 12368 |
| YP_009191688.1 | NC_028700_p19 | single-stranded DNA-binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8527 | 9201 |
| YP_009191709.1 | NC_028700_p40 | hypothetical protein | phrog_903 | unknown function | unknown function | 1 | 18782 | 19048 |
| YP_009191672.1 | NC_028700_p3 | hypothetical protein | phrog_17298 | unknown function | unknown function | -1 | 1460 | 1972 |
| YP_009191700.1 | NC_028700_p31 | hypothetical protein | phrog_121 | unknown function | unknown function | 1 | 12938 | 13441 |
| YP_009191708.1 | NC_028700_p39 | head morphogenesis protein | singleton | unknown function | unknown function | 1 | 18112 | 18630 |
| YP_009191729.1 | NC_028700_p60 | lysin | phrog_1309 | endolysin | lysis | 1 | 33491 | 34255 |
| YP_009191727.1 | NC_028700_p58 | hypothetical protein | phrog_1009 | unknown function | unknown function | 1 | 32789 | 33157 |
| YP_009191676.1 | NC_028700_p7 | hypothetical protein | phrog_4345 | unknown function | unknown function | 1 | 4030 | 4239 |
| YP_009191726.1 | NC_028700_p57 | hypothetical protein | phrog_1382 | unknown function | unknown function | 1 | 32656 | 32820 |
| YP_009191734.1 | NC_028700_p65 | exotoxin type A | phrog_1753 | enterotoxin type A / speL | moron, auxiliary metabolic gene and host takeover | -1 | 36667 | 37422 |
| YP_009191733.1 | NC_028700_p64 | hypothetical protein | phrog_5239 | unknown function | unknown function | 1 | 35886 | 36545 |
| YP_009191684.1 | NC_028700_p15 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 6511 | 7293 |
| YP_009191722.1 | NC_028700_p53 | tail protein | phrog_202 | distal tail protein Dit | tail | 1 | 25534 | 27018 |
| YP_009191690.1 | NC_028700_p21 | HTH protein | phrog_803 | host nuclease inhibitor | moron, auxiliary metabolic gene and host takeover | 1 | 9619 | 9822 |
| YP_009191725.1 | NC_028700_p56 | hypothetical protein | phrog_1060 | unknown function | unknown function | 1 | 32337 | 32684 |
| YP_009191679.1 | NC_028700_p10 | hypothetical protein | phrog_7873 | unknown function | unknown function | 1 | 4939 | 5202 |
| YP_009191705.1 | NC_028700_p36 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 15297 | 16571 |
| YP_009191698.1 | NC_028700_p29 | hypothetical protein | phrog_11337 | unknown function | unknown function | 1 | 12466 | 12651 |
| YP_009191711.1 | NC_028700_p42 | capsid protein | singleton | unknown function | unknown function | 1 | 19788 | 20201 |
| YP_009191714.1 | NC_028700_p45 | hypothetical protein | phrog_132 | head-tail adaptor | connector | 1 | 20999 | 21343 |
| YP_009191728.1 | NC_028700_p59 | holin | phrog_608 | holin | lysis | 1 | 33157 | 33489 |
| YP_009191687.1 | NC_028700_p18 | hypothetical protein | phrog_253 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 8044 | 8526 |
| YP_009191703.1 | NC_028700_p34 | hypothetical protein | phrog_36 | transcriptional regulator | transcription regulation | 1 | 13883 | 14320 |
| YP_009191675.1 | NC_028700_p6 | hypothetical protein | phrog_10731 | unknown function | unknown function | -1 | 3377 | 3976 |
| YP_009191732.1 | NC_028700_p63 | hypothetical protein | phrog_10259 | unknown function | unknown function | 1 | 35664 | 35843 |
| YP_009191721.1 | NC_028700_p52 | tail tape measure protein | phrog_3981 | tail length tape measure protein | tail | 1 | 23728 | 25533 |
| YP_009191719.1 | NC_028700_p50 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 22987 | 23304 |
| YP_009191718.1 | NC_028700_p49 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 22477 | 22974 |
| YP_009191677.1 | NC_028700_p8 | hypothetical protein | phrog_5126 | unknown function | unknown function | -1 | 4228 | 4614 |