| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028767 |
Definition |
Paenibacillus phage Vegas, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vegasvirus. |
DB of origin |
REFSEQ |
Length |
45653 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
86 |
%GC |
43.64 |
Number of singletons |
18 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009196106.1 | NC_028767_p7 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5290 | 5553 |
| YP_009196152.1 | NC_028767_p53 | hypothetical protein | phrog_9497 | unknown function | unknown function | 1 | 28619 | 28837 |
| YP_009196128.1 | NC_028767_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18238 | 18441 |
| YP_009196155.1 | NC_028767_p56 | hypothetical protein | phrog_36416 | unknown function | unknown function | 1 | 29302 | 29691 |
| YP_009196110.1 | NC_028767_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 6621 | 7217 |
| YP_009196115.1 | NC_028767_p16 | endopeptidase tail protein | phrog_538 | minor tail protein | tail | 1 | 12468 | 13586 |
| YP_009196119.1 | NC_028767_p20 | bacteriocin biosynthesis protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 15155 | 15385 |
| YP_009196159.1 | NC_028767_p60 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30347 | 30607 |
| YP_009196126.1 | NC_028767_p27 | hypothetical protein | phrog_24691 | unknown function | unknown function | -1 | 17831 | 18004 |
| YP_009196116.1 | NC_028767_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 13583 | 14665 |
| YP_009196114.1 | NC_028767_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 11599 | 12465 |
| YP_009196165.1 | NC_028767_p66 | hypothetical protein | phrog_1029 | unknown function | unknown function | 1 | 32633 | 33343 |
| YP_009196108.1 | NC_028767_p9 | head-tail joining protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5867 | 6259 |
| YP_009196133.1 | NC_028767_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 20583 | 20729 |
| YP_009196181.1 | NC_028767_p82 | antitoxin HicB | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | 1 | 43928 | 44338 |
| YP_009196145.1 | NC_028767_p46 | excisionase | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 26622 | 26915 |
| YP_009196100.1 | NC_028767_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| YP_009196113.1 | NC_028767_p14 | tail tape-measure protein | phrog_1272 | tail length tape measure protein | tail | 1 | 7894 | 11598 |
| YP_009196144.1 | NC_028767_p45 | DNA-binding anti-repressor | phrog_373 | anti-repressor | transcription regulation | 1 | 25861 | 26625 |
| YP_009196180.1 | NC_028767_p81 | toxin HicA | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 43714 | 43938 |
| YP_009196147.1 | NC_028767_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27592 | 27807 |
| YP_009196151.1 | NC_028767_p52 | hypothetical protein | phrog_13817 | unknown function | unknown function | 1 | 28324 | 28596 |
| YP_009196127.1 | NC_028767_p28 | hypothetical protein | phrog_19477 | unknown function | unknown function | -1 | 17982 | 18200 |
| YP_009196164.1 | NC_028767_p65 | replication terminator protein | phrog_997 | replication terminator | DNA, RNA and nucleotide metabolism | 1 | 32225 | 32596 |
| YP_009196178.1 | NC_028767_p79 | RinA family transcriptional regulator | phrog_36 | transcriptional regulator | transcription regulation | 1 | 42887 | 43315 |
| YP_009196125.1 | NC_028767_p26 | hypothetical protein | phrog_25315 | unknown function | unknown function | -1 | 17480 | 17752 |
| YP_009196158.1 | NC_028767_p59 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30155 | 30307 |
| YP_009196102.1 | NC_028767_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2066 | 3319 |
| YP_009196161.1 | NC_028767_p62 | hypothetical protein | phrog_31314 | unknown function | unknown function | 1 | 31309 | 31542 |
| YP_009196153.1 | NC_028767_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28848 | 29105 |
| YP_009196142.1 | NC_028767_p43 | restriction endonuclease | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 24631 | 25455 |
| YP_009196109.1 | NC_028767_p10 | prohead protease | phrog_78 | tail terminator | connector | 1 | 6256 | 6585 |
| YP_009196149.1 | NC_028767_p50 | hypothetical protein | phrog_10535 | unknown function | unknown function | 1 | 27932 | 28189 |
| YP_009196162.1 | NC_028767_p63 | hypothetical protein | phrog_18759 | unknown function | unknown function | 1 | 31561 | 31911 |
| YP_009196143.1 | NC_028767_p44 | hypothetical protein | phrog_26848 | unknown function | unknown function | 1 | 25475 | 25864 |
| YP_009196104.1 | NC_028767_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5164 |
| YP_009196163.1 | NC_028767_p64 | AbrB family transcriptional regulator | phrog_4681 | antitoxin from a toxin-antitoxin system | moron, auxiliary metabolic gene and host takeover | 1 | 31908 | 32192 |
| YP_009196117.1 | NC_028767_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 14675 | 15016 |
| YP_009196150.1 | NC_028767_p51 | hypothetical protein | phrog_13275 | unknown function | unknown function | 1 | 28146 | 28340 |
| YP_009196138.1 | NC_028767_p39 | toxin | phrog_87 | metallo-protease | other | -1 | 22890 | 23369 |
| YP_009196154.1 | NC_028767_p55 | hypothetical protein | phrog_22142 | unknown function | unknown function | 1 | 29098 | 29286 |
| YP_009196132.1 | NC_028767_p33 | hypothetical protein | phrog_9488 | unknown function | unknown function | 1 | 20313 | 20408 |
| YP_009196118.1 | NC_028767_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 15013 | 15174 |
| YP_009196101.1 | NC_028767_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| YP_009196135.1 | NC_028767_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21175 | 21420 |
| YP_009196105.1 | NC_028767_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5142 | 5297 |
| YP_009196157.1 | NC_028767_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29951 | 30109 |
| YP_009196167.1 | NC_028767_p68 | AAA domain ATPase | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 34722 | 35798 |
| YP_009196112.1 | NC_028767_p13 | hypothetical protein | phrog_22986 | unknown function | unknown function | 1 | 7771 | 7875 |
| YP_009196172.1 | NC_028767_p73 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40416 | 40538 |
| YP_009196131.1 | NC_028767_p32 | Arc-like DNA binding domain protein | singleton | unknown function | unknown function | 1 | 19975 | 20163 |
| YP_009196137.1 | NC_028767_p38 | integrase | phrog_1 | integrase | integration and excision | -1 | 21594 | 22835 |
| YP_009196103.1 | NC_028767_p4 | Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 3303 | 4025 |
| YP_009196141.1 | NC_028767_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24509 | 24604 |
| YP_009196139.1 | NC_028767_p40 | helix-turn-helix family domain XRE family transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 23375 | 24067 |
| YP_009196166.1 | NC_028767_p67 | chromosome segregation protein SMC | phrog_1499 | unknown function | unknown function | 1 | 33409 | 34719 |
| YP_009196107.1 | NC_028767_p8 | head-tail adaptor protein | phrog_25 | head closure Hc1 | connector | 1 | 5550 | 5870 |
| YP_009196174.1 | NC_028767_p75 | crossover junction endodeoxyribonuclease RusA | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 40940 | 41335 |
| YP_009196160.1 | NC_028767_p61 | DNA methylase | phrog_363 | DNA methyltransferase | other | 1 | 30614 | 31312 |
| YP_009196185.1 | NC_028767_p86 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 45255 | 45599 |
| YP_009196176.1 | NC_028767_p77 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 41562 | 42662 |
| YP_009196183.1 | NC_028767_p84 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44673 | 44876 |
| YP_009196129.1 | NC_028767_p30 | transposase | phrog_2331 | transposase | integration and excision | -1 | 18506 | 19729 |
| YP_009196121.1 | NC_028767_p22 | acetyltransferase | phrog_1384 | Mom-like DNA modification protein | other | 1 | 16065 | 16529 |
| YP_009196184.1 | NC_028767_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 44893 | 45243 |
| YP_009196136.1 | NC_028767_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21488 | 21577 |
| YP_009196120.1 | NC_028767_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_3088 | amidase | lysis | 1 | 15382 | 16053 |
| YP_009196146.1 | NC_028767_p47 | hypothetical protein | phrog_10141 | unknown function | unknown function | 1 | 26931 | 27569 |
| YP_009196171.1 | NC_028767_p72 | DNA primase | phrog_2597 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 38079 | 40385 |
| YP_009196122.1 | NC_028767_p23 | transposase | phrog_1299 | holin | lysis | 1 | 16549 | 16788 |
| YP_009196123.1 | NC_028767_p24 | hypothetical protein | phrog_9393 | unknown function | unknown function | 1 | 16923 | 17111 |
| YP_009196177.1 | NC_028767_p78 | hypothetical protein | phrog_1455 | unknown function | unknown function | 1 | 42696 | 42890 |
| YP_009196179.1 | NC_028767_p80 | phosphomannomutase | phrog_1454 | unknown function | unknown function | 1 | 43447 | 43650 |
| YP_009196140.1 | NC_028767_p41 | helix-turn-helix family domain XRE family transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 24169 | 24405 |
| YP_009196170.1 | NC_028767_p71 | ABC-type transport system, ATP-binding protein | phrog_3221 | unknown function | unknown function | 1 | 37955 | 38125 |
| YP_009196169.1 | NC_028767_p70 | DEAD/DEAH box helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 36339 | 37919 |
| YP_009196156.1 | NC_028767_p57 | hypothetical protein | phrog_30631 | unknown function | unknown function | 1 | 29688 | 29936 |
| YP_009196111.1 | NC_028767_p12 | hypothetical protein | phrog_2115 | tail protein | tail | 1 | 7289 | 7660 |
| YP_009196134.1 | NC_028767_p35 | stress protein | phrog_8870 | unknown function | unknown function | -1 | 20732 | 21211 |
| YP_009196124.1 | NC_028767_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17194 | 17466 |
| YP_009196182.1 | NC_028767_p83 | transglycosylase | phrog_1315 | unknown function | unknown function | 1 | 44387 | 44659 |
| YP_009196173.1 | NC_028767_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40597 | 40950 |
| YP_009196175.1 | NC_028767_p76 | hypothetical protein | phrog_3745 | unknown function | unknown function | 1 | 41339 | 41560 |
| YP_009196168.1 | NC_028767_p69 | hypothetical protein | phrog_2698 | unknown function | unknown function | 1 | 35823 | 36329 |
| YP_009196130.1 | NC_028767_p31 | ankyrin-repeat containing protein | singleton | unknown function | unknown function | 1 | 19685 | 19915 |
| YP_009196148.1 | NC_028767_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27804 | 27935 |