| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028702 |
Definition |
Delftia phage IME-DE1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Piedvirus; Delftia virus IMEDE1. |
DB of origin |
REFSEQ |
Length |
38084 |
Host Name |
Delftia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
60.42 |
Number of singletons |
19 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009191795.1 | NC_028702_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15374 | 15556 |
| YP_009191830.1 | NC_028702_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36962 | 37102 |
| YP_009191818.1 | NC_028702_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28165 | 28374 |
| YP_009191793.1 | NC_028702_p10 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 13740 | 13889 |
| YP_009191812.1 | NC_028702_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24015 | 24128 |
| YP_009191822.1 | NC_028702_p39 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 31202 | 32503 |
| YP_009191811.1 | NC_028702_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23848 | 24015 |
| YP_009191809.1 | NC_028702_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22843 | 23235 |
| YP_009191794.1 | NC_028702_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15063 | 15377 |
| YP_009191796.1 | NC_028702_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15628 | 15993 |
| YP_009191823.1 | NC_028702_p40 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 32507 | 32761 |
| YP_009191792.1 | NC_028702_p9 | DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 11677 | 13431 |
| YP_009191801.1 | NC_028702_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16926 | 17372 |
| YP_009191798.1 | NC_028702_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16320 | 16514 |
| YP_009191829.1 | NC_028702_p46 | capsid and scaffold protein | phrog_267 | major head protein | head and packaging | 1 | 36002 | 36958 |
| YP_009191788.1 | NC_028702_p5 | hypothetical protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 5390 | 9262 |
| YP_009191802.1 | NC_028702_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17379 | 17768 |
| YP_009191828.1 | NC_028702_p45 | hypothetical protein | phrog_1052 | head assembly | head and packaging | 1 | 35100 | 35825 |
| YP_009191807.1 | NC_028702_p24 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 19695 | 22274 |
| YP_009191810.1 | NC_028702_p27 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 23235 | 23870 |
| YP_009191805.1 | NC_028702_p22 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 18101 | 19042 |
| YP_009191826.1 | NC_028702_p43 | collar/head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 33426 | 34490 |
| YP_009191790.1 | NC_028702_p7 | hypothetical protein | phrog_920 | holin | lysis | 1 | 11202 | 11408 |
| YP_009191800.1 | NC_028702_p17 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 16680 | 16916 |
| YP_009191819.1 | NC_028702_p36 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 28378 | 30507 |
| YP_009191797.1 | NC_028702_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 15993 | 16316 |
| YP_009191786.1 | NC_028702_p3 | hypothetical protein | phrog_805 | internal virion protein | head and packaging | 1 | 2613 | 3185 |
| YP_009191804.1 | NC_028702_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17978 | 18091 |
| YP_009191784.1 | NC_028702_p1 | tail fiber protein | phrog_457 | tail protein | tail | 1 | 40 | 2043 |
| YP_009191814.1 | NC_028702_p31 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24872 | 25342 |
| YP_009191789.1 | NC_028702_p6 | tail fiber protein | phrog_13980 | tail fiber protein | tail | 1 | 9339 | 11186 |
| YP_009191824.1 | NC_028702_p41 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 32745 | 33170 |
| YP_009191825.1 | NC_028702_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33173 | 33415 |
| YP_009191820.1 | NC_028702_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30607 | 30999 |
| YP_009191821.1 | NC_028702_p38 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 30999 | 31199 |
| YP_009191827.1 | NC_028702_p44 | collar/head-to-tail joining protein | singleton | unknown function | unknown function | 1 | 34499 | 35020 |
| YP_009191816.1 | NC_028702_p33 | hypothetical protein | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 25885 | 26412 |
| YP_009191803.1 | NC_028702_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17851 | 17997 |
| YP_009191831.1 | NC_028702_p48 | tail fiber protein | phrog_446 | tail protein | tail | 1 | 37164 | 37748 |
| YP_009191787.1 | NC_028702_p4 | hypothetical protein | phrog_1339 | internal virion protein | head and packaging | 1 | 3196 | 5376 |
| YP_009191785.1 | NC_028702_p2 | hypothetical protein | phrog_308 | internal virion protein | head and packaging | 1 | 2146 | 2628 |
| YP_009191813.1 | NC_028702_p30 | ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 24216 | 24869 |
| YP_009191808.1 | NC_028702_p25 | hypothetical protein | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 22394 | 22831 |
| YP_009191817.1 | NC_028702_p34 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 26648 | 28099 |
| YP_009191791.1 | NC_028702_p8 | hypothetical protein | phrog_1351 | terminase small subunit | head and packaging | 1 | 11401 | 11667 |
| YP_009191799.1 | NC_028702_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16556 | 16678 |
| YP_009191806.1 | NC_028702_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19039 | 19590 |
| YP_009191815.1 | NC_028702_p32 | lysin | phrog_822 | amidase | lysis | 1 | 25339 | 25800 |