| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028744 |
Definition |
Mycobacterium phage LadyBird, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
53141 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
63.45 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009193673.1 | NC_028744_p45 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29698 | 29919 |
| YP_009193645.1 | NC_028744_p17 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13341 | 13718 |
| YP_009193687.1 | NC_028744_p59 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37730 | 37882 |
| YP_009193634.1 | NC_028744_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3356 | 4330 |
| YP_009193667.1 | NC_028744_p39 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 28134 | 28319 |
| YP_009193629.1 | NC_028744_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 570 | 1331 |
| YP_009193714.1 | NC_028744_p86 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47796 | 48119 |
| YP_009193639.1 | NC_028744_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 7410 | 9197 |
| YP_009193640.1 | NC_028744_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9194 | 10654 |
| YP_009193715.1 | NC_028744_p87 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 48116 | 48874 |
| YP_009193653.1 | NC_028744_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 16593 | 19130 |
| YP_009193685.1 | NC_028744_p57 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36793 | 36975 |
| YP_009193719.1 | NC_028744_p91 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 49766 | 50113 |
| YP_009193635.1 | NC_028744_p7 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 4523 | 4681 |
| YP_009193650.1 | NC_028744_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15069 | 15665 |
| YP_009193641.1 | NC_028744_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10684 | 11535 |
| YP_009193647.1 | NC_028744_p19 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 13906 | 14274 |
| YP_009193692.1 | NC_028744_p64 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39660 | 40052 |
| YP_009193696.1 | NC_028744_p68 | esterase | phrog_789 | esterase/lipase | other | -1 | 40839 | 41675 |
| YP_009193693.1 | NC_028744_p65 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 40121 | 40255 |
| YP_009193718.1 | NC_028744_p90 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 49377 | 49745 |
| YP_009193689.1 | NC_028744_p61 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38653 | 39099 |
| YP_009193721.1 | NC_028744_p93 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 50274 | 50501 |
| YP_009193669.1 | NC_028744_p41 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28548 | 28922 |
| YP_009193663.1 | NC_028744_p35 | ParB dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 27097 | 27375 |
| YP_009193700.1 | NC_028744_p72 | hypothetical protein | phrog_12205 | unknown function | unknown function | -1 | 43298 | 43426 |
| YP_009193697.1 | NC_028744_p69 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 41776 | 42006 |
| YP_009193698.1 | NC_028744_p70 | helix-turn-helix DNA binding domain protein | phrog_9069 | unknown function | unknown function | -1 | 42154 | 42453 |
| YP_009193684.1 | NC_028744_p56 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36593 | 36796 |
| YP_009193682.1 | NC_028744_p54 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34000 | 34524 |
| YP_009193678.1 | NC_028744_p50 | helix-turn-helix DNA binding domain protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32324 | 32746 |
| YP_009193675.1 | NC_028744_p47 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 31745 | 31939 |
| YP_009193651.1 | NC_028744_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15774 | 16603 |
| YP_009193633.1 | NC_028744_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2799 | 3269 |
| YP_009193658.1 | NC_028744_p30 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 22727 | 25135 |
| YP_009193656.1 | NC_028744_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 21960 | 22406 |
| YP_009193713.1 | NC_028744_p85 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 47674 | 47796 |
| YP_009193648.1 | NC_028744_p20 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14274 | 14609 |
| YP_009193707.1 | NC_028744_p79 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 46318 | 46485 |
| YP_009193712.1 | NC_028744_p84 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 47451 | 47663 |
| YP_009193631.1 | NC_028744_p3 | hypothetical protein | phrog_4491 | unknown function | unknown function | 1 | 2161 | 2466 |
| YP_009193723.1 | NC_028744_p95 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50758 | 51468 |
| YP_009193632.1 | NC_028744_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2463 | 2759 |
| YP_009193636.1 | NC_028744_p8 | lysin A | phrog_317 | endolysin | lysis | 1 | 4681 | 5976 |
| YP_009193709.1 | NC_028744_p81 | hypothetical protein | phrog_8490 | unknown function | unknown function | -1 | 46767 | 46907 |
| YP_009193652.1 | NC_028744_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15774 | 16181 |
| YP_009193642.1 | NC_028744_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11551 | 12099 |
| YP_009193705.1 | NC_028744_p77 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 45021 | 45434 |
| YP_009193657.1 | NC_028744_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 22403 | 22726 |
| YP_009193672.1 | NC_028744_p44 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29468 | 29701 |
| YP_009193637.1 | NC_028744_p9 | holin | phrog_526 | holin | lysis | 1 | 5973 | 6413 |
| YP_009193716.1 | NC_028744_p88 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48874 | 49008 |
| YP_009193683.1 | NC_028744_p55 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34536 | 36593 |
| YP_009193661.1 | NC_028744_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 25923 | 26153 |
| YP_009193655.1 | NC_028744_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20171 | 21943 |
| YP_009193654.1 | NC_028744_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19164 | 20174 |
| YP_009193630.1 | NC_028744_p2 | hypothetical protein | phrog_3895 | ADP-ribosyltransferase exoenzyme toxin | moron, auxiliary metabolic gene and host takeover | 1 | 1574 | 2164 |
| YP_009193720.1 | NC_028744_p92 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 50110 | 50277 |
| YP_009193702.1 | NC_028744_p74 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43691 | 43885 |
| YP_009193710.1 | NC_028744_p82 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46904 | 47185 |
| YP_009193695.1 | NC_028744_p67 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 40720 | 40839 |
| YP_009193681.1 | NC_028744_p53 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 33195 | 33923 |
| YP_009193690.1 | NC_028744_p62 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 39096 | 39200 |
| YP_009193660.1 | NC_028744_p32 | hypothetical protein | phrog_4480 | unknown function | unknown function | 1 | 25560 | 25874 |
| YP_009193680.1 | NC_028744_p52 | hypothetical protein | phrog_1454 | unknown function | unknown function | -1 | 32945 | 33193 |
| YP_009193722.1 | NC_028744_p94 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 50501 | 50749 |
| YP_009193724.1 | NC_028744_p96 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51600 | 51890 |
| YP_009193649.1 | NC_028744_p21 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 14619 | 15050 |
| YP_009193694.1 | NC_028744_p66 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40281 | 40754 |
| YP_009193665.1 | NC_028744_p37 | hypothetical protein | phrog_6992 | unknown function | unknown function | -1 | 27740 | 27910 |
| YP_009193670.1 | NC_028744_p42 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28915 | 29187 |
| YP_009193711.1 | NC_028744_p83 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 47182 | 47454 |
| YP_009193706.1 | NC_028744_p78 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45491 | 46012 |
| YP_009193671.1 | NC_028744_p43 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 29184 | 29444 |
| YP_009193666.1 | NC_028744_p38 | hypothetical protein | phrog_13926 | unknown function | unknown function | -1 | 27907 | 28125 |
| YP_009193662.1 | NC_028744_p34 | ParA dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26523 | 27110 |
| YP_009193674.1 | NC_028744_p46 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29950 | 31737 |
| YP_009193686.1 | NC_028744_p58 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36972 | 37733 |
| YP_009193699.1 | NC_028744_p71 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 42481 | 43287 |
| YP_009193664.1 | NC_028744_p36 | hypothetical protein | phrog_2697 | unknown function | unknown function | 1 | 27424 | 27630 |
| YP_009193691.1 | NC_028744_p63 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39200 | 39739 |
| YP_009193701.1 | NC_028744_p73 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43423 | 43662 |
| YP_009193676.1 | NC_028744_p48 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 31936 | 32124 |
| YP_009193708.1 | NC_028744_p80 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 46604 | 46765 |
| YP_009193668.1 | NC_028744_p40 | hypothetical protein | phrog_980 | unknown function | unknown function | -1 | 28316 | 28555 |
| YP_009193643.1 | NC_028744_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12129 | 13085 |
| YP_009193717.1 | NC_028744_p89 | hypothetical protein | phrog_3718 | unknown function | unknown function | -1 | 49019 | 49324 |
| YP_009193688.1 | NC_028744_p60 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37886 | 38656 |
| YP_009193704.1 | NC_028744_p76 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44128 | 45024 |
| YP_009193659.1 | NC_028744_p31 | DNA bridging protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | 1 | 25226 | 25567 |
| YP_009193677.1 | NC_028744_p49 | hypothetical protein | phrog_11816 | unknown function | unknown function | -1 | 32124 | 32324 |
| YP_009193679.1 | NC_028744_p51 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32743 | 32952 |
| YP_009193646.1 | NC_028744_p18 | head-to-tail connector protein | phrog_830 | head-tail connector protein | connector | 1 | 13715 | 13909 |
| YP_009193703.1 | NC_028744_p75 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43882 | 44079 |
| YP_009193644.1 | NC_028744_p16 | head-to-tail connector protein | phrog_748 | head-tail connector protein | connector | 1 | 13155 | 13337 |
| YP_009193638.1 | NC_028744_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6410 | 7387 |