Genomic map of Mycobacterium phage Carcharodon (NC_028779)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028779
Definition
Mycobacterium phage Carcharodon, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nclasvirinae; Charlievirus; unclassified Charlievirus.
DB of origin
REFSEQ
Length
43680
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
71
%GC
66.24
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009197171.1 NC_028779_p46 hypothetical protein phrog_11506 unknown function unknown function 1 32101 32445
YP_009197196.1 NC_028779_p71 hypothetical protein phrog_1808 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43194 43493
YP_009197178.1 NC_028779_p53 hypothetical protein phrog_21446 unknown function unknown function 1 35703 35867
YP_009197168.1 NC_028779_p43 hypothetical protein phrog_16008 unknown function unknown function 1 31045 31455
YP_009197164.1 NC_028779_p39 hypothetical protein phrog_3507 unknown function unknown function 1 29459 29845
YP_009197189.1 NC_028779_p64 hypothetical protein phrog_2149 replication initiation protein DNA, RNA and nucleotide metabolism 1 39504 40397
YP_009197146.1 NC_028779_p21 hypothetical protein phrog_14065 unknown function unknown function 1 19550 20191
YP_009197186.1 NC_028779_p61 HNH endonuclease phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 38739 39203
YP_009197132.1 NC_028779_p7 head-to-tail connector phrog_7530 unknown function unknown function 1 5730 5963
YP_009197158.1 NC_028779_p33 hypothetical protein phrog_16062 unknown function unknown function -1 26511 26708
YP_009197160.1 NC_028779_p35 hypothetical protein phrog_1712 unknown function unknown function -1 27372 27713
YP_009197134.1 NC_028779_p9 head-to-tail connector phrog_1531 head closure connector 1 6438 6782
YP_009197184.1 NC_028779_p59 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 37883 38215
YP_009197150.1 NC_028779_p25 hypothetical protein phrog_1172 unknown function unknown function 1 22166 22348
YP_009197176.1 NC_028779_p51 hypothetical protein phrog_3821 unknown function unknown function 1 35150 35425
YP_009197142.1 NC_028779_p17 minor tail protein phrog_106 minor tail protein tail 1 13268 14989
YP_009197145.1 NC_028779_p20 minor tail protein phrog_3493 minor tail protein tail 1 17556 19550
YP_009197131.1 NC_028779_p6 major capsid protein phrog_10 major head protein head and packaging 1 4372 5664
YP_009197192.1 NC_028779_p67 hypothetical protein phrog_908 unknown function unknown function 1 41567 42232
YP_009197139.1 NC_028779_p14 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 9036 9942
YP_009197144.1 NC_028779_p19 minor tail protein phrog_732 minor tail protein tail 1 16714 17556
YP_009197147.1 NC_028779_p22 hypothetical protein phrog_17035 minor tail protein tail 1 20220 21437
YP_009197127.1 NC_028779_p2 terminase phrog_9 terminase large subunit head and packaging 1 504 2036
YP_009197137.1 NC_028779_p12 head-to-tail connector phrog_813 head-tail adaptor connector 1 7343 7762
YP_009197174.1 NC_028779_p49 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34516 34908
YP_009197128.1 NC_028779_p3 hypothetical protein phrog_6750 unknown function unknown function 1 2029 2235
YP_009197194.1 NC_028779_p69 hypothetical protein phrog_1186 unknown function unknown function 1 42519 42974
YP_009197163.1 NC_028779_p38 Xis phrog_4583 transcriptional repressor transcription regulation 1 29181 29462
YP_009197195.1 NC_028779_p70 hypothetical protein phrog_1385 unknown function unknown function 1 42971 43216
YP_009197180.1 NC_028779_p55 hypothetical protein phrog_419 unknown function unknown function 1 36177 36665
YP_009197159.1 NC_028779_p34 hypothetical protein singleton unknown function unknown function -1 26705 27178
YP_009197162.1 NC_028779_p37 immunity repressor phrog_2328 transcriptional repressor transcription regulation -1 28724 29095
YP_009197135.1 NC_028779_p10 head-to-tail connector phrog_8006 neck protein connector 1 6794 6988
YP_009197183.1 NC_028779_p58 hypothetical protein phrog_647 unknown function unknown function 1 37518 37880
YP_009197175.1 NC_028779_p50 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 34905 35153
YP_009197126.1 NC_028779_p1 hypothetical protein phrog_6975 unknown function unknown function 1 64 504
YP_009197191.1 NC_028779_p66 hypothetical protein phrog_15405 unknown function unknown function 1 40989 41570
YP_009197136.1 NC_028779_p11 head-to-tail connector phrog_2325 minor tail protein tail 1 6975 7346
YP_009197179.1 NC_028779_p54 hypothetical protein phrog_19256 unknown function unknown function 1 35861 36160
YP_009197155.1 NC_028779_p30 hypothetical protein phrog_404 minor tail protein tail 1 24740 25120
YP_009197141.1 NC_028779_p16 tapemeasure phrog_2337 tail length tape measure protein tail 1 10123 13266
YP_009197190.1 NC_028779_p65 hypothetical protein phrog_3599 unknown function unknown function 1 40394 40996
YP_009197143.1 NC_028779_p18 minor tail protein phrog_110 minor tail protein tail 1 14989 16698
YP_009197187.1 NC_028779_p62 hypothetical protein phrog_1311 unknown function unknown function 1 39203 39346
YP_009197138.1 NC_028779_p13 major tail subunit phrog_476 major tail protein tail 1 7877 8935
YP_009197165.1 NC_028779_p40 hypothetical protein phrog_5081 unknown function unknown function 1 29955 30341
YP_009197166.1 NC_028779_p41 hypothetical protein phrog_9601 unknown function unknown function 1 30399 30653
YP_009197133.1 NC_028779_p8 head-to-tail connector phrog_442 head-tail adaptor connector 1 5956 6441
YP_009197152.1 NC_028779_p27 hypothetical protein phrog_747 unknown function unknown function 1 22565 22837
YP_009197181.1 NC_028779_p56 hypothetical protein phrog_20215 unknown function unknown function 1 36662 36964
YP_009197151.1 NC_028779_p26 hypothetical protein phrog_6832 unknown function unknown function 1 22348 22533
YP_009197173.1 NC_028779_p48 RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33458 34519
YP_009197172.1 NC_028779_p47 RecE phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 32442 33452
YP_009197193.1 NC_028779_p68 hypothetical protein phrog_1694 unknown function unknown function 1 42355 42579
YP_009197157.1 NC_028779_p32 hypothetical protein phrog_12868 unknown function unknown function 1 26349 26489
YP_009197149.1 NC_028779_p24 hypothetical protein phrog_3758 virion structural protein head and packaging 1 21744 22169
YP_009197182.1 NC_028779_p57 hypothetical protein phrog_26354 unknown function unknown function 1 36967 37521
YP_009197170.1 NC_028779_p45 WhiB phrog_1333 unknown function unknown function 1 31721 32104
YP_009197156.1 NC_028779_p31 hypothetical protein phrog_3243 unknown function unknown function 1 25394 26326
YP_009197154.1 NC_028779_p29 holin phrog_526 holin lysis 1 24339 24743
YP_009197161.1 NC_028779_p36 integrase phrog_1 integrase integration and excision -1 27747 28718
YP_009197153.1 NC_028779_p28 lysin A phrog_1519 endolysin lysis 1 22834 24342
YP_009197130.1 NC_028779_p5 capsid maturation protease phrog_80 head maturation protease head and packaging 1 3538 4344
YP_009197188.1 NC_028779_p63 hypothetical protein phrog_2451 unknown function unknown function 1 39343 39504
YP_009197129.1 NC_028779_p4 portal protein phrog_12 portal protein head and packaging 1 2249 3538
YP_009197167.1 NC_028779_p42 hypothetical protein phrog_549 unknown function unknown function 1 30650 31048
YP_009197140.1 NC_028779_p15 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 9036 9566
YP_009197148.1 NC_028779_p23 hypothetical protein phrog_6443 unknown function unknown function 1 21446 21742
YP_009197177.1 NC_028779_p52 hypothetical protein phrog_11218 unknown function unknown function 1 35422 35706
YP_009197169.1 NC_028779_p44 hypothetical protein phrog_8273 unknown function unknown function 1 31452 31724
YP_009197185.1 NC_028779_p60 hypothetical protein phrog_2021 unknown function unknown function 1 38217 38591