Genomic map of Mycobacterium phage Quico (NC_028751)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028751
Definition
Mycobacterium phage Quico, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
58671
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
112
%GC
61.68
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009194612.1 NC_028751_p88 hypothetical protein phrog_5892 unknown function unknown function 1 50679 50837
YP_009194558.1 NC_028751_p34 hypothetical protein phrog_404 minor tail protein tail 1 28573 28947
YP_009194618.1 NC_028751_p94 hypothetical protein phrog_6540 unknown function unknown function 1 52005 52301
YP_009194540.1 NC_028751_p16 minor tail protein phrog_106 minor tail protein tail 1 12846 14555
YP_009194580.1 NC_028751_p56 hypothetical protein phrog_18246 unknown function unknown function 1 36774 37289
YP_009194602.1 NC_028751_p78 DNA binding domain phrog_6506 Arc-like repressor transcription regulation -1 46525 46686
YP_009194615.1 NC_028751_p91 hypothetical protein phrog_647 unknown function unknown function 1 51411 51695
YP_009194563.1 NC_028751_p39 hypothetical protein phrog_26953 unknown function unknown function -1 30654 30770
YP_009194551.1 NC_028751_p27 hypothetical protein phrog_411 unknown function unknown function 1 25263 25547
YP_009194585.1 NC_028751_p61 hypothetical protein phrog_1816 unknown function unknown function 1 39522 39710
YP_009194620.1 NC_028751_p96 hypothetical protein phrog_1545 unknown function unknown function 1 52459 52614
YP_009194568.1 NC_028751_p44 hypothetical protein phrog_12593 unknown function unknown function -1 31548 31718
YP_009194526.1 NC_028751_p2 hypothetical protein phrog_4479 terminase small subunit head and packaging 1 446 700
YP_009194610.1 NC_028751_p86 hypothetical protein phrog_2730 unknown function unknown function 1 50288 50491
YP_009194577.1 NC_028751_p53 hypothetical protein singleton unknown function unknown function -1 35456 35596
YP_009194546.1 NC_028751_p22 hypothetical protein phrog_240 head protein head and packaging 1 22821 23162
YP_009194534.1 NC_028751_p10 hypothetical protein phrog_1929 head-tail connector protein connector 1 6627 6953
YP_009194584.1 NC_028751_p60 hypothetical protein phrog_2021 unknown function unknown function 1 39037 39525
YP_009194630.1 NC_028751_p106 hypothetical protein phrog_3813 unknown function unknown function 1 55225 55482
YP_009194622.1 NC_028751_p98 hypothetical protein phrog_2278 unknown function unknown function 1 52837 53127
YP_009194554.1 NC_028751_p30 hypothetical protein phrog_747 unknown function unknown function 1 25905 26138
YP_009194603.1 NC_028751_p79 hypothetical protein phrog_8485 unknown function unknown function -1 46679 47056
YP_009194590.1 NC_028751_p66 WhiB phrog_1333 unknown function unknown function 1 41315 41722
YP_009194607.1 NC_028751_p83 hypothetical protein phrog_2451 unknown function unknown function 1 49042 49176
YP_009194625.1 NC_028751_p101 hypothetical protein phrog_2247 unknown function unknown function 1 53678 53929
YP_009194528.1 NC_028751_p4 portal protein phrog_104 portal protein head and packaging 1 2197 3618
YP_009194605.1 NC_028751_p81 hypothetical protein phrog_2001 unknown function unknown function 1 47428 47550
YP_009194597.1 NC_028751_p73 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43794 44156
YP_009194557.1 NC_028751_p33 holin phrog_443 holin lysis 1 28343 28576
YP_009194616.1 NC_028751_p92 hypothetical protein phrog_4152 unknown function unknown function 1 51692 51820
YP_009194532.1 NC_028751_p8 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 5923 6294
YP_009194565.1 NC_028751_p41 hypothetical protein phrog_10332 unknown function unknown function -1 31007 31201
YP_009194623.1 NC_028751_p99 hypothetical protein phrog_10901 unknown function unknown function 1 53167 53400
YP_009194533.1 NC_028751_p9 hypothetical protein phrog_763 head-tail adaptor connector 1 6291 6620
YP_009194611.1 NC_028751_p87 hypothetical protein phrog_1943 unknown function unknown function 1 50488 50682
YP_009194539.1 NC_028751_p15 tapemeasure phrog_1942 tail length tape measure protein tail 1 9357 12845
YP_009194593.1 NC_028751_p69 hypothetical protein phrog_2078 unknown function unknown function 1 42581 42736
YP_009194604.1 NC_028751_p80 hypothetical protein phrog_8611 unknown function unknown function -1 47063 47380
YP_009194626.1 NC_028751_p102 hypothetical protein phrog_1467 unknown function unknown function 1 53926 54570
YP_009194614.1 NC_028751_p90 hypothetical protein phrog_7842 unknown function unknown function 1 51241 51414
YP_009194582.1 NC_028751_p58 hypothetical protein phrog_15946 unknown function unknown function 1 38300 38755
YP_009194549.1 NC_028751_p25 hypothetical protein phrog_754 minor tail protein tail 1 24087 24911
YP_009194564.1 NC_028751_p40 hypothetical protein phrog_7977 unknown function unknown function -1 30760 31014
YP_009194600.1 NC_028751_p76 hypothetical protein phrog_3821 unknown function unknown function 1 44464 44814
YP_009194619.1 NC_028751_p95 hypothetical protein phrog_1091 unknown function unknown function 1 52283 52477
YP_009194629.1 NC_028751_p105 hypothetical protein phrog_1694 unknown function unknown function 1 55073 55228
YP_009194529.1 NC_028751_p5 head maturation protease phrog_193 head maturation protease head and packaging 1 3602 4327
YP_009194606.1 NC_028751_p82 DNA methylase phrog_67 DNA methyltransferase other 1 47597 49045
YP_009194536.1 NC_028751_p12 hypothetical protein phrog_476 major tail protein tail 1 7458 8267
YP_009194609.1 NC_028751_p85 hypothetical protein phrog_2080 unknown function unknown function 1 50028 50291
YP_009194544.1 NC_028751_p20 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 19761 21647
YP_009194576.1 NC_028751_p52 immunity repressor phrog_3949 transcriptional repressor transcription regulation -1 34923 35423
YP_009194635.1 NC_028751_p111 hypothetical protein phrog_1693 unknown function unknown function 1 57777 57971
YP_009194591.1 NC_028751_p67 hypothetical protein phrog_2096 unknown function unknown function 1 41719 42219
YP_009194633.1 NC_028751_p109 hypothetical protein phrog_2057 unknown function unknown function 1 56144 56305
YP_009194621.1 NC_028751_p97 hypothetical protein phrog_5186 unknown function unknown function 1 52611 52784
YP_009194574.1 NC_028751_p50 integrase phrog_1 integrase integration and excision 1 32828 34129
YP_009194571.1 NC_028751_p47 hypothetical protein phrog_5254 unknown function unknown function -1 32017 32268
YP_009194599.1 NC_028751_p75 hypothetical protein phrog_1311 unknown function unknown function 1 44316 44471
YP_009194548.1 NC_028751_p24 hypothetical protein phrog_2012 minor tail protein tail 1 23452 24090
YP_009194556.1 NC_028751_p32 lysin B phrog_102 endolysin lysis 1 27328 28329
YP_009194531.1 NC_028751_p7 capsid protein phrog_10 major head protein head and packaging 1 5002 5910
YP_009194561.1 NC_028751_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30028 30318
YP_009194530.1 NC_028751_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4403 4939
YP_009194578.1 NC_028751_p54 HTH DNA-binding domain protein phrog_6267 transcriptional repressor transcription regulation 1 35617 35910
YP_009194581.1 NC_028751_p57 hypothetical protein phrog_4652 unknown function unknown function 1 37686 38285
YP_009194595.1 NC_028751_p71 hypothetical protein phrog_2632 unknown function unknown function 1 42960 43205
YP_009194613.1 NC_028751_p89 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 50922 51254
YP_009194545.1 NC_028751_p21 minor tail protein phrog_2106 minor tail protein tail 1 21644 22807
YP_009194588.1 NC_028751_p64 hypothetical protein phrog_1849 unknown function unknown function 1 40690 40971
YP_009194542.1 NC_028751_p18 minor tail protein phrog_732 minor tail protein tail 1 16400 17230
YP_009194628.1 NC_028751_p104 hypothetical protein phrog_35039 unknown function unknown function 1 54962 55066
YP_009194617.1 NC_028751_p93 hypothetical protein phrog_1901 unknown function unknown function 1 51817 52008
YP_009194624.1 NC_028751_p100 hypothetical protein phrog_10123 unknown function unknown function 1 53397 53675
YP_009194527.1 NC_028751_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 672 2159
YP_009194601.1 NC_028751_p77 DNA methylase phrog_116 DNA methyltransferase other 1 44811 46556
YP_009194592.1 NC_028751_p68 HTH DNA-binding domain protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42216 42581
YP_009194559.1 NC_028751_p35 hypothetical protein phrog_2004 unknown function unknown function 1 28971 29204
YP_009194632.1 NC_028751_p108 hypothetical protein phrog_1385 unknown function unknown function 1 55909 56151
YP_009194583.1 NC_028751_p59 Xis domain protein phrog_66 excisionase and transcriptional regulator integration and excision 1 38796 38993
YP_009194525.1 NC_028751_p1 HNH endonuclease domain protein phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41 373
YP_009194627.1 NC_028751_p103 HTH DNA-binding domain protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 54680 54904
YP_009194570.1 NC_028751_p46 HTH binding domain phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31819 32016
YP_009194562.1 NC_028751_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30311 30403
YP_009194553.1 NC_028751_p29 hypothetical protein phrog_1172 unknown function unknown function 1 25697 25840
YP_009194636.1 NC_028751_p112 glycosyltransferase domain protein phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 57968 58579
YP_009194535.1 NC_028751_p11 hypothetical protein phrog_813 head-tail adaptor connector 1 6943 7347
YP_009194552.1 NC_028751_p28 hypothetical protein phrog_932 unknown function unknown function 1 25554 25700
YP_009194541.1 NC_028751_p17 minor tail protein phrog_110 minor tail protein tail 1 14636 16345
YP_009194566.1 NC_028751_p42 hypothetical protein phrog_3693 unknown function unknown function -1 31201 31320
YP_009194594.1 NC_028751_p70 hypothetical protein phrog_1834 unknown function unknown function 1 42733 42963
YP_009194567.1 NC_028751_p43 hypothetical protein phrog_2437 unknown function unknown function -1 31320 31487
YP_009194608.1 NC_028751_p84 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 49180 50031
YP_009194538.1 NC_028751_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8403 8954
YP_009194596.1 NC_028751_p72 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 43219 43797
YP_009194560.1 NC_028751_p36 hypothetical protein phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29191 30012
YP_009194569.1 NC_028751_p45 hypothetical protein phrog_14625 unknown function unknown function -1 31715 31837
YP_009194631.1 NC_028751_p107 hypothetical protein phrog_1186 unknown function unknown function 1 55508 55912
YP_009194634.1 NC_028751_p110 glycosyltransferase domain protein phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 56322 57758
YP_009194598.1 NC_028751_p74 hypothetical protein phrog_2070 unknown function unknown function 1 44153 44338
YP_009194579.1 NC_028751_p55 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 35977 36771
YP_009194543.1 NC_028751_p19 minor tail protein phrog_346 minor tail protein tail 1 17227 19764
YP_009194575.1 NC_028751_p51 hypothetical protein phrog_1948 unknown function unknown function -1 34208 34657
YP_009194537.1 NC_028751_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8403 9339
YP_009194587.1 NC_028751_p63 hypothetical protein phrog_8015 unknown function unknown function 1 40330 40611
YP_009194547.1 NC_028751_p23 hypothetical protein phrog_2005 minor tail protein tail 1 23185 23439
YP_009194550.1 NC_028751_p26 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 24917 25114
YP_009194589.1 NC_028751_p65 hypothetical protein phrog_658 unknown function unknown function 1 40968 41315
YP_009194572.1 NC_028751_p48 hypothetical protein phrog_25963 unknown function unknown function -1 32273 32401
YP_009194573.1 NC_028751_p49 hypothetical protein phrog_10321 unknown function unknown function -1 32442 32570
YP_009194586.1 NC_028751_p62 hypothetical protein phrog_1797 unknown function unknown function 1 39707 40312
YP_009194555.1 NC_028751_p31 lysin A phrog_700 endolysin lysis 1 26135 27328