Genomic map of Pseudomonas phage PaMx11 (NC_028770)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028770
Definition
Pseudomonas phage PaMx11, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Abidjanvirus.
DB of origin
REFSEQ
Length
59878
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
81
%GC
64.45
Number of singletons
5
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009196299.1 NC_028770_p46 hypothetical protein phrog_6364 unknown function unknown function 1 37059 37937
YP_009196308.1 NC_028770_p55 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 43373 45313
YP_009196258.1 NC_028770_p5 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other 1 5695 6396
YP_009196311.1 NC_028770_p58 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 46222 46563
YP_009196323.1 NC_028770_p70 hypothetical protein phrog_8293 unknown function unknown function 1 54151 54369
YP_009196318.1 NC_028770_p65 hypothetical protein phrog_8514 unknown function unknown function 1 51156 51725
YP_009196312.1 NC_028770_p59 primase phrog_1829 DNA primase DNA, RNA and nucleotide metabolism 1 46550 48922
YP_009196286.1 NC_028770_p33 hypothetical protein phrog_5363 unknown function unknown function 1 25963 26319
YP_009196320.1 NC_028770_p67 hypothetical protein phrog_3633 unknown function unknown function 1 52140 52433
YP_009196271.1 NC_028770_p18 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 12440 12982
YP_009196260.1 NC_028770_p7 hypothetical protein singleton unknown function unknown function 1 6725 7027
YP_009196259.1 NC_028770_p6 hypothetical protein phrog_23157 unknown function unknown function 1 6435 6644
YP_009196264.1 NC_028770_p11 hypothetical protein phrog_22916 unknown function unknown function 1 8636 9145
YP_009196305.1 NC_028770_p52 HD domain-containing protein phrog_6047 unknown function unknown function 1 41734 42330
YP_009196287.1 NC_028770_p34 hypothetical protein phrog_26629 unknown function unknown function 1 26387 26863
YP_009196333.1 NC_028770_p80 hypothetical protein phrog_6858 unknown function unknown function 1 59242 59508
YP_009196298.1 NC_028770_p45 hypothetical protein phrog_7790 unknown function unknown function 1 36513 37007
YP_009196294.1 NC_028770_p41 hypothetical protein phrog_2402 unknown function unknown function 1 31343 32179
YP_009196274.1 NC_028770_p21 tail terminator protein phrog_179 tail terminator connector 1 13770 14180
YP_009196313.1 NC_028770_p60 hypothetical protein phrog_27372 unknown function unknown function 1 48922 49128
YP_009196310.1 NC_028770_p57 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism 1 45854 46264
YP_009196288.1 NC_028770_p35 endolysin phrog_1259 baseplate hub subunit and tail lysozyme tail 1 26860 27366
YP_009196277.1 NC_028770_p24 hypothetical protein phrog_4966 unknown function unknown function 1 15579 15878
YP_009196315.1 NC_028770_p62 nucleotide pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other 1 49701 50387
YP_009196275.1 NC_028770_p22 major tail structural protein phrog_290 minor tail protein tail 1 14192 15130
YP_009196296.1 NC_028770_p43 ribonucleotide reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 33512 34573
YP_009196255.1 NC_028770_p2 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1342 2832
YP_009196266.1 NC_028770_p13 hypothetical protein phrog_20571 unknown function unknown function 1 9555 9722
YP_009196295.1 NC_028770_p42 UvrD helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 32259 33449
YP_009196265.1 NC_028770_p12 hypothetical protein phrog_8760 unknown function unknown function 1 9275 9502
YP_009196263.1 NC_028770_p10 hypothetical protein singleton unknown function unknown function 1 8311 8592
YP_009196303.1 NC_028770_p50 hypothetical protein phrog_2396 unknown function unknown function 1 39786 40673
YP_009196289.1 NC_028770_p36 hypothetical protein phrog_1356 holin lysis 1 27413 27634
YP_009196334.1 NC_028770_p81 hypothetical protein phrog_464 unknown function unknown function 1 59495 59773
YP_009196321.1 NC_028770_p68 hypothetical protein phrog_27869 unknown function unknown function 1 52480 53088
YP_009196270.1 NC_028770_p17 virion structural protein phrog_19293 virion structural protein head and packaging 1 12217 12435
YP_009196328.1 NC_028770_p75 hypothetical protein phrog_3958 unknown function unknown function 1 56851 57105
YP_009196301.1 NC_028770_p48 acetyltransferase phrog_1249 acetyltransferase other 1 38791 39213
YP_009196309.1 NC_028770_p56 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 45310 45846
YP_009196330.1 NC_028770_p77 exonuclease phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 57486 58175
YP_009196272.1 NC_028770_p19 virion structural protein phrog_161 head closure Hc1 connector 1 12984 13373
YP_009196302.1 NC_028770_p49 hypothetical protein phrog_800 terminase small subunit head and packaging 1 39217 39786
YP_009196324.1 NC_028770_p71 hypothetical protein phrog_6077 unknown function unknown function 1 54399 55481
YP_009196304.1 NC_028770_p51 thymidylate synthase phrog_5131 thymidylate synthase DNA, RNA and nucleotide metabolism 1 40675 41721
YP_009196284.1 NC_028770_p31 hypothetical protein phrog_1196 tail assembly chaperone tail 1 23599 23805
YP_009196278.1 NC_028770_p25 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 15844 18321
YP_009196268.1 NC_028770_p15 major head protein phrog_212 major head protein head and packaging 1 10762 11682
YP_009196281.1 NC_028770_p28 virion structural protein phrog_1082 tail assembly protein tail 1 20886 22553
YP_009196279.1 NC_028770_p26 virion structural protein phrog_687 structural protein head and packaging 1 18331 19857
YP_009196256.1 NC_028770_p3 portal protein phrog_145 portal protein head and packaging 1 2889 4397
YP_009196293.1 NC_028770_p40 hypothetical protein phrog_2378 unknown function unknown function 1 30687 31238
YP_009196314.1 NC_028770_p61 hypothetical protein phrog_26943 unknown function unknown function 1 49204 49656
YP_009196280.1 NC_028770_p27 virion structural protein phrog_687 structural protein head and packaging 1 19869 20885
YP_009196297.1 NC_028770_p44 ribonucleotide reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 34554 36260
YP_009196326.1 NC_028770_p73 hypothetical protein phrog_4301 unknown function unknown function 1 55855 56283
YP_009196292.1 NC_028770_p39 hypothetical protein phrog_5888 unknown function unknown function 1 30235 30597
YP_009196316.1 NC_028770_p63 hypothetical protein phrog_7569 unknown function unknown function 1 50380 50760
YP_009196282.1 NC_028770_p29 virion structural protein phrog_778 tail assembly protein tail 1 22550 23359
YP_009196273.1 NC_028770_p20 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 13375 13773
YP_009196317.1 NC_028770_p64 hypothetical protein phrog_22559 unknown function unknown function 1 50771 51163
YP_009196269.1 NC_028770_p16 hypothetical protein phrog_6213 unknown function unknown function 1 11758 12213
YP_009196285.1 NC_028770_p32 virion structural protein phrog_1101 tail protein tail 1 23789 25963
YP_009196322.1 NC_028770_p69 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 53172 54077
YP_009196319.1 NC_028770_p66 hypothetical protein phrog_22281 unknown function unknown function 1 51794 52039
YP_009196262.1 NC_028770_p9 hypothetical protein singleton unknown function unknown function 1 8087 8296
YP_009196306.1 NC_028770_p53 hypothetical protein phrog_5839 unknown function unknown function 1 42327 42767
YP_009196290.1 NC_028770_p37 hypothetical protein phrog_2466 Rz-like spanin lysis 1 27609 28142
YP_009196300.1 NC_028770_p47 FAD dependent oxidoreductase phrog_16743 unknown function unknown function 1 37934 38794
YP_009196276.1 NC_028770_p23 hypothetical protein phrog_313 Tail assembly chaperone tail 1 15130 15573
YP_009196332.1 NC_028770_p79 hypothetical protein singleton unknown function unknown function 1 59061 59255
YP_009196331.1 NC_028770_p78 hypothetical protein singleton unknown function unknown function 1 58172 59086
YP_009196329.1 NC_028770_p76 hypothetical protein phrog_22459 unknown function unknown function 1 57275 57493
YP_009196327.1 NC_028770_p74 nucleotide triphosphate hydrolase phrog_10855 hydrolase other 1 56303 56854
YP_009196325.1 NC_028770_p72 hypothetical protein phrog_31477 unknown function unknown function 1 55481 55858
YP_009196257.1 NC_028770_p4 morphogenesis protein phrog_241 head morphogenesis head and packaging 1 4397 5644
YP_009196261.1 NC_028770_p8 hypothetical protein phrog_4750 unknown function unknown function 1 7243 8001
YP_009196291.1 NC_028770_p38 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 28668 30242
YP_009196254.1 NC_028770_p1 terminase small subunit phrog_4044 terminase small subunit head and packaging 1 830 1345
YP_009196307.1 NC_028770_p54 hypothetical protein phrog_22852 unknown function unknown function 1 42825 43373
YP_009196283.1 NC_028770_p30 virion structural protein phrog_1180 tail assembly chaperone tail 1 23369 23602
YP_009196267.1 NC_028770_p14 virion structural protein phrog_206 head scaffolding protein head and packaging 1 9831 10619