Genomic map of Clostridium phage phiCD505 (NC_028764)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028764
Definition
Clostridium phage phiCD505, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Lubbockvirus; unclassified Lubbockvirus.
DB of origin
REFSEQ
Length
49316
Host Name
Clostridium difficile
Host domain
Bacteria
Is prophage?
undef
Number of proteins
76
%GC
29.38
Number of singletons
0
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009195762.1 NC_028764_p2 terminase B phrog_2 terminase large subunit head and packaging 1 748 2166
YP_009195763.1 NC_028764_p3 portal protein phrog_64 portal protein head and packaging 1 2157 3659
YP_009195799.1 NC_028764_p39 hypothetical protein phrog_738 unknown function unknown function 1 30841 30984
YP_009195772.1 NC_028764_p12 hypothetical protein phrog_1939 unknown function unknown function 1 9467 9670
YP_009195822.1 NC_028764_p62 hypothetical protein phrog_98 unknown function unknown function 1 41313 41762
YP_009195802.1 NC_028764_p42 integrase phrog_1 integrase integration and excision -1 32575 33621
YP_009195776.1 NC_028764_p16 phage tail tape measure protein phrog_1272 tail length tape measure protein tail 1 12264 16592
YP_009195825.1 NC_028764_p65 phage DNA modification methylase phrog_116 DNA methyltransferase other 1 42151 43224
YP_009195810.1 NC_028764_p50 hypothetical protein phrog_9579 unknown function unknown function 1 36790 36960
YP_009195824.1 NC_028764_p64 hypothetical protein phrog_3565 unknown function unknown function 1 41865 42041
YP_009195835.1 NC_028764_p75 hypothetical protein phrog_36 transcriptional regulator transcription regulation 1 47569 48057
YP_009195834.1 NC_028764_p74 antirepressor phrog_463 anti-repressor transcription regulation 1 46578 47426
YP_009195828.1 NC_028764_p68 hypothetical protein phrog_6014 unknown function unknown function 1 44607 44936
YP_009195832.1 NC_028764_p72 hypothetical protein phrog_3794 unknown function unknown function 1 45959 46072
YP_009195765.1 NC_028764_p5 hypothetical protein phrog_3219 unknown function unknown function 1 4679 6013
YP_009195777.1 NC_028764_p17 exported protein of unknown function phrog_3793 unknown function unknown function 1 16672 17466
YP_009195782.1 NC_028764_p22 hypothetical protein phrog_6 baseplate wedge subunit tail 1 19966 21102
YP_009195795.1 NC_028764_p35 hypothetical protein phrog_9125 unknown function unknown function 1 28926 29417
YP_009195792.1 NC_028764_p32 hypothetical protein phrog_1193 hemolysin other 1 27357 27587
YP_009195815.1 NC_028764_p55 hypothetical protein phrog_2219 unknown function unknown function 1 38179 38421
YP_009195778.1 NC_028764_p18 peptidoglycan-binding LysM phrog_380 endolysin lysis 1 17536 18207
YP_009195821.1 NC_028764_p61 hypothetical protein phrog_2963 unknown function unknown function 1 41177 41326
YP_009195800.1 NC_028764_p40 hypothetical protein phrog_1077 transcriptional regulator transcription regulation 1 31492 31881
YP_009195774.1 NC_028764_p14 hypothetical protein phrog_365 tail protein tail 1 11109 11531
YP_009195773.1 NC_028764_p13 hypothetical protein phrog_279 tail sheath tail 1 9672 11093
YP_009195764.1 NC_028764_p4 head morphogenesis protein phrog_1657 head morphogenesis head and packaging 1 3646 4659
YP_009195814.1 NC_028764_p54 hypothetical protein phrog_1564 unknown function unknown function 1 37868 38080
YP_009195818.1 NC_028764_p58 hypothetical protein phrog_6251 replisome organizer DnaA-like DNA, RNA and nucleotide metabolism 1 39653 40513
YP_009195769.1 NC_028764_p9 hypothetical protein phrog_2405 unknown function unknown function 1 7843 8220
YP_009195807.1 NC_028764_p47 hypothetical protein phrog_582 Arc-like repressor transcription regulation -1 35488 35799
YP_009195761.1 NC_028764_p1 phage-related terminase small subunit phrog_509 terminase small subunit head and packaging 1 63 764
YP_009195794.1 NC_028764_p34 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 27864 28676
YP_009195826.1 NC_028764_p66 hypothetical protein phrog_2462 unknown function unknown function 1 43303 43524
YP_009195793.1 NC_028764_p33 Holin phrog_1129 holin lysis 1 27607 27864
YP_009195831.1 NC_028764_p71 hypothetical protein phrog_4279 unknown function unknown function 1 45602 45943
YP_009195809.1 NC_028764_p49 antirepressor phrog_463 anti-repressor transcription regulation 1 36093 36731
YP_009195775.1 NC_028764_p15 hypothetical protein phrog_389 tail protein XkdN-like tail 1 11610 12083
YP_009195811.1 NC_028764_p51 hypothetical protein phrog_12355 unknown function unknown function -1 36963 37196
YP_009195803.1 NC_028764_p43 cI repressor phrog_3 transcriptional repressor transcription regulation -1 33698 33883
YP_009195833.1 NC_028764_p73 endodeoxyribonuclease phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 46069 46476
YP_009195808.1 NC_028764_p48 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 35920 36090
YP_009195784.1 NC_028764_p24 tail fiber protein phrog_1162 tail fiber protein tail 1 21741 22847
YP_009195816.1 NC_028764_p56 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 38505 39014
YP_009195820.1 NC_028764_p60 hypothetical protein phrog_1310 unknown function unknown function 1 40852 41208
YP_009195823.1 NC_028764_p63 hypothetical protein phrog_6827 unknown function unknown function 1 41746 41862
YP_009195771.1 NC_028764_p11 hypothetical protein phrog_2146 unknown function unknown function 1 8633 9454
YP_009195796.1 NC_028764_p36 hypothetical protein phrog_9105 unknown function unknown function 1 29419 29985
YP_009195819.1 NC_028764_p59 hypothetical protein phrog_4601 unknown function unknown function 1 40583 40834
YP_009195806.1 NC_028764_p46 hypothetical protein phrog_582 Arc-like repressor transcription regulation 1 35365 35502
YP_009195827.1 NC_028764_p67 hypothetical protein phrog_1974 unknown function unknown function 1 43521 44525
YP_009195770.1 NC_028764_p10 conserved exported protein of unknown function phrog_5 tail completion or Neck1 protein connector 1 8222 8632
YP_009195767.1 NC_028764_p7 hypothetical protein phrog_3116 unknown function unknown function 1 6431 7468
YP_009195790.1 NC_028764_p30 hypothetical protein phrog_134 unknown function unknown function 1 25469 25606
YP_009195787.1 NC_028764_p27 hypothetical protein phrog_1243 unknown function unknown function 1 23721 23903
YP_009195829.1 NC_028764_p69 hypothetical protein phrog_4572 unknown function unknown function 1 44973 45344
YP_009195813.1 NC_028764_p53 ICEBs1 excisionase phrog_989 unknown function unknown function 1 37501 37710
YP_009195804.1 NC_028764_p44 hypothetical protein phrog_13216 unknown function unknown function 1 34199 34330
YP_009195780.1 NC_028764_p20 hypothetical protein phrog_2403 unknown function unknown function 1 19159 19524
YP_009195812.1 NC_028764_p52 Transcriptional regulator, Phage-type phrog_3 transcriptional repressor transcription regulation 1 37265 37462
YP_009195798.1 NC_028764_p38 hypothetical protein phrog_2569 unknown function unknown function -1 30395 30583
YP_009195797.1 NC_028764_p37 hypothetical protein phrog_17489 unknown function unknown function 1 30167 30319
YP_009195766.1 NC_028764_p6 hypothetical protein phrog_122 head decoration head and packaging 1 6029 6412
YP_009195779.1 NC_028764_p19 hypothetical protein phrog_400 tail protein tail 1 18204 19166
YP_009195783.1 NC_028764_p23 hypothetical protein phrog_521 tail protein tail 1 21099 21728
YP_009195817.1 NC_028764_p57 phage essential recombination function protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 39024 39638
YP_009195836.1 NC_028764_p76 hypothetical protein phrog_463 anti-repressor transcription regulation 1 48639 49316
YP_009195785.1 NC_028764_p25 hypothetical protein phrog_3361 unknown function unknown function 1 22861 23499
YP_009195801.1 NC_028764_p41 Transcriptional regulator, BlaI/MecI/CopY family phrog_1077 transcriptional regulator transcription regulation 1 31975 32358
YP_009195768.1 NC_028764_p8 hypothetical protein phrog_3029 unknown function unknown function 1 7508 7846
YP_009195791.1 NC_028764_p31 hypothetical protein phrog_1589 unknown function unknown function 1 25734 27299
YP_009195830.1 NC_028764_p70 hypothetical protein phrog_5599 unknown function unknown function 1 45347 45487
YP_009195805.1 NC_028764_p45 hypothetical protein phrog_8 transcriptional regulator transcription regulation -1 34347 34748
YP_009195788.1 NC_028764_p28 hypothetical protein phrog_4184 unknown function unknown function 1 23937 25172
YP_009195786.1 NC_028764_p26 hypothetical protein phrog_4196 unknown function unknown function 1 23509 23721
YP_009195781.1 NC_028764_p21 hypothetical protein phrog_120 baseplate wedge subunit tail 1 19499 19957
YP_009195789.1 NC_028764_p29 hypothetical protein phrog_3834 unknown function unknown function 1 25169 25468