| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028778 |
Definition |
Mycobacterium phage Snenia, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Bronvirus; unclassified Bronvirus. |
DB of origin |
REFSEQ |
Length |
75626 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
130 |
%GC |
59.27 |
Number of singletons |
11 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009197108.1 | NC_028778_p113 | hypothetical protein | phrog_3777 | unknown function | unknown function | -1 | 68059 | 68439 |
| YP_009197016.1 | NC_028778_p21 | minor tail protein | phrog_746 | minor tail protein | tail | 1 | 19725 | 22238 |
| YP_009197045.1 | NC_028778_p50 | hypothetical protein | phrog_2380 | unknown function | unknown function | 1 | 40073 | 40318 |
| YP_009197047.1 | NC_028778_p52 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 40574 | 40807 |
| YP_009197107.1 | NC_028778_p112 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 67131 | 67991 |
| YP_009197071.1 | NC_028778_p76 | HJ resolvase RusA-like protein | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 53434 | 53826 |
| YP_009197007.1 | NC_028778_p12 | hypothetical protein | phrog_5775 | head-tail connector protein | connector | 1 | 8183 | 8599 |
| YP_009197066.1 | NC_028778_p71 | hypothetical protein | phrog_6206 | unknown function | unknown function | 1 | 49760 | 49909 |
| YP_009197012.1 | NC_028778_p17 | tape measure protein | phrog_3547 | tail length tape measure protein | tail | 1 | 10976 | 16402 |
| YP_009197118.1 | NC_028778_p123 | hypothetical protein | singleton | unknown function | unknown function | -1 | 71788 | 71934 |
| YP_009197106.1 | NC_028778_p111 | hypothetical protein | singleton | unknown function | unknown function | -1 | 66863 | 66985 |
| YP_009197046.1 | NC_028778_p51 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40419 | 40577 |
| YP_009197032.1 | NC_028778_p37 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 33188 | 33979 |
| YP_009197053.1 | NC_028778_p58 | hypothetical protein | phrog_7425 | unknown function | unknown function | 1 | 43584 | 43775 |
| YP_009197104.1 | NC_028778_p109 | hypothetical protein | phrog_10592 | unknown function | unknown function | -1 | 66443 | 66694 |
| YP_009197018.1 | NC_028778_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23495 | 23878 |
| YP_009197000.1 | NC_028778_p5 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 1190 | 2755 |
| YP_009197028.1 | NC_028778_p33 | nucleotidyltransferase | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | -1 | 29648 | 30388 |
| YP_009197072.1 | NC_028778_p77 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 53795 | 54064 |
| YP_009196998.1 | NC_028778_p3 | hypothetical protein | phrog_18572 | unknown function | unknown function | 1 | 860 | 1048 |
| YP_009197057.1 | NC_028778_p62 | hypothetical protein | phrog_7527 | unknown function | unknown function | 1 | 45821 | 46117 |
| YP_009197100.1 | NC_028778_p105 | hypothetical protein | phrog_6170 | unknown function | unknown function | 1 | 65021 | 65407 |
| YP_009197004.1 | NC_028778_p9 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 6201 | 7361 |
| YP_009197085.1 | NC_028778_p90 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 59236 | 59643 |
| YP_009197003.1 | NC_028778_p8 | scaffolding protein | phrog_3760 | head scaffolding protein | head and packaging | 1 | 5542 | 6141 |
| YP_009197080.1 | NC_028778_p85 | ClP protease | phrog_94 | head maturation protease | head and packaging | 1 | 57328 | 57978 |
| YP_009197102.1 | NC_028778_p107 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 65859 | 65999 |
| YP_009197034.1 | NC_028778_p39 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34656 | 34955 |
| YP_009197013.1 | NC_028778_p18 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 16491 | 17381 |
| YP_009197030.1 | NC_028778_p35 | hypothetical protein | phrog_17141 | unknown function | unknown function | -1 | 31009 | 31392 |
| YP_009197099.1 | NC_028778_p104 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 64327 | 65034 |
| YP_009197122.1 | NC_028778_p127 | hypothetical protein | phrog_26014 | unknown function | unknown function | -1 | 74146 | 74469 |
| YP_009197081.1 | NC_028778_p86 | hypothetical protein | phrog_7495 | unknown function | unknown function | 1 | 57978 | 58523 |
| YP_009197093.1 | NC_028778_p98 | hypothetical protein | phrog_6027 | unknown function | unknown function | 1 | 62266 | 62385 |
| YP_009197098.1 | NC_028778_p103 | hypothetical protein | phrog_28919 | unknown function | unknown function | 1 | 63876 | 64130 |
| YP_009197116.1 | NC_028778_p121 | hypothetical protein | phrog_1909 | unknown function | unknown function | -1 | 70862 | 71689 |
| YP_009197088.1 | NC_028778_p93 | DNA-Q exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 60315 | 61097 |
| YP_009197067.1 | NC_028778_p72 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | 1 | 49891 | 50754 |
| YP_009197048.1 | NC_028778_p53 | RNA binding protein | phrog_850 | RNA-binding protein | DNA, RNA and nucleotide metabolism | 1 | 40819 | 42258 |
| YP_009197075.1 | NC_028778_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54603 | 54857 |
| YP_009197070.1 | NC_028778_p75 | hypothetical protein | phrog_6064 | unknown function | unknown function | 1 | 53251 | 53433 |
| YP_009197105.1 | NC_028778_p110 | hypothetical protein | phrog_32898 | unknown function | unknown function | -1 | 66726 | 66860 |
| YP_009197040.1 | NC_028778_p45 | hypothetical protein | phrog_17914 | unknown function | unknown function | 1 | 37832 | 38050 |
| YP_009197031.1 | NC_028778_p36 | integrase | phrog_1 | integrase | integration and excision | 1 | 31899 | 33191 |
| YP_009196996.1 | NC_028778_p1 | hypothetical protein | phrog_23622 | unknown function | unknown function | 1 | 84 | 473 |
| YP_009197022.1 | NC_028778_p27 | hypothetical protein | phrog_526 | holin | lysis | 1 | 26435 | 26851 |
| YP_009197074.1 | NC_028778_p79 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 54374 | 54613 |
| YP_009197020.1 | NC_028778_p25 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 24856 | 24963 |
| YP_009197103.1 | NC_028778_p108 | hypothetical protein | phrog_18249 | unknown function | unknown function | -1 | 66003 | 66437 |
| YP_009197015.1 | NC_028778_p20 | minor tail protein | phrog_4413 | minor tail protein | tail | 1 | 19276 | 19725 |
| YP_009197061.1 | NC_028778_p66 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 47235 | 47915 |
| YP_009197082.1 | NC_028778_p87 | hypothetical protein | phrog_20980 | unknown function | unknown function | 1 | 58524 | 58628 |
| YP_009197029.1 | NC_028778_p34 | Lsr2 DNA binding protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 30485 | 30922 |
| YP_009197037.1 | NC_028778_p42 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 35731 | 36054 |
| YP_009197052.1 | NC_028778_p57 | hypothetical protein | phrog_5858 | unknown function | unknown function | 1 | 43418 | 43594 |
| YP_009197114.1 | NC_028778_p119 | hypothetical protein | phrog_6176 | unknown function | unknown function | 1 | 69875 | 70330 |
| YP_009197076.1 | NC_028778_p81 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 54917 | 55414 |
| YP_009197111.1 | NC_028778_p116 | hypothetical protein | phrog_6004 | unknown function | unknown function | -1 | 68964 | 69248 |
| YP_009197035.1 | NC_028778_p40 | DNA binding protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 34952 | 35167 |
| YP_009197063.1 | NC_028778_p68 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 49174 | 49455 |
| YP_009197087.1 | NC_028778_p92 | hypothetical protein | phrog_4472 | nucleotide kinase | other | 1 | 59977 | 60318 |
| YP_009197096.1 | NC_028778_p101 | hypothetical protein | phrog_10290 | unknown function | unknown function | 1 | 62891 | 63094 |
| YP_009196999.1 | NC_028778_p4 | hypothetical protein | phrog_17068 | unknown function | unknown function | 1 | 1041 | 1190 |
| YP_009197042.1 | NC_028778_p47 | hypothetical protein | phrog_17191 | unknown function | unknown function | 1 | 38332 | 38508 |
| YP_009197083.1 | NC_028778_p88 | hypothetical protein | phrog_2218 | unknown function | unknown function | 1 | 58625 | 58855 |
| YP_009197041.1 | NC_028778_p46 | hypothetical protein | phrog_6017 | unknown function | unknown function | 1 | 38040 | 38354 |
| YP_009197005.1 | NC_028778_p10 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7372 | 7848 |
| YP_009197113.1 | NC_028778_p118 | hypothetical protein | phrog_6968 | unknown function | unknown function | -1 | 69402 | 69602 |
| YP_009197124.1 | NC_028778_p129 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74613 | 74726 |
| YP_009197033.1 | NC_028778_p38 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 34134 | 34517 |
| YP_009197051.1 | NC_028778_p56 | hypothetical protein | phrog_17581 | unknown function | unknown function | 1 | 43288 | 43440 |
| YP_009197025.1 | NC_028778_p30 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 28375 | 28794 |
| YP_009197008.1 | NC_028778_p13 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8609 | 9094 |
| YP_009197050.1 | NC_028778_p55 | hypothetical protein | phrog_5872 | unknown function | unknown function | 1 | 42974 | 43291 |
| YP_009197091.1 | NC_028778_p96 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61624 | 62043 |
| YP_009197123.1 | NC_028778_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 74440 | 74607 |
| YP_009197121.1 | NC_028778_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73719 | 74051 |
| YP_009197058.1 | NC_028778_p63 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 46110 | 46481 |
| YP_009197026.1 | NC_028778_p31 | NrdH glutaredoxin protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 28785 | 29051 |
| YP_009197055.1 | NC_028778_p60 | hypothetical protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 44746 | 45531 |
| YP_009197059.1 | NC_028778_p64 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 46468 | 46800 |
| YP_009197112.1 | NC_028778_p117 | hypothetical protein | phrog_8547 | unknown function | unknown function | -1 | 69251 | 69400 |
| YP_009197036.1 | NC_028778_p41 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 35164 | 35559 |
| YP_009197062.1 | NC_028778_p67 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 47912 | 49177 |
| YP_009197027.1 | NC_028778_p32 | hypothetical protein | phrog_6558 | unknown function | unknown function | -1 | 29362 | 29637 |
| YP_009197021.1 | NC_028778_p26 | lysin A | phrog_317 | endolysin | lysis | 1 | 24963 | 26435 |
| YP_009197010.1 | NC_028778_p15 | tail assembly chaperone | phrog_4464 | tail assembly chaperone | tail | 1 | 10125 | 10400 |
| YP_009197069.1 | NC_028778_p74 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 52313 | 53251 |
| YP_009197006.1 | NC_028778_p11 | hypothetical protein | phrog_5309 | head-tail adaptor | connector | 1 | 7845 | 8183 |
| YP_009197110.1 | NC_028778_p115 | hypothetical protein | phrog_7390 | unknown function | unknown function | -1 | 68685 | 68879 |
| YP_009197077.1 | NC_028778_p82 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 55407 | 55790 |
| YP_009197084.1 | NC_028778_p89 | hypothetical protein | phrog_1969 | unknown function | unknown function | 1 | 58848 | 59186 |
| YP_009197117.1 | NC_028778_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71663 | 71791 |
| YP_009197073.1 | NC_028778_p78 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 54061 | 54384 |
| YP_009197101.1 | NC_028778_p106 | hypothetical protein | phrog_20848 | unknown function | unknown function | -1 | 65614 | 65862 |
| YP_009197019.1 | NC_028778_p24 | hypothetical protein | phrog_3856 | minor tail protein | tail | 1 | 23890 | 24831 |
| YP_009197119.1 | NC_028778_p124 | AAA-ATPase | phrog_249 | porphyrin biosynthesis | moron, auxiliary metabolic gene and host takeover | -1 | 72068 | 73270 |
| YP_009197109.1 | NC_028778_p114 | hypothetical protein | phrog_6224 | unknown function | unknown function | -1 | 68480 | 68710 |
| YP_009197014.1 | NC_028778_p19 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 17374 | 19137 |
| YP_009197092.1 | NC_028778_p97 | hypothetical protein | phrog_3699 | unknown function | unknown function | 1 | 62043 | 62273 |
| YP_009197086.1 | NC_028778_p91 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 59730 | 59999 |
| YP_009197125.1 | NC_028778_p130 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75361 | 75531 |
| YP_009197120.1 | NC_028778_p125 | hypothetical protein | singleton | unknown function | unknown function | -1 | 73329 | 73619 |
| YP_009197090.1 | NC_028778_p95 | hypothetical protein | phrog_6439 | unknown function | unknown function | 1 | 61231 | 61473 |
| YP_009197009.1 | NC_028778_p14 | major tail protein | phrog_476 | major tail protein | tail | 1 | 9124 | 10026 |
| YP_009197078.1 | NC_028778_p83 | hypothetical protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 55815 | 56033 |
| YP_009197115.1 | NC_028778_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70411 | 70581 |
| YP_009197079.1 | NC_028778_p84 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 56030 | 57328 |
| YP_009197017.1 | NC_028778_p22 | minor tail protein | phrog_416 | minor tail protein | tail | 1 | 22248 | 23465 |
| YP_009197049.1 | NC_028778_p54 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 42640 | 42981 |
| YP_009196997.1 | NC_028778_p2 | hypothetical protein | phrog_1496 | terminase small subunit | head and packaging | 1 | 481 | 852 |
| YP_009197024.1 | NC_028778_p29 | hypothetical protein | phrog_5963 | holin | lysis | 1 | 27908 | 28372 |
| YP_009197097.1 | NC_028778_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63240 | 63464 |
| YP_009197044.1 | NC_028778_p49 | hypothetical protein | phrog_4870 | unknown function | unknown function | 1 | 39681 | 40076 |
| YP_009197023.1 | NC_028778_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26851 | 27894 |
| YP_009197043.1 | NC_028778_p48 | membrane protein band-7-like protein | phrog_200 | lipoprotein | other | 1 | 38577 | 39509 |
| YP_009197060.1 | NC_028778_p65 | hypothetical protein | phrog_2693 | unknown function | unknown function | 1 | 46781 | 47242 |
| YP_009197068.1 | NC_028778_p73 | ribose-phosphate pyrophosphokinase | phrog_448 | nicotinamide phosphoribosyl transferase | other | 1 | 50751 | 52226 |
| YP_009197065.1 | NC_028778_p70 | hypothetical protein | phrog_18534 | unknown function | unknown function | 1 | 49609 | 49767 |
| YP_009197038.1 | NC_028778_p43 | hypothetical protein | phrog_5916 | unknown function | unknown function | 1 | 36477 | 36839 |
| YP_009197095.1 | NC_028778_p100 | hypothetical protein | phrog_6800 | unknown function | unknown function | 1 | 62619 | 62792 |
| YP_009197089.1 | NC_028778_p94 | hypothetical protein | phrog_397 | unknown function | unknown function | 1 | 61097 | 61231 |
| YP_009197094.1 | NC_028778_p99 | hypothetical protein | phrog_14116 | unknown function | unknown function | 1 | 62369 | 62626 |
| YP_009197056.1 | NC_028778_p61 | ERF family ssDNA binding protein | phrog_5917 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45531 | 45803 |
| YP_009197054.1 | NC_028778_p59 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44015 | 44752 |
| YP_009197039.1 | NC_028778_p44 | hypothetical protein | phrog_1649 | metallo-phosphoesterase | other | 1 | 37023 | 37832 |
| YP_009197011.1 | NC_028778_p16 | tail assembly chaperone | phrog_18272 | tail assembly chaperone | tail | 1 | 10432 | 10947 |
| YP_009197002.1 | NC_028778_p7 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 4416 | 5486 |
| YP_009197064.1 | NC_028778_p69 | hypothetical protein | phrog_23047 | unknown function | unknown function | 1 | 49406 | 49612 |
| YP_009197001.1 | NC_028778_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2756 | 4399 |