Genomic map of Delftia phage IME-DE1 (NC_028702)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028702
Definition
Delftia phage IME-DE1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Piedvirus; Delftia virus IMEDE1.
DB of origin
REFSEQ
Length
38084
Host Name
Delftia
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
60.42
Number of singletons
19
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009191795.1 NC_028702_p12 hypothetical protein singleton unknown function unknown function 1 15374 15556
YP_009191830.1 NC_028702_p47 hypothetical protein singleton unknown function unknown function 1 36962 37102
YP_009191818.1 NC_028702_p35 hypothetical protein singleton unknown function unknown function 1 28165 28374
YP_009191793.1 NC_028702_p10 hypothetical protein phrog_2193 unknown function unknown function 1 13740 13889
YP_009191812.1 NC_028702_p29 hypothetical protein singleton unknown function unknown function 1 24015 24128
YP_009191822.1 NC_028702_p39 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 31202 32503
YP_009191811.1 NC_028702_p28 hypothetical protein singleton unknown function unknown function 1 23848 24015
YP_009191809.1 NC_028702_p26 hypothetical protein singleton unknown function unknown function 1 22843 23235
YP_009191794.1 NC_028702_p11 hypothetical protein singleton unknown function unknown function 1 15063 15377
YP_009191796.1 NC_028702_p13 hypothetical protein singleton unknown function unknown function 1 15628 15993
YP_009191823.1 NC_028702_p40 hypothetical protein phrog_1391 unknown function unknown function 1 32507 32761
YP_009191792.1 NC_028702_p9 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 11677 13431
YP_009191801.1 NC_028702_p18 hypothetical protein singleton unknown function unknown function 1 16926 17372
YP_009191798.1 NC_028702_p15 hypothetical protein singleton unknown function unknown function 1 16320 16514
YP_009191829.1 NC_028702_p46 capsid and scaffold protein phrog_267 major head protein head and packaging 1 36002 36958
YP_009191788.1 NC_028702_p5 hypothetical protein phrog_342 internal virion protein with endolysin domain head and packaging 1 5390 9262
YP_009191802.1 NC_028702_p19 hypothetical protein singleton unknown function unknown function 1 17379 17768
YP_009191828.1 NC_028702_p45 hypothetical protein phrog_1052 head assembly head and packaging 1 35100 35825
YP_009191807.1 NC_028702_p24 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 19695 22274
YP_009191810.1 NC_028702_p27 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 23235 23870
YP_009191805.1 NC_028702_p22 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 18101 19042
YP_009191826.1 NC_028702_p43 collar/head-to-tail joining protein phrog_449 head-tail adaptor connector 1 33426 34490
YP_009191790.1 NC_028702_p7 hypothetical protein phrog_920 holin lysis 1 11202 11408
YP_009191800.1 NC_028702_p17 hypothetical protein phrog_3199 unknown function unknown function 1 16680 16916
YP_009191819.1 NC_028702_p36 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 28378 30507
YP_009191797.1 NC_028702_p14 hypothetical protein singleton unknown function unknown function 1 15993 16316
YP_009191786.1 NC_028702_p3 hypothetical protein phrog_805 internal virion protein head and packaging 1 2613 3185
YP_009191804.1 NC_028702_p21 hypothetical protein singleton unknown function unknown function 1 17978 18091
YP_009191784.1 NC_028702_p1 tail fiber protein phrog_457 tail protein tail 1 40 2043
YP_009191814.1 NC_028702_p31 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 24872 25342
YP_009191789.1 NC_028702_p6 tail fiber protein phrog_13980 tail fiber protein tail 1 9339 11186
YP_009191824.1 NC_028702_p41 hypothetical protein phrog_3986 unknown function unknown function 1 32745 33170
YP_009191825.1 NC_028702_p42 hypothetical protein singleton unknown function unknown function 1 33173 33415
YP_009191820.1 NC_028702_p37 hypothetical protein singleton unknown function unknown function 1 30607 30999
YP_009191821.1 NC_028702_p38 hypothetical protein phrog_1334 unknown function unknown function 1 30999 31199
YP_009191827.1 NC_028702_p44 collar/head-to-tail joining protein singleton unknown function unknown function 1 34499 35020
YP_009191816.1 NC_028702_p33 hypothetical protein phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 25885 26412
YP_009191803.1 NC_028702_p20 hypothetical protein singleton unknown function unknown function 1 17851 17997
YP_009191831.1 NC_028702_p48 tail fiber protein phrog_446 tail protein tail 1 37164 37748
YP_009191787.1 NC_028702_p4 hypothetical protein phrog_1339 internal virion protein head and packaging 1 3196 5376
YP_009191785.1 NC_028702_p2 hypothetical protein phrog_308 internal virion protein head and packaging 1 2146 2628
YP_009191813.1 NC_028702_p30 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 24216 24869
YP_009191808.1 NC_028702_p25 hypothetical protein phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 22394 22831
YP_009191817.1 NC_028702_p34 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 26648 28099
YP_009191791.1 NC_028702_p8 hypothetical protein phrog_1351 terminase small subunit head and packaging 1 11401 11667
YP_009191799.1 NC_028702_p16 hypothetical protein singleton unknown function unknown function 1 16556 16678
YP_009191806.1 NC_028702_p23 hypothetical protein singleton unknown function unknown function 1 19039 19590
YP_009191815.1 NC_028702_p32 lysin phrog_822 amidase lysis 1 25339 25800