Genomic map of Salmonella phage Shivani (NC_028754)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028754
Definition
Salmonella phage Shivani, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus.
DB of origin
REFSEQ
Length
120098
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
171
%GC
38.83
Number of singletons
2
Number of paralogs
35

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009194815.1 NC_028754_p171 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 119146 119685
YP_009194752.1 NC_028754_p108 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 64589 65170
YP_009194719.1 NC_028754_p75 hypothetical protein phrog_1491 tail fiber protein tail -1 39313 39951
YP_009194755.1 NC_028754_p111 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 67156 68046
YP_009194810.1 NC_028754_p166 hypothetical protein phrog_5607 unknown function unknown function 1 117386 117535
YP_009194661.1 NC_028754_p17 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 10171 10710
YP_009194672.1 NC_028754_p28 hypothetical protein phrog_4731 unknown function unknown function -1 15887 16213
YP_009194675.1 NC_028754_p31 hypothetical protein phrog_3880 unknown function unknown function -1 16884 17162
YP_009194778.1 NC_028754_p134 tail protein phrog_3889 base plate tail tube protein tail -1 94031 94933
YP_009194742.1 NC_028754_p98 hypothetical protein phrog_5291 unknown function unknown function 1 59083 59325
YP_009194685.1 NC_028754_p41 endolysin phrog_465 endolysin lysis -1 21795 22208
YP_009194765.1 NC_028754_p121 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 77796 78197
YP_009194799.1 NC_028754_p155 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 109097 109831
YP_009194702.1 NC_028754_p58 acetyltransferase phrog_1209 unknown function unknown function -1 30094 30462
YP_009194660.1 NC_028754_p16 hypothetical protein phrog_12351 unknown function unknown function 1 9442 9681
YP_009194681.1 NC_028754_p37 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 19983 20273
YP_009194761.1 NC_028754_p117 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 73565 74338
YP_009194787.1 NC_028754_p143 hypothetical protein phrog_3497 unknown function unknown function -1 101922 102359
YP_009194797.1 NC_028754_p153 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover 1 108219 108437
YP_009194781.1 NC_028754_p137 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 96860 97627
YP_009194693.1 NC_028754_p49 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 26508 27023
YP_009194708.1 NC_028754_p64 hypothetical protein phrog_5876 unknown function unknown function -1 32722 32994
YP_009194807.1 NC_028754_p163 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 114336 114677
YP_009194757.1 NC_028754_p113 hypothetical protein phrog_4386 unknown function unknown function 1 70669 71166
YP_009194758.1 NC_028754_p114 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 71256 72509
YP_009194707.1 NC_028754_p63 hypothetical protein phrog_7042 unknown function unknown function -1 32481 32672
YP_009194760.1 NC_028754_p116 hypothetical protein phrog_4258 unknown function unknown function 1 73210 73572
YP_009194700.1 NC_028754_p56 hypothetical protein phrog_5021 unknown function unknown function -1 29229 29576
YP_009194649.1 NC_028754_p5 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 3695 3892
YP_009194717.1 NC_028754_p73 spore cortex-lytic enzyme precursor phrog_938 endolysin lysis -1 37587 38036
YP_009194763.1 NC_028754_p119 recombination endonuclease phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 74905 75882
YP_009194809.1 NC_028754_p165 hypothetical protein phrog_6741 unknown function unknown function 1 116784 117278
YP_009194759.1 NC_028754_p115 HNH homing endonuclease phrog_4578 HNH endonuclease DNA, RNA and nucleotide metabolism 1 72712 73044
YP_009194800.1 NC_028754_p156 hypothetical protein phrog_4576 unknown function unknown function -1 109912 110304
YP_009194749.1 NC_028754_p105 NAD-dependent DNA ligase, subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 61813 62787
YP_009194802.1 NC_028754_p158 A1 protein phrog_1745 DNA transfer protein other -1 110906 112573
YP_009194798.1 NC_028754_p154 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 108424 108921
YP_009194720.1 NC_028754_p76 hypothetical protein phrog_5252 unknown function unknown function -1 40004 40186
YP_009194801.1 NC_028754_p157 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 110326 110835
YP_009194723.1 NC_028754_p79 hypothetical protein phrog_4516 unknown function unknown function -1 41267 41782
YP_009194804.1 NC_028754_p160 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 112957 113373
YP_009194743.1 NC_028754_p99 hypothetical protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 59395 60099
YP_009194735.1 NC_028754_p91 hypothetical protein phrog_7953 unknown function unknown function 1 53385 53666
YP_009194796.1 NC_028754_p152 hypothetical protein phrog_5851 unknown function unknown function 1 108032 108226
YP_009194727.1 NC_028754_p83 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 43670 44203
YP_009194652.1 NC_028754_p8 hypothetical protein phrog_4718 unknown function unknown function -1 4980 5183
YP_009194697.1 NC_028754_p53 hypothetical protein phrog_5486 unknown function unknown function -1 28166 28585
YP_009194753.1 NC_028754_p109 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 65163 66629
YP_009194776.1 NC_028754_p132 tape measure chaperone phrog_313 Tail assembly chaperone tail -1 93207 94038
YP_009194731.1 NC_028754_p87 hypothetical protein phrog_5357 tail length tape measure protein tail -1 49358 49555
YP_009194662.1 NC_028754_p18 hypothetical protein phrog_8583 unknown function unknown function -1 11839 12723
YP_009194741.1 NC_028754_p97 replication origin binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 56319 59108
YP_009194780.1 NC_028754_p136 hypothetical protein phrog_3907 tail terminator connector -1 96371 96856
YP_009194773.1 NC_028754_p129 tail protein phrog_31 central tail fiber J tail -1 85869 88718
YP_009194658.1 NC_028754_p14 hypothetical protein phrog_38314 unknown function unknown function 1 8777 8920
YP_009194814.1 NC_028754_p170 hypothetical protein phrog_12351 unknown function unknown function 1 118417 118656
YP_009194790.1 NC_028754_p146 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 104511 104993
YP_009194654.1 NC_028754_p10 hypothetical protein phrog_4263 unknown function unknown function 1 6757 7743
YP_009194710.1 NC_028754_p66 hypothetical protein phrog_5153 unknown function unknown function -1 33590 33796
YP_009194730.1 NC_028754_p86 ribonucleoside-diphosphate reductase, alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 45972 49214
YP_009194703.1 NC_028754_p59 hypothetical protein phrog_17200 unknown function unknown function -1 30546 30629
YP_009194732.1 NC_028754_p88 phosphate starvation inducible protein phrog_170 PhoH-like phosphate starvation-inducible other -1 49557 50309
YP_009194806.1 NC_028754_p162 hypothetical protein phrog_4718 unknown function unknown function -1 113955 114158
YP_009194738.1 NC_028754_p94 hypothetical protein phrog_2502 unknown function unknown function 1 54240 54668
YP_009194739.1 NC_028754_p95 hypothetical protein phrog_2502 unknown function unknown function 1 54678 55070
YP_009194648.1 NC_028754_p4 A1 protein phrog_1745 DNA transfer protein other -1 1931 3598
YP_009194671.1 NC_028754_p27 hypothetical protein phrog_5967 unknown function unknown function -1 15587 15787
YP_009194771.1 NC_028754_p127 minor tail protein phrog_1084 unknown function unknown function -1 83383 83805
YP_009194647.1 NC_028754_p3 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 1351 1860
YP_009194651.1 NC_028754_p7 hypothetical protein phrog_3747 unknown function unknown function -1 4500 4751
YP_009194750.1 NC_028754_p106 NAD-dependent DNA ligase, subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 62990 63769
YP_009194718.1 NC_028754_p74 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 38049 38870
YP_009194669.1 NC_028754_p25 hypothetical protein phrog_4905 unknown function unknown function -1 14810 15181
YP_009194782.1 NC_028754_p138 hypothetical protein phrog_442 head-tail adaptor connector -1 97627 98139
YP_009194737.1 NC_028754_p93 hypothetical protein phrog_1818 unknown function unknown function 1 53848 54237
YP_009194678.1 NC_028754_p34 phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 18362 19225
YP_009194676.1 NC_028754_p32 hypothetical protein phrog_4979 unknown function unknown function -1 17241 17672
YP_009194736.1 NC_028754_p92 hypothetical protein phrog_5236 unknown function unknown function 1 53676 53879
YP_009194772.1 NC_028754_p128 receptor binding tail protein phrog_3890 straight fibre tail protein tail -1 83812 85869
YP_009194768.1 NC_028754_p124 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 79551 79997
YP_009194690.1 NC_028754_p46 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 24723 25421
YP_009194653.1 NC_028754_p9 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 5361 5702
YP_009194734.1 NC_028754_p90 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover 1 51459 53285
YP_009194709.1 NC_028754_p65 hypothetical protein phrog_4551 unknown function unknown function -1 33224 33499
YP_009194657.1 NC_028754_p13 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 8563 8775
YP_009194770.1 NC_028754_p126 tail fiber protein phrog_5481 tail fiber protein tail -1 80498 83383
YP_009194793.1 NC_028754_p149 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 107210 107812
YP_009194705.1 NC_028754_p61 hypothetical protein phrog_3972 unknown function unknown function -1 31437 31784
YP_009194724.1 NC_028754_p80 hypothetical protein phrog_4593 unknown function unknown function -1 41866 42144
YP_009194795.1 NC_028754_p151 hypothetical protein phrog_6369 unknown function unknown function 1 107928 108035
YP_009194745.1 NC_028754_p101 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 60435 60845
YP_009194670.1 NC_028754_p26 hypothetical protein phrog_4215 unknown function unknown function -1 15129 15590
YP_009194701.1 NC_028754_p57 hypothetical protein phrog_4499 unknown function unknown function -1 29698 30012
YP_009194655.1 NC_028754_p11 hypothetical protein phrog_6741 unknown function unknown function 1 7809 8303
YP_009194692.1 NC_028754_p48 hypothetical protein phrog_4243 unknown function unknown function -1 25824 26504
YP_009194764.1 NC_028754_p120 nuclease phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 75863 77701
YP_009194666.1 NC_028754_p22 hypothetical protein phrog_9887 unknown function unknown function -1 13820 14110
YP_009194726.1 NC_028754_p82 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 42831 43670
YP_009194695.1 NC_028754_p51 hypothetical protein phrog_5265 unknown function unknown function -1 27638 27922
YP_009194646.1 NC_028754_p2 hypothetical protein phrog_4576 unknown function unknown function -1 937 1329
YP_009194747.1 NC_028754_p103 transcriptional co-activator phrog_4053 transcriptional regulator transcription regulation 1 61229 61537
YP_009194740.1 NC_028754_p96 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 55210 55662
YP_009194679.1 NC_028754_p35 hypothetical protein phrog_7354 major head protein head and packaging -1 19228 19473
YP_009194696.1 NC_028754_p52 hypothetical protein phrog_5792 unknown function unknown function -1 27919 28212
YP_009194713.1 NC_028754_p69 hypothetical protein phrog_200 lipoprotein other -1 34967 35914
YP_009194706.1 NC_028754_p62 hypothetical protein phrog_5473 unknown function unknown function -1 31896 32081
YP_009194774.1 NC_028754_p130 hypothetical protein phrog_1302 distal tail protein tail -1 88715 89329
YP_009194784.1 NC_028754_p140 prohead protease phrog_80 head maturation protease head and packaging -1 99593 100225
YP_009194794.1 NC_028754_p150 hypothetical protein phrog_8596 unknown function unknown function 1 107809 107928
YP_009194698.1 NC_028754_p54 hypothetical protein phrog_4821 unknown function unknown function -1 28578 28877
YP_009194663.1 NC_028754_p19 hypothetical protein phrog_5271 unknown function unknown function -1 12803 13414
YP_009194677.1 NC_028754_p33 metallophosphatase phrog_547 phosphoesterase other -1 17840 18361
YP_009194812.1 NC_028754_p168 hypothetical protein phrog_38314 unknown function unknown function 1 117752 117895
YP_009194769.1 NC_028754_p125 hypothetical protein singleton unknown function unknown function 1 79975 80082
YP_009194689.1 NC_028754_p45 o-spanin phrog_812 Rz-like spanin lysis -1 24382 24735
YP_009194682.1 NC_028754_p38 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 20287 20826
YP_009194813.1 NC_028754_p169 hypothetical protein phrog_4379 unknown function unknown function 1 117945 118289
YP_009194704.1 NC_028754_p60 hypothetical protein phrog_4760 unknown function unknown function -1 30740 31030
YP_009194683.1 NC_028754_p39 hypothetical protein phrog_4328 unknown function unknown function -1 20823 21227
YP_009194645.1 NC_028754_p1 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other -1 122 856
YP_009194721.1 NC_028754_p77 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 40257 40958
YP_009194674.1 NC_028754_p30 hypothetical protein phrog_4984 unknown function unknown function -1 16445 16720
YP_009194664.1 NC_028754_p20 hypothetical protein phrog_5799 unknown function unknown function -1 13414 13599
YP_009194805.1 NC_028754_p161 hypothetical protein phrog_3747 unknown function unknown function -1 113475 113726
YP_009194722.1 NC_028754_p78 hypothetical protein phrog_4586 unknown function unknown function -1 40987 41223
YP_009194725.1 NC_028754_p81 ribonuclease H phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 42221 42697
YP_009194673.1 NC_028754_p29 hypothetical protein phrog_4804 unknown function unknown function -1 16203 16448
YP_009194754.1 NC_028754_p110 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 66626 67159
YP_009194729.1 NC_028754_p85 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 45345 45869
YP_009194762.1 NC_028754_p118 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 74378 74908
YP_009194688.1 NC_028754_p44 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 23630 24382
YP_009194712.1 NC_028754_p68 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism -1 34163 34681
YP_009194766.1 NC_028754_p122 endonuclease phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 78197 78679
YP_009194711.1 NC_028754_p67 hypothetical protein phrog_7716 unknown function unknown function -1 33789 33956
YP_009194811.1 NC_028754_p167 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover 1 117538 117750
YP_009194687.1 NC_028754_p43 ATP-dependent Clp protease phrog_1827 ATP-dependent protease other -1 23018 23617
YP_009194756.1 NC_028754_p112 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 68109 70676
YP_009194656.1 NC_028754_p12 hypothetical protein phrog_5607 unknown function unknown function 1 8411 8560
YP_009194694.1 NC_028754_p50 hypothetical protein phrog_5468 unknown function unknown function -1 27174 27521
YP_009194789.1 NC_028754_p145 terminase large subunit phrog_2 terminase large subunit head and packaging -1 103195 104511
YP_009194714.1 NC_028754_p70 hypothetical protein phrog_11609 unknown function unknown function -1 35926 36126
YP_009194808.1 NC_028754_p164 hypothetical protein phrog_4263 unknown function unknown function 1 115732 116718
YP_009194686.1 NC_028754_p42 holin phrog_860 holin lysis -1 22205 22861
YP_009194791.1 NC_028754_p147 receptor binding protein phrog_4815 receptor binding tail protein tail -1 104993 106906
YP_009194650.1 NC_028754_p6 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 3982 4398
YP_009194691.1 NC_028754_p47 i-spanin phrog_739 Rz-like spanin lysis -1 25402 25827
YP_009194775.1 NC_028754_p131 tape measure protein phrog_3779 tail length tape measure protein tail -1 89438 93121
YP_009194788.1 NC_028754_p144 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism -1 102349 103023
YP_009194785.1 NC_028754_p141 tail protein phrog_2973 Hoc-like head decoration head and packaging -1 100229 100708
YP_009194777.1 NC_028754_p133 tape measure chaperone phrog_313 Tail assembly chaperone tail -1 93634 94038
YP_009194746.1 NC_028754_p102 hypothetical protein phrog_3696 unknown function unknown function 1 60882 61178
YP_009194665.1 NC_028754_p21 hypothetical protein phrog_6021 unknown function unknown function -1 13599 13832
YP_009194783.1 NC_028754_p139 major head protein precursor phrog_10 major head protein head and packaging -1 98199 99575
YP_009194779.1 NC_028754_p135 tail protein phrog_3575 major tail protein tail -1 94938 96344
YP_009194786.1 NC_028754_p142 portal protein phrog_12 portal protein head and packaging -1 100705 101922
YP_009194716.1 NC_028754_p72 hypothetical protein phrog_5077 unknown function unknown function -1 37348 37518
YP_009194744.1 NC_028754_p100 hypothetical protein phrog_643 transcriptional regulator transcription regulation 1 60092 60328
YP_009194751.1 NC_028754_p107 RNA polymerase sigma factor phrog_323 transcriptional regulator, D5-like transcription regulation 1 63762 64529
YP_009194667.1 NC_028754_p23 hypothetical protein phrog_4605 unknown function unknown function -1 14103 14591
YP_009194699.1 NC_028754_p55 hypothetical protein phrog_2855 unknown function unknown function -1 28870 29151
YP_009194767.1 NC_028754_p123 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 78679 79554
YP_009194748.1 NC_028754_p104 hypothetical protein phrog_8267 unknown function unknown function 1 61623 61823
YP_009194659.1 NC_028754_p15 hypothetical protein phrog_4379 unknown function unknown function 1 8970 9314
YP_009194728.1 NC_028754_p84 ribonucleoside diphosphate reductase, beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 44200 45345
YP_009194733.1 NC_028754_p89 hypothetical protein phrog_681 endonuclease DNA, RNA and nucleotide metabolism 1 50609 51472
YP_009194668.1 NC_028754_p24 hypothetical protein phrog_6933 unknown function unknown function -1 14551 14754
YP_009194792.1 NC_028754_p148 hypothetical protein singleton unknown function unknown function 1 107029 107355
YP_009194715.1 NC_028754_p71 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 36914 37348
YP_009194803.1 NC_028754_p159 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover -1 112670 112867
YP_009194680.1 NC_028754_p36 hypothetical protein phrog_6798 unknown function unknown function -1 19478 19855
YP_009194684.1 NC_028754_p40 hypothetical protein phrog_5944 unknown function unknown function -1 21303 21719