| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028788 |
Definition |
Bacteriophage Diva, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Sitaravirus. |
DB of origin |
REFSEQ |
Length |
37246 |
Host Name |
Paenibacillus larvae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
60 |
%GC |
42.07 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009197988.1 | NC_028788_p43 | RecT-like protein | phrog_2780 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 26813 | 27715 |
| YP_009198000.1 | NC_028788_p55 | hypothetical protein | phrog_5494 | unknown function | unknown function | 1 | 34013 | 34471 |
| YP_009198001.1 | NC_028788_p56 | ArpU-like transcriptional regulator | phrog_248 | transcriptional activator | transcription regulation | 1 | 34522 | 34962 |
| YP_009197958.1 | NC_028788_p13 | hypothetical protein | phrog_7848 | unknown function | unknown function | 1 | 7481 | 7735 |
| YP_009197955.1 | NC_028788_p10 | tail protein | phrog_176 | tail terminator | connector | 1 | 6285 | 6680 |
| YP_009197948.1 | NC_028788_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2084 | 3319 |
| YP_009197991.1 | NC_028788_p46 | primosome component-like protein | phrog_2514 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 28811 | 29641 |
| YP_009197956.1 | NC_028788_p11 | major tail protein | phrog_1407 | major tail protein | tail | 1 | 6682 | 7119 |
| YP_009197986.1 | NC_028788_p41 | ATPase | phrog_1499 | unknown function | unknown function | 1 | 25094 | 26626 |
| YP_009197969.1 | NC_028788_p24 | hypothetical protein | phrog_14782 | unknown function | unknown function | 1 | 15735 | 15845 |
| YP_009197968.1 | NC_028788_p23 | hypothetical protein | phrog_9393 | unknown function | unknown function | 1 | 15262 | 15453 |
| YP_009197950.1 | NC_028788_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4022 | 5152 |
| YP_009197976.1 | NC_028788_p31 | hypothetical protein | phrog_8263 | unknown function | unknown function | -1 | 19703 | 20251 |
| YP_009197993.1 | NC_028788_p48 | hypothetical protein | phrog_6868 | unknown function | unknown function | 1 | 30932 | 31237 |
| YP_009197964.1 | NC_028788_p19 | hypothetical protein | phrog_134 | unknown function | unknown function | 1 | 13824 | 13985 |
| YP_009198005.1 | NC_028788_p60 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 36854 | 37192 |
| YP_009197996.1 | NC_028788_p51 | MazG-like nucleotide pyrophosphohydrolase | phrog_715 | MazG-like pyrophosphatase | other | 1 | 32297 | 32602 |
| YP_009197995.1 | NC_028788_p50 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 31432 | 32136 |
| YP_009198004.1 | NC_028788_p59 | transglycosylase-like protein | phrog_1315 | unknown function | unknown function | 1 | 36591 | 36857 |
| YP_009197998.1 | NC_028788_p53 | hypothetical protein | phrog_6998 | unknown function | unknown function | 1 | 33085 | 33300 |
| YP_009197951.1 | NC_028788_p6 | hypothetical protein | phrog_6793 | unknown function | unknown function | 1 | 5130 | 5303 |
| YP_009197984.1 | NC_028788_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24645 | 24815 |
| YP_009197999.1 | NC_028788_p54 | RuvC-like resolvase | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 33297 | 33854 |
| YP_009197959.1 | NC_028788_p14 | tail tape measure | phrog_58 | tail length tape measure protein | tail | 1 | 7795 | 10431 |
| YP_009197962.1 | NC_028788_p17 | tail protein | phrog_5339 | virion structural protein | head and packaging | 1 | 12406 | 13479 |
| YP_009197992.1 | NC_028788_p47 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 29607 | 30929 |
| YP_009197997.1 | NC_028788_p52 | hypothetical protein | phrog_98 | unknown function | unknown function | 1 | 32709 | 33092 |
| YP_009197946.1 | NC_028788_p1 | terminase small subunit | phrog_361 | terminase small subunit | head and packaging | 1 | 50 | 364 |
| YP_009197972.1 | NC_028788_p27 | hypothetical protein | phrog_17971 | unknown function | unknown function | 1 | 17240 | 17380 |
| YP_009197952.1 | NC_028788_p7 | head-tail connector | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 5296 | 5559 |
| YP_009197970.1 | NC_028788_p25 | peptidase-like protein | phrog_15561 | peptidase | other | 1 | 15842 | 16549 |
| YP_009197961.1 | NC_028788_p16 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 11282 | 12400 |
| YP_009197965.1 | NC_028788_p20 | bacteriocin-like protein | phrog_2429 | involved in bacteriocin production or immunity | moron, auxiliary metabolic gene and host takeover | 1 | 13966 | 14205 |
| YP_009197989.1 | NC_028788_p44 | beta-lactamase-like hydrolase | phrog_392 | metal-dependent hydrolase | other | 1 | 27728 | 28486 |
| YP_009198003.1 | NC_028788_p58 | HicA-like protein | phrog_353 | toxin | moron, auxiliary metabolic gene and host takeover | -1 | 35586 | 35801 |
| YP_009197994.1 | NC_028788_p49 | DNA-cytosine methyltransferase | phrog_363 | DNA methyltransferase | other | 1 | 31248 | 32300 |
| YP_009197949.1 | NC_028788_p4 | Clp protease-like protein | phrog_94 | head maturation protease | head and packaging | 1 | 3309 | 4025 |
| YP_009197973.1 | NC_028788_p28 | transposase | phrog_157 | transposase | integration and excision | -1 | 17439 | 18158 |
| YP_009197960.1 | NC_028788_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 10428 | 11279 |
| YP_009197978.1 | NC_028788_p33 | transposase-like protein | phrog_157 | transposase | integration and excision | -1 | 20945 | 21634 |
| YP_009197963.1 | NC_028788_p18 | hypothetical protein | phrog_6220 | unknown function | unknown function | 1 | 13489 | 13827 |
| YP_009197947.1 | NC_028788_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 345 | 2069 |
| YP_009197983.1 | NC_028788_p38 | DNA binding antirepressor | phrog_373 | anti-repressor | transcription regulation | 1 | 23878 | 24618 |
| YP_009197953.1 | NC_028788_p8 | head-tail adaptor | phrog_25 | head closure Hc1 | connector | 1 | 5556 | 5873 |
| YP_009197990.1 | NC_028788_p45 | hypothetical protein | phrog_7503 | unknown function | unknown function | 1 | 28483 | 28797 |
| YP_009197979.1 | NC_028788_p34 | transposase | phrog_151 | transposase | integration and excision | -1 | 21640 | 21921 |
| YP_009197967.1 | NC_028788_p22 | holin-like protein | phrog_1299 | holin | lysis | 1 | 14886 | 15128 |
| YP_009197954.1 | NC_028788_p9 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 5873 | 6301 |
| YP_009197966.1 | NC_028788_p21 | N-acetylmuramoyl-L-alanine amidase-like protein | phrog_3088 | amidase | lysis | 1 | 14205 | 14876 |
| YP_009197987.1 | NC_028788_p42 | hypothetical protein | phrog_5189 | unknown function | unknown function | 1 | 26613 | 26810 |
| YP_009197981.1 | NC_028788_p36 | DNA binding protein | phrog_925 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 23294 | 23551 |
| YP_009197975.1 | NC_028788_p30 | hypothetical protein | phrog_3374 | unknown function | unknown function | -1 | 19498 | 19701 |
| YP_009197971.1 | NC_028788_p26 | hypothetical protein | phrog_15378 | unknown function | unknown function | 1 | 16585 | 17109 |
| YP_009197982.1 | NC_028788_p37 | hypothetical protein | phrog_13096 | unknown function | unknown function | 1 | 23706 | 23852 |
| YP_009197985.1 | NC_028788_p40 | hypothetical protein | phrog_8288 | unknown function | unknown function | 1 | 24820 | 25110 |
| YP_009198002.1 | NC_028788_p57 | HicB-like protein | phrog_497 | toxin-antitoxin system HicB-like | moron, auxiliary metabolic gene and host takeover | -1 | 35102 | 35524 |
| YP_009197977.1 | NC_028788_p32 | YolD-like protein | phrog_8703 | unknown function | unknown function | 1 | 20493 | 20747 |
| YP_009197974.1 | NC_028788_p29 | transposase | phrog_151 | transposase | integration and excision | -1 | 18329 | 19012 |
| YP_009197980.1 | NC_028788_p35 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 22631 | 23077 |
| YP_009197957.1 | NC_028788_p12 | hypothetical protein | phrog_7902 | unknown function | unknown function | 1 | 7116 | 7454 |