| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028776 |
Definition |
Enterobacteria phage CAjan, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Seuratvirus. |
DB of origin |
REFSEQ |
Length |
59670 |
Host Name |
Escherichia coli |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
91 |
%GC |
44.7 |
Number of singletons |
5 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009196804.1 | NC_028776_p10 | tail protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 7848 | 8255 |
| YP_009196832.1 | NC_028776_p38 | 6-carboxytetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | -1 | 30670 | 31191 |
| YP_009196852.1 | NC_028776_p58 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | -1 | 44011 | 44667 |
| YP_009196866.1 | NC_028776_p72 | hypothetical protein | phrog_27467 | unknown function | unknown function | 1 | 53052 | 53315 |
| YP_009196843.1 | NC_028776_p49 | nuclease | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | -1 | 38041 | 38949 |
| YP_009196813.1 | NC_028776_p19 | hypothetical protein | phrog_12984 | lipoprotein | other | -1 | 18311 | 18544 |
| YP_009196811.1 | NC_028776_p17 | peptidase | phrog_2134 | unknown function | unknown function | 1 | 14720 | 15154 |
| YP_009196878.1 | NC_028776_p84 | hypothetical protein | phrog_4049 | unknown function | unknown function | 1 | 56734 | 57159 |
| YP_009196860.1 | NC_028776_p66 | hypothetical protein | phrog_25978 | unknown function | unknown function | -1 | 50593 | 50919 |
| YP_009196848.1 | NC_028776_p54 | hypothetical protein | phrog_22347 | unknown function | unknown function | -1 | 42284 | 42514 |
| YP_009196870.1 | NC_028776_p76 | hypothetical protein | phrog_24875 | unknown function | unknown function | 1 | 54243 | 54494 |
| YP_009196820.1 | NC_028776_p26 | hypothetical protein | phrog_15669 | unknown function | unknown function | -1 | 24091 | 24372 |
| YP_009196865.1 | NC_028776_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 52826 | 53035 |
| YP_009196844.1 | NC_028776_p50 | hypothetical protein | phrog_13350 | unknown function | unknown function | -1 | 39015 | 39902 |
| YP_009196808.1 | NC_028776_p14 | tail length tape-measure protein | phrog_339 | tail length tape measure protein | tail | 1 | 10457 | 13573 |
| YP_009196819.1 | NC_028776_p25 | hypothetical protein | phrog_25697 | unknown function | unknown function | 1 | 23858 | 24061 |
| YP_009196846.1 | NC_028776_p52 | ATP-dependent DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | -1 | 40696 | 41610 |
| YP_009196815.1 | NC_028776_p21 | hypothetical protein | phrog_9288 | unknown function | unknown function | 1 | 21882 | 22589 |
| YP_009196805.1 | NC_028776_p11 | structural protein | phrog_179 | tail terminator | connector | 1 | 8255 | 8704 |
| YP_009196802.1 | NC_028776_p8 | structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 6958 | 7464 |
| YP_009196833.1 | NC_028776_p39 | hypothetical protein | phrog_24659 | unknown function | unknown function | -1 | 31193 | 31516 |
| YP_009196827.1 | NC_028776_p33 | DNA polymerase protein beta subunit | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | -1 | 27668 | 28621 |
| YP_009196824.1 | NC_028776_p30 | hypothetical protein | phrog_23744 | unknown function | unknown function | -1 | 25041 | 25334 |
| YP_009196877.1 | NC_028776_p83 | hypothetical protein | phrog_25149 | unknown function | unknown function | 1 | 56262 | 56732 |
| YP_009196863.1 | NC_028776_p69 | hypothetical protein | phrog_3199 | unknown function | unknown function | -1 | 52124 | 52372 |
| YP_009196884.1 | NC_028776_p90 | lysis regulatory protein | phrog_5975 | unknown function | unknown function | 1 | 59011 | 59487 |
| YP_009196829.1 | NC_028776_p35 | queuosine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | -1 | 28848 | 29768 |
| YP_009196841.1 | NC_028776_p47 | hypothetical protein | phrog_7864 | unknown function | unknown function | -1 | 35509 | 36003 |
| YP_009196850.1 | NC_028776_p56 | hypothetical protein | phrog_2480 | unknown function | unknown function | -1 | 43359 | 43817 |
| YP_009196828.1 | NC_028776_p34 | hypothetical protein | phrog_38388 | unknown function | unknown function | -1 | 28621 | 28848 |
| YP_009196858.1 | NC_028776_p64 | hypothetical protein | phrog_11967 | unknown function | unknown function | -1 | 48915 | 49118 |
| YP_009196879.1 | NC_028776_p85 | hypothetical protein | phrog_22841 | unknown function | unknown function | 1 | 57222 | 57407 |
| YP_009196862.1 | NC_028776_p68 | hypothetical protein | phrog_22313 | unknown function | unknown function | -1 | 51439 | 52050 |
| YP_009196875.1 | NC_028776_p81 | hypothetical protein | phrog_5321 | unknown function | unknown function | 1 | 55529 | 55798 |
| YP_009196871.1 | NC_028776_p77 | hypothetical protein | phrog_27099 | unknown function | unknown function | 1 | 54485 | 54763 |
| YP_009196837.1 | NC_028776_p43 | hypothetical protein | phrog_24420 | unknown function | unknown function | -1 | 33408 | 33596 |
| YP_009196798.1 | NC_028776_p4 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 3699 | 4571 |
| YP_009196859.1 | NC_028776_p65 | hypothetical protein | phrog_27223 | unknown function | unknown function | -1 | 49180 | 49962 |
| YP_009196803.1 | NC_028776_p9 | structural protein | phrog_161 | head closure Hc1 | connector | 1 | 7468 | 7848 |
| YP_009196868.1 | NC_028776_p74 | hypothetical protein | phrog_37795 | unknown function | unknown function | 1 | 53674 | 53814 |
| YP_009196842.1 | NC_028776_p48 | helicase-like protein | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 36063 | 38039 |
| YP_009196818.1 | NC_028776_p24 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 23562 | 23846 |
| YP_009196861.1 | NC_028776_p67 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 50970 | 51452 |
| YP_009196857.1 | NC_028776_p63 | primase | phrog_3022 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 46566 | 48908 |
| YP_009196797.1 | NC_028776_p3 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 2107 | 3603 |
| YP_009196807.1 | NC_028776_p13 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | 1 | 9652 | 10059 |
| YP_009196849.1 | NC_028776_p55 | hypothetical protein | phrog_27666 | unknown function | unknown function | -1 | 42526 | 43317 |
| YP_009196838.1 | NC_028776_p44 | radical SAM domain-containing protein | phrog_26258 | radical SAM domain-containing protein | other | -1 | 33589 | 33801 |
| YP_009196816.1 | NC_028776_p22 | hypothetical protein | phrog_9157 | unknown function | unknown function | 1 | 22661 | 23029 |
| YP_009196854.1 | NC_028776_p60 | hypothetical protein | phrog_25787 | unknown function | unknown function | -1 | 45562 | 45876 |
| YP_009196882.1 | NC_028776_p88 | hypothetical protein | phrog_873 | endolysin | head and packaging | 1 | 58212 | 58649 |
| YP_009196836.1 | NC_028776_p42 | queuosine biosynthesis QueC ATPase | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 32684 | 33406 |
| YP_009196831.1 | NC_028776_p37 | GTP cyclohydrolase I type 1 | phrog_2197 | GTP cyclohydrolase | other | -1 | 30043 | 30633 |
| YP_009196799.1 | NC_028776_p5 | capsid protein | phrog_247 | major head protein | head and packaging | 1 | 4694 | 5755 |
| YP_009196885.1 | NC_028776_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59465 | 59650 |
| YP_009196835.1 | NC_028776_p41 | preQ0 transporter | phrog_4899 | unknown function | unknown function | -1 | 32084 | 32563 |
| YP_009196834.1 | NC_028776_p40 | hypothetical protein | phrog_23361 | unknown function | unknown function | -1 | 31513 | 32082 |
| YP_009196826.1 | NC_028776_p32 | DNA polymerase B | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 25683 | 27668 |
| YP_009196817.1 | NC_028776_p23 | hypothetical protein | phrog_8329 | unknown function | unknown function | 1 | 23045 | 23575 |
| YP_009196822.1 | NC_028776_p28 | hypothetical protein | phrog_12090 | unknown function | unknown function | -1 | 24568 | 24759 |
| YP_009196881.1 | NC_028776_p87 | hypothetical protein | phrog_23528 | unknown function | unknown function | 1 | 57869 | 58129 |
| YP_009196840.1 | NC_028776_p46 | transcriptional activator FtrA domain-containing protein | phrog_11298 | unknown function | unknown function | -1 | 34578 | 35381 |
| YP_009196800.1 | NC_028776_p6 | structural protein | phrog_27336 | unknown function | unknown function | 1 | 5826 | 6149 |
| YP_009196853.1 | NC_028776_p59 | nuclease | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 44677 | 45144 |
| YP_009196856.1 | NC_028776_p62 | hypothetical protein | phrog_22269 | unknown function | unknown function | 1 | 46315 | 46539 |
| YP_009196812.1 | NC_028776_p18 | tail fiber protein | phrog_31 | central tail fiber J | tail | 1 | 15154 | 18276 |
| YP_009196810.1 | NC_028776_p16 | hypothetical protein | phrog_2048 | tail protein | tail | 1 | 14161 | 14745 |
| YP_009196839.1 | NC_028776_p45 | queuosine biosynthesis protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | -1 | 33801 | 34508 |
| YP_009196869.1 | NC_028776_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53842 | 54120 |
| YP_009196883.1 | NC_028776_p89 | holin protein | phrog_785 | holin | lysis | 1 | 58686 | 59030 |
| YP_009196796.1 | NC_028776_p2 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 563 | 2095 |
| YP_009196851.1 | NC_028776_p57 | hypothetical protein | phrog_17117 | unknown function | unknown function | -1 | 43833 | 44003 |
| YP_009196845.1 | NC_028776_p51 | DNA repair and recombination protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 39902 | 40630 |
| YP_009196801.1 | NC_028776_p7 | hypothetical protein | phrog_10966 | unknown function | unknown function | 1 | 6166 | 6819 |
| YP_009196814.1 | NC_028776_p20 | tail fiber protein | phrog_6578 | tail fiber protein | tail | 1 | 18627 | 21710 |
| YP_009196823.1 | NC_028776_p29 | hypothetical protein | phrog_22730 | unknown function | unknown function | -1 | 24802 | 25008 |
| YP_009196821.1 | NC_028776_p27 | hypothetical protein | phrog_23919 | unknown function | unknown function | -1 | 24369 | 24575 |
| YP_009196809.1 | NC_028776_p15 | tail protein | phrog_1302 | distal tail protein | tail | 1 | 13577 | 14161 |
| YP_009196874.1 | NC_028776_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55341 | 55532 |
| YP_009196876.1 | NC_028776_p82 | DNA binding protein | phrog_289 | GTP-binding domain | other | 1 | 55866 | 56258 |
| YP_009196806.1 | NC_028776_p12 | tail structural protein | phrog_290 | minor tail protein | tail | 1 | 8719 | 9642 |
| YP_009196825.1 | NC_028776_p31 | hypothetical protein | phrog_26834 | unknown function | unknown function | -1 | 25334 | 25618 |
| YP_009196830.1 | NC_028776_p36 | hypothetical protein | phrog_20065 | unknown function | unknown function | -1 | 29765 | 29971 |
| YP_009196873.1 | NC_028776_p79 | hypothetical protein | phrog_8826 | unknown function | unknown function | 1 | 55114 | 55338 |
| YP_009196880.1 | NC_028776_p86 | protease | phrog_1040 | peptidase HslV family | other | 1 | 57404 | 57868 |
| YP_009196847.1 | NC_028776_p53 | RNAse H | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 41619 | 42242 |
| YP_009196864.1 | NC_028776_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 52441 | 52653 |
| YP_009196855.1 | NC_028776_p61 | hypothetical protein | phrog_36709 | unknown function | unknown function | -1 | 45876 | 46073 |
| YP_009196795.1 | NC_028776_p1 | terminase small subunit | phrog_5334 | terminase small subunit | head and packaging | 1 | 1 | 558 |
| YP_009196867.1 | NC_028776_p73 | hypothetical protein | phrog_28005 | unknown function | unknown function | 1 | 53384 | 53668 |
| YP_009196872.1 | NC_028776_p78 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 54815 | 55117 |