Genomic map of Mycobacterium phage LadyBird (NC_028744)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028744
Definition
Mycobacterium phage LadyBird, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
53141
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
63.45
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009193673.1 NC_028744_p45 hypothetical protein phrog_896 unknown function unknown function -1 29698 29919
YP_009193645.1 NC_028744_p17 head-to-tail connector protein phrog_137 head-tail adaptor Ad1 connector 1 13341 13718
YP_009193687.1 NC_028744_p59 hypothetical protein phrog_2436 unknown function unknown function -1 37730 37882
YP_009193634.1 NC_028744_p6 minor tail protein phrog_1260 minor tail protein tail 1 3356 4330
YP_009193667.1 NC_028744_p39 hypothetical protein phrog_542 unknown function unknown function -1 28134 28319
YP_009193629.1 NC_028744_p1 hypothetical protein phrog_940 nuclease DNA, RNA and nucleotide metabolism 1 570 1331
YP_009193714.1 NC_028744_p86 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47796 48119
YP_009193639.1 NC_028744_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 7410 9197
YP_009193640.1 NC_028744_p12 portal protein phrog_104 portal protein head and packaging 1 9194 10654
YP_009193715.1 NC_028744_p87 hypothetical protein phrog_421 unknown function unknown function -1 48116 48874
YP_009193653.1 NC_028744_p25 tape measure protein phrog_305 tail length tape measure protein tail 1 16593 19130
YP_009193685.1 NC_028744_p57 hypothetical protein phrog_499 unknown function unknown function -1 36793 36975
YP_009193719.1 NC_028744_p91 hypothetical protein phrog_586 unknown function unknown function -1 49766 50113
YP_009193635.1 NC_028744_p7 hypothetical protein phrog_1087 unknown function unknown function 1 4523 4681
YP_009193650.1 NC_028744_p22 major tail protein phrog_117 major tail protein tail 1 15069 15665
YP_009193641.1 NC_028744_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10684 11535
YP_009193647.1 NC_028744_p19 head-to-tail connector protein phrog_320 head closure Hc1 connector 1 13906 14274
YP_009193692.1 NC_028744_p64 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39660 40052
YP_009193696.1 NC_028744_p68 esterase phrog_789 esterase/lipase other -1 40839 41675
YP_009193693.1 NC_028744_p65 hypothetical protein phrog_1370 unknown function unknown function -1 40121 40255
YP_009193718.1 NC_028744_p90 hypothetical protein phrog_2355 unknown function unknown function -1 49377 49745
YP_009193689.1 NC_028744_p61 hypothetical protein phrog_1167 phosphofructokinase other -1 38653 39099
YP_009193721.1 NC_028744_p93 hypothetical protein phrog_1946 unknown function unknown function -1 50274 50501
YP_009193669.1 NC_028744_p41 hypothetical protein phrog_383 unknown function unknown function -1 28548 28922
YP_009193663.1 NC_028744_p35 ParB dsDNA partitioning protein phrog_2639 Arc-like repressor transcription regulation 1 27097 27375
YP_009193700.1 NC_028744_p72 hypothetical protein phrog_12205 unknown function unknown function -1 43298 43426
YP_009193697.1 NC_028744_p69 hypothetical protein phrog_397 unknown function unknown function -1 41776 42006
YP_009193698.1 NC_028744_p70 helix-turn-helix DNA binding domain protein phrog_9069 unknown function unknown function -1 42154 42453
YP_009193684.1 NC_028744_p56 hypothetical protein phrog_2046 unknown function unknown function -1 36593 36796
YP_009193682.1 NC_028744_p54 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 34000 34524
YP_009193678.1 NC_028744_p50 helix-turn-helix DNA binding domain protein phrog_517 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 32324 32746
YP_009193675.1 NC_028744_p47 hypothetical protein phrog_4326 unknown function unknown function -1 31745 31939
YP_009193651.1 NC_028744_p23 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15774 16603
YP_009193633.1 NC_028744_p5 hypothetical protein phrog_226 minor tail protein tail 1 2799 3269
YP_009193658.1 NC_028744_p30 minor tail protein phrog_737 minor tail protein tail 1 22727 25135
YP_009193656.1 NC_028744_p28 minor tail protein phrog_352 minor tail protein tail 1 21960 22406
YP_009193713.1 NC_028744_p85 hypothetical protein phrog_1477 unknown function unknown function -1 47674 47796
YP_009193648.1 NC_028744_p20 head-to-tail connector protein phrog_321 tail completion or Neck1 protein connector 1 14274 14609
YP_009193707.1 NC_028744_p79 hypothetical protein phrog_1173 unknown function unknown function -1 46318 46485
YP_009193712.1 NC_028744_p84 hypothetical protein phrog_3351 unknown function unknown function -1 47451 47663
YP_009193631.1 NC_028744_p3 hypothetical protein phrog_4491 unknown function unknown function 1 2161 2466
YP_009193723.1 NC_028744_p95 hypothetical protein phrog_1392 unknown function unknown function -1 50758 51468
YP_009193632.1 NC_028744_p4 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2463 2759
YP_009193636.1 NC_028744_p8 lysin A phrog_317 endolysin lysis 1 4681 5976
YP_009193709.1 NC_028744_p81 hypothetical protein phrog_8490 unknown function unknown function -1 46767 46907
YP_009193652.1 NC_028744_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15774 16181
YP_009193642.1 NC_028744_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 11551 12099
YP_009193705.1 NC_028744_p77 hypothetical protein phrog_1562 unknown function unknown function -1 45021 45434
YP_009193657.1 NC_028744_p29 minor tail protein phrog_404 minor tail protein tail 1 22403 22726
YP_009193672.1 NC_028744_p44 hypothetical protein phrog_3283 unknown function unknown function -1 29468 29701
YP_009193637.1 NC_028744_p9 holin phrog_526 holin lysis 1 5973 6413
YP_009193716.1 NC_028744_p88 hypothetical protein phrog_855 unknown function unknown function -1 48874 49008
YP_009193683.1 NC_028744_p55 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 34536 36593
YP_009193661.1 NC_028744_p33 hypothetical protein singleton unknown function unknown function 1 25923 26153
YP_009193655.1 NC_028744_p27 minor tail protein phrog_110 minor tail protein tail 1 20171 21943
YP_009193654.1 NC_028744_p26 minor tail protein phrog_106 minor tail protein tail 1 19164 20174
YP_009193630.1 NC_028744_p2 hypothetical protein phrog_3895 ADP-ribosyltransferase exoenzyme toxin moron, auxiliary metabolic gene and host takeover 1 1574 2164
YP_009193720.1 NC_028744_p92 hypothetical protein phrog_519 unknown function unknown function -1 50110 50277
YP_009193702.1 NC_028744_p74 hypothetical protein phrog_666 unknown function unknown function -1 43691 43885
YP_009193710.1 NC_028744_p82 hypothetical protein phrog_1178 unknown function unknown function -1 46904 47185
YP_009193695.1 NC_028744_p67 hypothetical protein phrog_2187 unknown function unknown function -1 40720 40839
YP_009193681.1 NC_028744_p53 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 33195 33923
YP_009193690.1 NC_028744_p62 hypothetical protein phrog_2264 unknown function unknown function -1 39096 39200
YP_009193660.1 NC_028744_p32 hypothetical protein phrog_4480 unknown function unknown function 1 25560 25874
YP_009193680.1 NC_028744_p52 hypothetical protein phrog_1454 unknown function unknown function -1 32945 33193
YP_009193722.1 NC_028744_p94 hypothetical protein phrog_6255 unknown function unknown function -1 50501 50749
YP_009193724.1 NC_028744_p96 hypothetical protein phrog_1676 unknown function unknown function -1 51600 51890
YP_009193649.1 NC_028744_p21 head-to-tail connector protein phrog_123 tail terminator connector 1 14619 15050
YP_009193694.1 NC_028744_p66 endonuclease VII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40281 40754
YP_009193665.1 NC_028744_p37 hypothetical protein phrog_6992 unknown function unknown function -1 27740 27910
YP_009193670.1 NC_028744_p42 hypothetical protein phrog_2099 unknown function unknown function -1 28915 29187
YP_009193711.1 NC_028744_p83 hypothetical protein phrog_1875 unknown function unknown function -1 47182 47454
YP_009193706.1 NC_028744_p78 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 45491 46012
YP_009193671.1 NC_028744_p43 hypothetical protein phrog_3771 unknown function unknown function -1 29184 29444
YP_009193666.1 NC_028744_p38 hypothetical protein phrog_13926 unknown function unknown function -1 27907 28125
YP_009193662.1 NC_028744_p34 ParA dsDNA partitioning protein phrog_164 ParA-like partition protein DNA, RNA and nucleotide metabolism 1 26523 27110
YP_009193674.1 NC_028744_p46 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 29950 31737
YP_009193686.1 NC_028744_p58 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36972 37733
YP_009193699.1 NC_028744_p71 dsDNA helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 42481 43287
YP_009193664.1 NC_028744_p36 hypothetical protein phrog_2697 unknown function unknown function 1 27424 27630
YP_009193691.1 NC_028744_p63 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39200 39739
YP_009193701.1 NC_028744_p73 hypothetical protein phrog_520 unknown function unknown function -1 43423 43662
YP_009193676.1 NC_028744_p48 hypothetical protein phrog_3812 unknown function unknown function -1 31936 32124
YP_009193708.1 NC_028744_p80 hypothetical protein phrog_4294 unknown function unknown function -1 46604 46765
YP_009193668.1 NC_028744_p40 hypothetical protein phrog_980 unknown function unknown function -1 28316 28555
YP_009193643.1 NC_028744_p15 major capsid protein phrog_10 major head protein head and packaging 1 12129 13085
YP_009193717.1 NC_028744_p89 hypothetical protein phrog_3718 unknown function unknown function -1 49019 49324
YP_009193688.1 NC_028744_p60 phosphoesterase phrog_221 metallo-phosphoesterase other -1 37886 38656
YP_009193704.1 NC_028744_p76 exonuclease phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 44128 45024
YP_009193659.1 NC_028744_p31 DNA bridging protein phrog_1223 nucloid associated Lsr2-like DNA, RNA and nucleotide metabolism 1 25226 25567
YP_009193677.1 NC_028744_p49 hypothetical protein phrog_11816 unknown function unknown function -1 32124 32324
YP_009193679.1 NC_028744_p51 hypothetical protein phrog_690 unknown function unknown function -1 32743 32952
YP_009193646.1 NC_028744_p18 head-to-tail connector protein phrog_830 head-tail connector protein connector 1 13715 13909
YP_009193703.1 NC_028744_p75 hypothetical protein phrog_642 unknown function unknown function -1 43882 44079
YP_009193644.1 NC_028744_p16 head-to-tail connector protein phrog_748 head-tail connector protein connector 1 13155 13337
YP_009193638.1 NC_028744_p10 lysin B phrog_102 endolysin lysis 1 6410 7387