| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028746 |
Definition |
Paenibacillus phage Harrison, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Harrisonvirus. |
DB of origin |
REFSEQ |
Length |
44249 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
84 |
%GC |
40.15 |
Number of singletons |
22 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009193877.1 | NC_028746_p64 | hypothetical protein | phrog_7370 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36659 | 36991 |
| YP_009193825.1 | NC_028746_p12 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 7289 | 7660 |
| YP_009193883.1 | NC_028746_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39336 | 39512 |
| YP_009193875.1 | NC_028746_p62 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35860 | 36264 |
| YP_009193814.1 | NC_028746_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| YP_009193836.1 | NC_028746_p23 | transposase | phrog_1299 | holin | lysis | 1 | 16353 | 16607 |
| YP_009193840.1 | NC_028746_p27 | hypothetical protein | phrog_35861 | unknown function | unknown function | 1 | 18119 | 18562 |
| YP_009193844.1 | NC_028746_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22380 | 22607 |
| YP_009193849.1 | NC_028746_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23987 | 24145 |
| YP_009193873.1 | NC_028746_p60 | hypothetical protein | phrog_2205 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 34681 | 35229 |
| YP_009193887.1 | NC_028746_p74 | hypothetical protein | phrog_26793 | unknown function | unknown function | 1 | 40907 | 41140 |
| YP_009193859.1 | NC_028746_p46 | helix-turn-helix domain XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 29880 | 30101 |
| YP_009193829.1 | NC_028746_p16 | endopeptidase tail protein | phrog_538 | minor tail protein | tail | 1 | 12468 | 13586 |
| YP_009193879.1 | NC_028746_p66 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 37986 | 38639 |
| YP_009193874.1 | NC_028746_p61 | single stranded DNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 35232 | 35870 |
| YP_009193897.1 | NC_028746_p84 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43820 | 44161 |
| YP_009193831.1 | NC_028746_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 14675 | 15016 |
| YP_009193872.1 | NC_028746_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34421 | 34684 |
| YP_009193870.1 | NC_028746_p57 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33853 | 34203 |
| YP_009193838.1 | NC_028746_p25 | ABC transporter-like protein | phrog_37984 | unknown function | unknown function | 1 | 16794 | 17762 |
| YP_009193830.1 | NC_028746_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 13583 | 14665 |
| YP_009193878.1 | NC_028746_p65 | primosome | phrog_9474 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 37040 | 37927 |
| YP_009193843.1 | NC_028746_p30 | toxin | phrog_37443 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 19417 | 22344 |
| YP_009193884.1 | NC_028746_p71 | hypothetical protein | phrog_10273 | unknown function | unknown function | 1 | 39525 | 39890 |
| YP_009193816.1 | NC_028746_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2066 | 3319 |
| YP_009193866.1 | NC_028746_p53 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 31696 | 32448 |
| YP_009193890.1 | NC_028746_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41524 | 41619 |
| YP_009193896.1 | NC_028746_p83 | transglycosylase | phrog_1315 | unknown function | unknown function | 1 | 43519 | 43833 |
| YP_009193820.1 | NC_028746_p7 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5290 | 5553 |
| YP_009193882.1 | NC_028746_p69 | endodeoxyribonuclease RusA | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 38969 | 39343 |
| YP_009193834.1 | NC_028746_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_3088 | amidase | lysis | 1 | 15391 | 16068 |
| YP_009193828.1 | NC_028746_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 11599 | 12465 |
| YP_009193857.1 | NC_028746_p44 | serine recombinase | phrog_95 | integrase | integration and excision | -1 | 27358 | 29445 |
| YP_009193891.1 | NC_028746_p78 | ArpU family transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 41641 | 42084 |
| YP_009193818.1 | NC_028746_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5164 |
| YP_009193817.1 | NC_028746_p4 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 3303 | 4025 |
| YP_009193822.1 | NC_028746_p9 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5867 | 6259 |
| YP_009193885.1 | NC_028746_p72 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 39907 | 40689 |
| YP_009193819.1 | NC_028746_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5142 | 5297 |
| YP_009193842.1 | NC_028746_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18776 | 18871 |
| YP_009193862.1 | NC_028746_p49 | hypothetical protein | phrog_22780 | unknown function | unknown function | 1 | 30720 | 30923 |
| YP_009193851.1 | NC_028746_p38 | hypothetical protein | phrog_15604 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 25131 | 25799 |
| YP_009193852.1 | NC_028746_p39 | accessory gene regulator B | phrog_10353 | unknown function | unknown function | 1 | 25792 | 26307 |
| YP_009193846.1 | NC_028746_p33 | hypothetical protein | phrog_24691 | unknown function | unknown function | -1 | 23005 | 23190 |
| YP_009193868.1 | NC_028746_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33013 | 33270 |
| YP_009193835.1 | NC_028746_p22 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 16065 | 16340 |
| YP_009193894.1 | NC_028746_p81 | toxin HicA | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 43136 | 43339 |
| YP_009193863.1 | NC_028746_p50 | hypothetical protein | phrog_13601 | unknown function | unknown function | 1 | 30930 | 31307 |
| YP_009193853.1 | NC_028746_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26304 | 26432 |
| YP_009193881.1 | NC_028746_p68 | hypothetical protein | phrog_3356 | transposase | integration and excision | 1 | 38758 | 38976 |
| YP_009193826.1 | NC_028746_p13 | hypothetical protein | phrog_22986 | unknown function | unknown function | 1 | 7771 | 7875 |
| YP_009193827.1 | NC_028746_p14 | tail tape-measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 7894 | 11598 |
| YP_009193865.1 | NC_028746_p52 | hypothetical protein | phrog_13275 | unknown function | unknown function | 1 | 31518 | 31691 |
| YP_009193833.1 | NC_028746_p20 | bacteriocin biosynthesis protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 15155 | 15394 |
| YP_009193869.1 | NC_028746_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33260 | 33772 |
| YP_009193841.1 | NC_028746_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 18620 | 18730 |
| YP_009193893.1 | NC_028746_p80 | antitoxin HicB | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 42689 | 43105 |
| YP_009193821.1 | NC_028746_p8 | head-tail adaptor protein | phrog_25 | head closure Hc1 | connector | 1 | 5550 | 5870 |
| YP_009193861.1 | NC_028746_p48 | hypothetical protein | phrog_13817 | unknown function | unknown function | 1 | 30430 | 30699 |
| YP_009193867.1 | NC_028746_p54 | hypothetical protein | phrog_14421 | unknown function | unknown function | 1 | 32445 | 33020 |
| YP_009193845.1 | NC_028746_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22656 | 22919 |
| YP_009193856.1 | NC_028746_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27082 | 27318 |
| YP_009193876.1 | NC_028746_p63 | hypothetical protein | phrog_15234 | unknown function | unknown function | 1 | 36273 | 36662 |
| YP_009193886.1 | NC_028746_p73 | hypothetical protein | phrog_7018 | unknown function | unknown function | 1 | 40673 | 40855 |
| YP_009193823.1 | NC_028746_p10 | prohead protease | phrog_78 | tail terminator | connector | 1 | 6256 | 6585 |
| YP_009193855.1 | NC_028746_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 26973 | 27080 |
| YP_009193847.1 | NC_028746_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23232 | 23324 |
| YP_009193839.1 | NC_028746_p26 | hypothetical protein | phrog_33512 | unknown function | unknown function | 1 | 17782 | 18135 |
| YP_009193892.1 | NC_028746_p79 | cytoplasmic protein | phrog_8256 | unknown function | unknown function | 1 | 42290 | 42634 |
| YP_009193864.1 | NC_028746_p51 | hypothetical protein | phrog_10535 | unknown function | unknown function | 1 | 31304 | 31534 |
| YP_009193850.1 | NC_028746_p37 | telomeric repeat-binding factor 2 | phrog_806 | unknown function | unknown function | -1 | 24356 | 24907 |
| YP_009193848.1 | NC_028746_p35 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 23428 | 23886 |
| YP_009193888.1 | NC_028746_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41133 | 41378 |
| YP_009193815.1 | NC_028746_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| YP_009193858.1 | NC_028746_p45 | helix-turn-helix domain XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 29447 | 29785 |
| YP_009193860.1 | NC_028746_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30218 | 30415 |
| YP_009193880.1 | NC_028746_p67 | hypothetical protein | singleton | unknown function | unknown function | 1 | 38641 | 38751 |
| YP_009193895.1 | NC_028746_p82 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43340 | 43498 |
| YP_009193837.1 | NC_028746_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16645 | 16794 |
| YP_009193824.1 | NC_028746_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 6621 | 7217 |
| YP_009193889.1 | NC_028746_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 41375 | 41518 |
| YP_009193854.1 | NC_028746_p41 | dipeptidyl aminopeptidase/acylaminoacyl-peptidase | phrog_15081 | peptidase | other | 1 | 26439 | 26795 |
| YP_009193871.1 | NC_028746_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 34181 | 34321 |
| YP_009193832.1 | NC_028746_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 15013 | 15174 |