| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028751 |
Definition |
Mycobacterium phage Quico, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58671 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
112 |
%GC |
61.68 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009194612.1 | NC_028751_p88 | hypothetical protein | phrog_5892 | unknown function | unknown function | 1 | 50679 | 50837 |
| YP_009194558.1 | NC_028751_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28573 | 28947 |
| YP_009194618.1 | NC_028751_p94 | hypothetical protein | phrog_6540 | unknown function | unknown function | 1 | 52005 | 52301 |
| YP_009194540.1 | NC_028751_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12846 | 14555 |
| YP_009194580.1 | NC_028751_p56 | hypothetical protein | phrog_18246 | unknown function | unknown function | 1 | 36774 | 37289 |
| YP_009194602.1 | NC_028751_p78 | DNA binding domain | phrog_6506 | Arc-like repressor | transcription regulation | -1 | 46525 | 46686 |
| YP_009194615.1 | NC_028751_p91 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51411 | 51695 |
| YP_009194563.1 | NC_028751_p39 | hypothetical protein | phrog_26953 | unknown function | unknown function | -1 | 30654 | 30770 |
| YP_009194551.1 | NC_028751_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25263 | 25547 |
| YP_009194585.1 | NC_028751_p61 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 39522 | 39710 |
| YP_009194620.1 | NC_028751_p96 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52459 | 52614 |
| YP_009194568.1 | NC_028751_p44 | hypothetical protein | phrog_12593 | unknown function | unknown function | -1 | 31548 | 31718 |
| YP_009194526.1 | NC_028751_p2 | hypothetical protein | phrog_4479 | terminase small subunit | head and packaging | 1 | 446 | 700 |
| YP_009194610.1 | NC_028751_p86 | hypothetical protein | phrog_2730 | unknown function | unknown function | 1 | 50288 | 50491 |
| YP_009194577.1 | NC_028751_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35456 | 35596 |
| YP_009194546.1 | NC_028751_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22821 | 23162 |
| YP_009194534.1 | NC_028751_p10 | hypothetical protein | phrog_1929 | head-tail connector protein | connector | 1 | 6627 | 6953 |
| YP_009194584.1 | NC_028751_p60 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 39037 | 39525 |
| YP_009194630.1 | NC_028751_p106 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 55225 | 55482 |
| YP_009194622.1 | NC_028751_p98 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 52837 | 53127 |
| YP_009194554.1 | NC_028751_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 25905 | 26138 |
| YP_009194603.1 | NC_028751_p79 | hypothetical protein | phrog_8485 | unknown function | unknown function | -1 | 46679 | 47056 |
| YP_009194590.1 | NC_028751_p66 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 41315 | 41722 |
| YP_009194607.1 | NC_028751_p83 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 49042 | 49176 |
| YP_009194625.1 | NC_028751_p101 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53678 | 53929 |
| YP_009194528.1 | NC_028751_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2197 | 3618 |
| YP_009194605.1 | NC_028751_p81 | hypothetical protein | phrog_2001 | unknown function | unknown function | 1 | 47428 | 47550 |
| YP_009194597.1 | NC_028751_p73 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43794 | 44156 |
| YP_009194557.1 | NC_028751_p33 | holin | phrog_443 | holin | lysis | 1 | 28343 | 28576 |
| YP_009194616.1 | NC_028751_p92 | hypothetical protein | phrog_4152 | unknown function | unknown function | 1 | 51692 | 51820 |
| YP_009194532.1 | NC_028751_p8 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5923 | 6294 |
| YP_009194565.1 | NC_028751_p41 | hypothetical protein | phrog_10332 | unknown function | unknown function | -1 | 31007 | 31201 |
| YP_009194623.1 | NC_028751_p99 | hypothetical protein | phrog_10901 | unknown function | unknown function | 1 | 53167 | 53400 |
| YP_009194533.1 | NC_028751_p9 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 6291 | 6620 |
| YP_009194611.1 | NC_028751_p87 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 50488 | 50682 |
| YP_009194539.1 | NC_028751_p15 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9357 | 12845 |
| YP_009194593.1 | NC_028751_p69 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 42581 | 42736 |
| YP_009194604.1 | NC_028751_p80 | hypothetical protein | phrog_8611 | unknown function | unknown function | -1 | 47063 | 47380 |
| YP_009194626.1 | NC_028751_p102 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 53926 | 54570 |
| YP_009194614.1 | NC_028751_p90 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 51241 | 51414 |
| YP_009194582.1 | NC_028751_p58 | hypothetical protein | phrog_15946 | unknown function | unknown function | 1 | 38300 | 38755 |
| YP_009194549.1 | NC_028751_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24087 | 24911 |
| YP_009194564.1 | NC_028751_p40 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 30760 | 31014 |
| YP_009194600.1 | NC_028751_p76 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 44464 | 44814 |
| YP_009194619.1 | NC_028751_p95 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52283 | 52477 |
| YP_009194629.1 | NC_028751_p105 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 55073 | 55228 |
| YP_009194529.1 | NC_028751_p5 | head maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3602 | 4327 |
| YP_009194606.1 | NC_028751_p82 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 47597 | 49045 |
| YP_009194536.1 | NC_028751_p12 | hypothetical protein | phrog_476 | major tail protein | tail | 1 | 7458 | 8267 |
| YP_009194609.1 | NC_028751_p85 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 50028 | 50291 |
| YP_009194544.1 | NC_028751_p20 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19761 | 21647 |
| YP_009194576.1 | NC_028751_p52 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 34923 | 35423 |
| YP_009194635.1 | NC_028751_p111 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57777 | 57971 |
| YP_009194591.1 | NC_028751_p67 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 41719 | 42219 |
| YP_009194633.1 | NC_028751_p109 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56144 | 56305 |
| YP_009194621.1 | NC_028751_p97 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 52611 | 52784 |
| YP_009194574.1 | NC_028751_p50 | integrase | phrog_1 | integrase | integration and excision | 1 | 32828 | 34129 |
| YP_009194571.1 | NC_028751_p47 | hypothetical protein | phrog_5254 | unknown function | unknown function | -1 | 32017 | 32268 |
| YP_009194599.1 | NC_028751_p75 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44316 | 44471 |
| YP_009194548.1 | NC_028751_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23452 | 24090 |
| YP_009194556.1 | NC_028751_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27328 | 28329 |
| YP_009194531.1 | NC_028751_p7 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5002 | 5910 |
| YP_009194561.1 | NC_028751_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30028 | 30318 |
| YP_009194530.1 | NC_028751_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4403 | 4939 |
| YP_009194578.1 | NC_028751_p54 | HTH DNA-binding domain protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 35617 | 35910 |
| YP_009194581.1 | NC_028751_p57 | hypothetical protein | phrog_4652 | unknown function | unknown function | 1 | 37686 | 38285 |
| YP_009194595.1 | NC_028751_p71 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 42960 | 43205 |
| YP_009194613.1 | NC_028751_p89 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 50922 | 51254 |
| YP_009194545.1 | NC_028751_p21 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 21644 | 22807 |
| YP_009194588.1 | NC_028751_p64 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40690 | 40971 |
| YP_009194542.1 | NC_028751_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16400 | 17230 |
| YP_009194628.1 | NC_028751_p104 | hypothetical protein | phrog_35039 | unknown function | unknown function | 1 | 54962 | 55066 |
| YP_009194617.1 | NC_028751_p93 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51817 | 52008 |
| YP_009194624.1 | NC_028751_p100 | hypothetical protein | phrog_10123 | unknown function | unknown function | 1 | 53397 | 53675 |
| YP_009194527.1 | NC_028751_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 672 | 2159 |
| YP_009194601.1 | NC_028751_p77 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 44811 | 46556 |
| YP_009194592.1 | NC_028751_p68 | HTH DNA-binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42216 | 42581 |
| YP_009194559.1 | NC_028751_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 28971 | 29204 |
| YP_009194632.1 | NC_028751_p108 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55909 | 56151 |
| YP_009194583.1 | NC_028751_p59 | Xis domain protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38796 | 38993 |
| YP_009194525.1 | NC_028751_p1 | HNH endonuclease domain protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| YP_009194627.1 | NC_028751_p103 | HTH DNA-binding domain protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 54680 | 54904 |
| YP_009194570.1 | NC_028751_p46 | HTH binding domain | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31819 | 32016 |
| YP_009194562.1 | NC_028751_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30311 | 30403 |
| YP_009194553.1 | NC_028751_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25697 | 25840 |
| YP_009194636.1 | NC_028751_p112 | glycosyltransferase domain protein | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57968 | 58579 |
| YP_009194535.1 | NC_028751_p11 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 6943 | 7347 |
| YP_009194552.1 | NC_028751_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25554 | 25700 |
| YP_009194541.1 | NC_028751_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14636 | 16345 |
| YP_009194566.1 | NC_028751_p42 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 31201 | 31320 |
| YP_009194594.1 | NC_028751_p70 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42733 | 42963 |
| YP_009194567.1 | NC_028751_p43 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 31320 | 31487 |
| YP_009194608.1 | NC_028751_p84 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 49180 | 50031 |
| YP_009194538.1 | NC_028751_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8403 | 8954 |
| YP_009194596.1 | NC_028751_p72 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43219 | 43797 |
| YP_009194560.1 | NC_028751_p36 | hypothetical protein | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29191 | 30012 |
| YP_009194569.1 | NC_028751_p45 | hypothetical protein | phrog_14625 | unknown function | unknown function | -1 | 31715 | 31837 |
| YP_009194631.1 | NC_028751_p107 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55508 | 55912 |
| YP_009194634.1 | NC_028751_p110 | glycosyltransferase domain protein | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56322 | 57758 |
| YP_009194598.1 | NC_028751_p74 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44153 | 44338 |
| YP_009194579.1 | NC_028751_p55 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35977 | 36771 |
| YP_009194543.1 | NC_028751_p19 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17227 | 19764 |
| YP_009194575.1 | NC_028751_p51 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34208 | 34657 |
| YP_009194537.1 | NC_028751_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8403 | 9339 |
| YP_009194587.1 | NC_028751_p63 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 40330 | 40611 |
| YP_009194547.1 | NC_028751_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23185 | 23439 |
| YP_009194550.1 | NC_028751_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24917 | 25114 |
| YP_009194589.1 | NC_028751_p65 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40968 | 41315 |
| YP_009194572.1 | NC_028751_p48 | hypothetical protein | phrog_25963 | unknown function | unknown function | -1 | 32273 | 32401 |
| YP_009194573.1 | NC_028751_p49 | hypothetical protein | phrog_10321 | unknown function | unknown function | -1 | 32442 | 32570 |
| YP_009194586.1 | NC_028751_p62 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39707 | 40312 |
| YP_009194555.1 | NC_028751_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26135 | 27328 |