Genomic map of Paenibacillus phage Vegas (NC_028767)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028767
Definition
Paenibacillus phage Vegas, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vegasvirus.
DB of origin
REFSEQ
Length
45653
Host Name
Paenibacillus larvae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
86
%GC
43.64
Number of singletons
18
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009196106.1 NC_028767_p7 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 5290 5553
YP_009196152.1 NC_028767_p53 hypothetical protein phrog_9497 unknown function unknown function 1 28619 28837
YP_009196128.1 NC_028767_p29 hypothetical protein singleton unknown function unknown function -1 18238 18441
YP_009196155.1 NC_028767_p56 hypothetical protein phrog_36416 unknown function unknown function 1 29302 29691
YP_009196110.1 NC_028767_p11 major tail protein phrog_88 major tail protein tail 1 6621 7217
YP_009196115.1 NC_028767_p16 endopeptidase tail protein phrog_538 minor tail protein tail 1 12468 13586
YP_009196119.1 NC_028767_p20 bacteriocin biosynthesis protein phrog_2429 involved in bacteriocin production or immunity moron, auxiliary metabolic gene and host takeover 1 15155 15385
YP_009196159.1 NC_028767_p60 hypothetical protein singleton unknown function unknown function 1 30347 30607
YP_009196126.1 NC_028767_p27 hypothetical protein phrog_24691 unknown function unknown function -1 17831 18004
YP_009196116.1 NC_028767_p17 tail protein phrog_5339 virion structural protein head and packaging 1 13583 14665
YP_009196114.1 NC_028767_p15 tail protein phrog_33 distal tail protein Dit tail 1 11599 12465
YP_009196165.1 NC_028767_p66 hypothetical protein phrog_1029 unknown function unknown function 1 32633 33343
YP_009196108.1 NC_028767_p9 head-tail joining protein phrog_5 tail completion or Neck1 protein connector 1 5867 6259
YP_009196133.1 NC_028767_p34 hypothetical protein singleton unknown function unknown function -1 20583 20729
YP_009196181.1 NC_028767_p82 antitoxin HicB phrog_497 toxin-antitoxin system HicB-like moron, auxiliary metabolic gene and host takeover 1 43928 44338
YP_009196145.1 NC_028767_p46 excisionase phrog_66 excisionase and transcriptional regulator integration and excision 1 26622 26915
YP_009196100.1 NC_028767_p1 terminase small subunit phrog_361 terminase small subunit head and packaging 1 50 364
YP_009196113.1 NC_028767_p14 tail tape-measure protein phrog_1272 tail length tape measure protein tail 1 7894 11598
YP_009196144.1 NC_028767_p45 DNA-binding anti-repressor phrog_373 anti-repressor transcription regulation 1 25861 26625
YP_009196180.1 NC_028767_p81 toxin HicA phrog_353 toxin moron, auxiliary metabolic gene and host takeover 1 43714 43938
YP_009196147.1 NC_028767_p48 hypothetical protein singleton unknown function unknown function 1 27592 27807
YP_009196151.1 NC_028767_p52 hypothetical protein phrog_13817 unknown function unknown function 1 28324 28596
YP_009196127.1 NC_028767_p28 hypothetical protein phrog_19477 unknown function unknown function -1 17982 18200
YP_009196164.1 NC_028767_p65 replication terminator protein phrog_997 replication terminator DNA, RNA and nucleotide metabolism 1 32225 32596
YP_009196178.1 NC_028767_p79 RinA family transcriptional regulator phrog_36 transcriptional regulator transcription regulation 1 42887 43315
YP_009196125.1 NC_028767_p26 hypothetical protein phrog_25315 unknown function unknown function -1 17480 17752
YP_009196158.1 NC_028767_p59 hypothetical protein singleton unknown function unknown function 1 30155 30307
YP_009196102.1 NC_028767_p3 portal protein phrog_12 portal protein head and packaging 1 2066 3319
YP_009196161.1 NC_028767_p62 hypothetical protein phrog_31314 unknown function unknown function 1 31309 31542
YP_009196153.1 NC_028767_p54 hypothetical protein singleton unknown function unknown function 1 28848 29105
YP_009196142.1 NC_028767_p43 restriction endonuclease phrog_63 anti-repressor Ant transcription regulation 1 24631 25455
YP_009196109.1 NC_028767_p10 prohead protease phrog_78 tail terminator connector 1 6256 6585
YP_009196149.1 NC_028767_p50 hypothetical protein phrog_10535 unknown function unknown function 1 27932 28189
YP_009196162.1 NC_028767_p63 hypothetical protein phrog_18759 unknown function unknown function 1 31561 31911
YP_009196143.1 NC_028767_p44 hypothetical protein phrog_26848 unknown function unknown function 1 25475 25864
YP_009196104.1 NC_028767_p5 major capsid protein phrog_10 major head protein head and packaging 1 4022 5164
YP_009196163.1 NC_028767_p64 AbrB family transcriptional regulator phrog_4681 antitoxin from a toxin-antitoxin system moron, auxiliary metabolic gene and host takeover 1 31908 32192
YP_009196117.1 NC_028767_p18 hypothetical protein phrog_6220 unknown function unknown function 1 14675 15016
YP_009196150.1 NC_028767_p51 hypothetical protein phrog_13275 unknown function unknown function 1 28146 28340
YP_009196138.1 NC_028767_p39 toxin phrog_87 metallo-protease other -1 22890 23369
YP_009196154.1 NC_028767_p55 hypothetical protein phrog_22142 unknown function unknown function 1 29098 29286
YP_009196132.1 NC_028767_p33 hypothetical protein phrog_9488 unknown function unknown function 1 20313 20408
YP_009196118.1 NC_028767_p19 hypothetical protein phrog_134 unknown function unknown function 1 15013 15174
YP_009196101.1 NC_028767_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 345 2069
YP_009196135.1 NC_028767_p36 hypothetical protein singleton unknown function unknown function 1 21175 21420
YP_009196105.1 NC_028767_p6 hypothetical protein phrog_6793 unknown function unknown function 1 5142 5297
YP_009196157.1 NC_028767_p58 hypothetical protein singleton unknown function unknown function 1 29951 30109
YP_009196167.1 NC_028767_p68 AAA domain ATPase phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 34722 35798
YP_009196112.1 NC_028767_p13 hypothetical protein phrog_22986 unknown function unknown function 1 7771 7875
YP_009196172.1 NC_028767_p73 hypothetical protein singleton unknown function unknown function 1 40416 40538
YP_009196131.1 NC_028767_p32 Arc-like DNA binding domain protein singleton unknown function unknown function 1 19975 20163
YP_009196137.1 NC_028767_p38 integrase phrog_1 integrase integration and excision -1 21594 22835
YP_009196103.1 NC_028767_p4 Clp protease phrog_94 head maturation protease head and packaging 1 3303 4025
YP_009196141.1 NC_028767_p42 hypothetical protein singleton unknown function unknown function 1 24509 24604
YP_009196139.1 NC_028767_p40 helix-turn-helix family domain XRE family transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 23375 24067
YP_009196166.1 NC_028767_p67 chromosome segregation protein SMC phrog_1499 unknown function unknown function 1 33409 34719
YP_009196107.1 NC_028767_p8 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 5550 5870
YP_009196174.1 NC_028767_p75 crossover junction endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 40940 41335
YP_009196160.1 NC_028767_p61 DNA methylase phrog_363 DNA methyltransferase other 1 30614 31312
YP_009196185.1 NC_028767_p86 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 45255 45599
YP_009196176.1 NC_028767_p77 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 41562 42662
YP_009196183.1 NC_028767_p84 hypothetical protein singleton unknown function unknown function 1 44673 44876
YP_009196129.1 NC_028767_p30 transposase phrog_2331 transposase integration and excision -1 18506 19729
YP_009196121.1 NC_028767_p22 acetyltransferase phrog_1384 Mom-like DNA modification protein other 1 16065 16529
YP_009196184.1 NC_028767_p85 hypothetical protein singleton unknown function unknown function 1 44893 45243
YP_009196136.1 NC_028767_p37 hypothetical protein singleton unknown function unknown function 1 21488 21577
YP_009196120.1 NC_028767_p21 N-acetylmuramoyl-L-alanine amidase phrog_3088 amidase lysis 1 15382 16053
YP_009196146.1 NC_028767_p47 hypothetical protein phrog_10141 unknown function unknown function 1 26931 27569
YP_009196171.1 NC_028767_p72 DNA primase phrog_2597 DNA primase DNA, RNA and nucleotide metabolism 1 38079 40385
YP_009196122.1 NC_028767_p23 transposase phrog_1299 holin lysis 1 16549 16788
YP_009196123.1 NC_028767_p24 hypothetical protein phrog_9393 unknown function unknown function 1 16923 17111
YP_009196177.1 NC_028767_p78 hypothetical protein phrog_1455 unknown function unknown function 1 42696 42890
YP_009196179.1 NC_028767_p80 phosphomannomutase phrog_1454 unknown function unknown function 1 43447 43650
YP_009196140.1 NC_028767_p41 helix-turn-helix family domain XRE family transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 24169 24405
YP_009196170.1 NC_028767_p71 ABC-type transport system, ATP-binding protein phrog_3221 unknown function unknown function 1 37955 38125
YP_009196169.1 NC_028767_p70 DEAD/DEAH box helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 36339 37919
YP_009196156.1 NC_028767_p57 hypothetical protein phrog_30631 unknown function unknown function 1 29688 29936
YP_009196111.1 NC_028767_p12 hypothetical protein phrog_2115 tail protein tail 1 7289 7660
YP_009196134.1 NC_028767_p35 stress protein phrog_8870 unknown function unknown function -1 20732 21211
YP_009196124.1 NC_028767_p25 hypothetical protein singleton unknown function unknown function -1 17194 17466
YP_009196182.1 NC_028767_p83 transglycosylase phrog_1315 unknown function unknown function 1 44387 44659
YP_009196173.1 NC_028767_p74 hypothetical protein singleton unknown function unknown function 1 40597 40950
YP_009196175.1 NC_028767_p76 hypothetical protein phrog_3745 unknown function unknown function 1 41339 41560
YP_009196168.1 NC_028767_p69 hypothetical protein phrog_2698 unknown function unknown function 1 35823 36329
YP_009196130.1 NC_028767_p31 ankyrin-repeat containing protein singleton unknown function unknown function 1 19685 19915
YP_009196148.1 NC_028767_p49 hypothetical protein singleton unknown function unknown function 1 27804 27935