| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028784 |
Definition |
Mycobacterium phage Tasp14, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51409 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
89 |
%GC |
63.92 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009197619.1 | NC_028784_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31951 | 32121 |
| YP_009197585.1 | NC_028784_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3616 | 4305 |
| YP_009197624.1 | NC_028784_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33185 | 35011 |
| YP_009197639.1 | NC_028784_p60 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40229 | 40363 |
| YP_009197584.1 | NC_028784_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2536 | 3606 |
| YP_009197594.1 | NC_028784_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11835 | 12845 |
| YP_009197613.1 | NC_028784_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28080 | 28271 |
| YP_009197652.1 | NC_028784_p73 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46225 | 46737 |
| YP_009197636.1 | NC_028784_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39729 | 39890 |
| YP_009197599.1 | NC_028784_p20 | head to tail connector | phrog_123 | tail terminator | connector | 1 | 14370 | 14816 |
| YP_009197582.1 | NC_028784_p3 | tail protein | phrog_226 | minor tail protein | tail | 1 | 1101 | 1535 |
| YP_009197651.1 | NC_028784_p72 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 45788 | 46183 |
| YP_009197650.1 | NC_028784_p71 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45477 | 45791 |
| YP_009197666.1 | NC_028784_p87 | hypothetical protein | phrog_3574 | unknown function | unknown function | 1 | 50361 | 50627 |
| YP_009197611.1 | NC_028784_p32 | D-ala-D-ala-carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26179 | 27657 |
| YP_009197612.1 | NC_028784_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27747 | 28070 |
| YP_009197644.1 | NC_028784_p65 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 42919 | 43218 |
| YP_009197622.1 | NC_028784_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32494 | 32850 |
| YP_009197629.1 | NC_028784_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36336 | 37127 |
| YP_009197647.1 | NC_028784_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 44154 | 44447 |
| YP_009197591.1 | NC_028784_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8935 | 10377 |
| YP_009197581.1 | NC_028784_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 770 | 1066 |
| YP_009197635.1 | NC_028784_p56 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39208 | 39750 |
| YP_009197646.1 | NC_028784_p67 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 44011 | 44157 |
| YP_009197659.1 | NC_028784_p80 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48285 | 48437 |
| YP_009197625.1 | NC_028784_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35048 | 35278 |
| YP_009197589.1 | NC_028784_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 6262 | 7230 |
| YP_009197620.1 | NC_028784_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32118 | 32213 |
| YP_009197667.1 | NC_028784_p88 | hypothetical protein | singleton | unknown function | unknown function | -1 | 50652 | 50819 |
| YP_009197663.1 | NC_028784_p84 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 49447 | 49566 |
| YP_009197655.1 | NC_028784_p76 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47467 | 47736 |
| YP_009197638.1 | NC_028784_p59 | hypothetical protein | phrog_13342 | unknown function | unknown function | -1 | 40095 | 40232 |
| YP_009197649.1 | NC_028784_p70 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44660 | 45484 |
| YP_009197630.1 | NC_028784_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 37120 | 37260 |
| YP_009197621.1 | NC_028784_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32210 | 32497 |
| YP_009197618.1 | NC_028784_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31556 | 31951 |
| YP_009197626.1 | NC_028784_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35309 | 35800 |
| YP_009197641.1 | NC_028784_p62 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 41978 | 42472 |
| YP_009197657.1 | NC_028784_p78 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47933 | 48121 |
| YP_009197656.1 | NC_028784_p77 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47733 | 47936 |
| YP_009197614.1 | NC_028784_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28268 | 29101 |
| YP_009197628.1 | NC_028784_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36157 | 36339 |
| YP_009197645.1 | NC_028784_p66 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 43215 | 44024 |
| YP_009197610.1 | NC_028784_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24345 | 26186 |
| YP_009197598.1 | NC_028784_p19 | head to tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13971 | 14366 |
| YP_009197665.1 | NC_028784_p86 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 49921 | 50127 |
| YP_009197588.1 | NC_028784_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4839 | 6272 |
| YP_009197661.1 | NC_028784_p82 | hypothetical protein | phrog_5017 | unknown function | unknown function | -1 | 48867 | 49232 |
| YP_009197604.1 | NC_028784_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19088 | 21145 |
| YP_009197633.1 | NC_028784_p54 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38200 | 38871 |
| YP_009197658.1 | NC_028784_p79 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48121 | 48288 |
| YP_009197605.1 | NC_028784_p26 | minor tail protein | phrog_1543 | minor tail protein | tail | 1 | 21164 | 21346 |
| YP_009197637.1 | NC_028784_p58 | hypothetical protein | phrog_11567 | unknown function | unknown function | -1 | 39890 | 40066 |
| YP_009197642.1 | NC_028784_p63 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 42459 | 42545 |
| YP_009197580.1 | NC_028784_p1 | hypothetical protein | phrog_20581 | unknown function | unknown function | 1 | 534 | 773 |
| YP_009197634.1 | NC_028784_p55 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38868 | 39389 |
| YP_009197590.1 | NC_028784_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7250 | 8938 |
| YP_009197587.1 | NC_028784_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4582 | 4839 |
| YP_009197627.1 | NC_028784_p48 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 35835 | 36164 |
| YP_009197623.1 | NC_028784_p44 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 32850 | 33188 |
| YP_009197583.1 | NC_028784_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1707 | 2126 |
| YP_009197653.1 | NC_028784_p74 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46999 | 47298 |
| YP_009197592.1 | NC_028784_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10374 | 11255 |
| YP_009197660.1 | NC_028784_p81 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48434 | 48610 |
| YP_009197606.1 | NC_028784_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21346 | 23148 |
| YP_009197607.1 | NC_028784_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 23186 | 23632 |
| YP_009197600.1 | NC_028784_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14825 | 15673 |
| YP_009197595.1 | NC_028784_p16 | head to tail connector | phrog_1857 | head-tail connector protein | connector | 1 | 12924 | 13160 |
| YP_009197617.1 | NC_028784_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31287 | 31559 |
| YP_009197608.1 | NC_028784_p29 | minor tail protein | phrog_981 | minor tail protein | tail | 1 | 23629 | 23976 |
| YP_009197601.1 | NC_028784_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15782 | 16581 |
| YP_009197640.1 | NC_028784_p61 | DNA methylase | phrog_67 | DNA methyltransferase | other | -1 | 40389 | 41981 |
| YP_009197668.1 | NC_028784_p89 | hypothetical protein | phrog_15488 | unknown function | unknown function | -1 | 50884 | 51351 |
| YP_009197597.1 | NC_028784_p18 | head to tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13609 | 13971 |
| YP_009197616.1 | NC_028784_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29595 | 31166 |
| YP_009197615.1 | NC_028784_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29221 | 29517 |
| YP_009197632.1 | NC_028784_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 38024 | 38203 |
| YP_009197603.1 | NC_028784_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16593 | 19064 |
| YP_009197664.1 | NC_028784_p85 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 49682 | 49837 |
| YP_009197586.1 | NC_028784_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 4314 | 4574 |
| YP_009197654.1 | NC_028784_p75 | hypothetical protein | phrog_6474 | recombination directionality factor | integration and excision | -1 | 47291 | 47470 |
| YP_009197609.1 | NC_028784_p30 | minor tail protein | phrog_1397 | unknown function | unknown function | 1 | 23973 | 24320 |
| YP_009197596.1 | NC_028784_p17 | head to tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13160 | 13609 |
| YP_009197643.1 | NC_028784_p64 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 42542 | 42922 |
| YP_009197602.1 | NC_028784_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15782 | 16159 |
| YP_009197648.1 | NC_028784_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 44451 | 44633 |
| YP_009197662.1 | NC_028784_p83 | hypothetical protein | phrog_5533 | unknown function | unknown function | -1 | 49232 | 49450 |
| YP_009197593.1 | NC_028784_p14 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11313 | 11825 |
| YP_009197631.1 | NC_028784_p52 | recombination directionality factor | phrog_221 | metallo-phosphoesterase | other | -1 | 37260 | 38027 |