Genomic map of Mycobacterium phage Kimberlium (NC_028792)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028792
Definition
Mycobacterium phage Kimberlium, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
56826
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
105
%GC
61.44
Number of singletons
1
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009198181.1 NC_028792_p77 hypothetical protein phrog_1943 unknown function unknown function 1 47081 47275
YP_009198145.1 NC_028792_p41 hypothetical protein phrog_3693 unknown function unknown function -1 32033 32155
YP_009198133.1 NC_028792_p29 hypothetical protein phrog_932 unknown function unknown function 1 26867 27013
YP_009198122.1 NC_028792_p18 minor tail protein phrog_110 minor tail protein tail 1 15928 17637
YP_009198190.1 NC_028792_p86 hypothetical protein phrog_14412 unknown function unknown function 1 49408 49908
YP_009198159.1 NC_028792_p55 hypothetical protein phrog_1797 unknown function unknown function 1 39048 39626
YP_009198207.1 NC_028792_p103 Ser/Thr kinase phrog_3297 kinase other 1 55448 55918
YP_009198135.1 NC_028792_p31 hypothetical protein phrog_747 unknown function unknown function 1 27224 27457
YP_009198173.1 NC_028792_p69 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 43678 44256
YP_009198160.1 NC_028792_p56 hypothetical protein phrog_8015 unknown function unknown function 1 39644 39925
YP_009198165.1 NC_028792_p61 helix-turn-helix DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41461 41814
YP_009198185.1 NC_028792_p81 hypothetical protein phrog_3647 unknown function unknown function 1 48189 48350
YP_009198106.1 NC_028792_p2 small terminase subunit phrog_4479 terminase small subunit head and packaging 1 445 699
YP_009198175.1 NC_028792_p71 hypothetical protein phrog_2070 unknown function unknown function 1 44613 44798
YP_009198112.1 NC_028792_p8 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 5929 6300
YP_009198129.1 NC_028792_p25 hypothetical protein phrog_2012 minor tail protein tail 1 24752 25390
YP_009198205.1 NC_028792_p101 hypothetical protein phrog_1385 unknown function unknown function 1 53585 53827
YP_009198155.1 NC_028792_p51 hypothetical protein phrog_2025 unknown function unknown function 1 38368 38583
YP_009198140.1 NC_028792_p36 hypothetical protein phrog_2004 unknown function unknown function 1 30288 30521
YP_009198209.1 NC_028792_p105 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 56124 56735
YP_009198171.1 NC_028792_p67 hypothetical protein phrog_780 unknown function unknown function 1 43095 43343
YP_009198166.1 NC_028792_p62 WhiB phrog_472 WhiB transcriptional factor transcription regulation 1 41811 42092
YP_009198176.1 NC_028792_p72 hypothetical protein phrog_1311 unknown function unknown function 1 44776 44925
YP_009198169.1 NC_028792_p65 hypothetical protein phrog_1834 unknown function unknown function 1 42609 42839
YP_009198188.1 NC_028792_p84 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 48880 49251
YP_009198121.1 NC_028792_p17 minor tail protein phrog_106 minor tail protein tail 1 14161 15870
YP_009198146.1 NC_028792_p42 hypothetical protein phrog_2437 unknown function unknown function -1 32155 32322
YP_009198154.1 NC_028792_p50 hypothetical protein phrog_5253 unknown function unknown function 1 38072 38371
YP_009198180.1 NC_028792_p76 hypothetical protein phrog_6275 unknown function unknown function 1 46701 47081
YP_009198161.1 NC_028792_p57 hypothetical protein phrog_1849 unknown function unknown function 1 40001 40282
YP_009198123.1 NC_028792_p19 minor tail protein phrog_732 minor tail protein tail 1 17674 18522
YP_009198168.1 NC_028792_p64 hypothetical protein phrog_2078 unknown function unknown function 1 42451 42609
YP_009198197.1 NC_028792_p93 hypothetical protein phrog_2278 unknown function unknown function 1 51162 51458
YP_009198150.1 NC_028792_p46 HTH DNA binding protein phrog_2838 transcriptional repressor transcription regulation -1 35036 35638
YP_009198156.1 NC_028792_p52 hypothetical protein phrog_5563 unknown function unknown function 1 38580 38672
YP_009198186.1 NC_028792_p82 hypothetical protein phrog_3447 unknown function unknown function 1 48347 48562
YP_009198142.1 NC_028792_p38 hypothetical protein phrog_1791 unknown function unknown function 1 31345 31635
YP_009198137.1 NC_028792_p33 lysin B phrog_102 endolysin lysis 1 28888 29646
YP_009198195.1 NC_028792_p91 hypothetical protein phrog_1091 unknown function unknown function 1 50788 50967
YP_009198108.1 NC_028792_p4 portal protein phrog_104 portal protein head and packaging 1 2200 3621
YP_009198162.1 NC_028792_p58 hypothetical protein phrog_658 unknown function unknown function 1 40279 40626
YP_009198130.1 NC_028792_p26 minor tail protein phrog_754 minor tail protein tail 1 25387 26211
YP_009198136.1 NC_028792_p32 lysin A phrog_700 endolysin lysis 1 27454 28644
YP_009198174.1 NC_028792_p70 HNH endonuclease phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44253 44594
YP_009198187.1 NC_028792_p83 hypothetical protein phrog_647 unknown function unknown function 1 48559 48834
YP_009198196.1 NC_028792_p92 hypothetical protein phrog_1545 unknown function unknown function 1 50972 51109
YP_009198192.1 NC_028792_p88 hypothetical protein phrog_2939 unknown function unknown function 1 50125 50337
YP_009198141.1 NC_028792_p37 Dna-Q like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 30508 31329
YP_009198149.1 NC_028792_p45 hypothetical protein phrog_1948 unknown function unknown function -1 34318 34803
YP_009198170.1 NC_028792_p66 hypothetical protein phrog_6736 unknown function unknown function 1 42827 43102
YP_009198143.1 NC_028792_p39 hypothetical protein phrog_1839 unknown function unknown function 1 31628 31720
YP_009198110.1 NC_028792_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4409 4945
YP_009198193.1 NC_028792_p89 hypothetical protein phrog_1901 unknown function unknown function 1 50334 50528
YP_009198124.1 NC_028792_p20 minor tail protein phrog_346 minor tail protein tail 1 18519 21056
YP_009198128.1 NC_028792_p24 hypothetical protein phrog_2005 minor tail protein tail 1 24484 24738
YP_009198163.1 NC_028792_p59 WhiB phrog_1333 unknown function unknown function 1 40626 41120
YP_009198148.1 NC_028792_p44 integrase phrog_1 integrase integration and excision 1 32953 34242
YP_009198201.1 NC_028792_p97 hypothetical protein phrog_1869 unknown function unknown function 1 52674 52838
YP_009198203.1 NC_028792_p99 hypothetical protein phrog_3813 unknown function unknown function 1 52999 53190
YP_009198107.1 NC_028792_p3 large terminase subunit phrog_2 terminase large subunit head and packaging 1 671 2158
YP_009198153.1 NC_028792_p49 hypothetical protein singleton unknown function unknown function 1 36981 38075
YP_009198200.1 NC_028792_p96 AlpA-like protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 52453 52677
YP_009198144.1 NC_028792_p40 hypothetical protein phrog_7480 unknown function unknown function -1 31830 32036
YP_009198126.1 NC_028792_p22 minor tail protein phrog_2106 minor tail protein tail 1 22936 24102
YP_009198158.1 NC_028792_p54 hypothetical protein phrog_1816 unknown function unknown function 1 38863 39051
YP_009198132.1 NC_028792_p28 hypothetical protein phrog_411 unknown function unknown function 1 26564 26860
YP_009198127.1 NC_028792_p23 hypothetical protein phrog_240 head protein head and packaging 1 24120 24461
YP_009198183.1 NC_028792_p79 hypothetical protein phrog_1546 unknown function unknown function 1 47400 48023
YP_009198120.1 NC_028792_p16 transposase phrog_506 transposase integration and excision -1 12831 14051
YP_009198131.1 NC_028792_p27 HTH DNA binding protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 26217 26414
YP_009198111.1 NC_028792_p7 major capsid protein phrog_10 major head protein head and packaging 1 5008 5916
YP_009198189.1 NC_028792_p85 hypothetical protein phrog_7842 unknown function unknown function 1 49238 49411
YP_009198172.1 NC_028792_p68 hypothetical protein phrog_2060 DNA methyltransferase other 1 43340 43681
YP_009198194.1 NC_028792_p90 hypothetical protein phrog_6625 unknown function unknown function 1 50501 50791
YP_009198138.1 NC_028792_p34 holin phrog_443 holin lysis 1 29660 29893
YP_009198204.1 NC_028792_p100 hypothetical protein phrog_1186 unknown function unknown function 1 53187 53588
YP_009198177.1 NC_028792_p73 GIY-YIG endonuclease phrog_3312 endonuclease DNA, RNA and nucleotide metabolism 1 44925 45482
YP_009198157.1 NC_028792_p53 Xis phrog_66 excisionase and transcriptional regulator integration and excision 1 38669 38866
YP_009198199.1 NC_028792_p95 hypothetical protein phrog_1467 unknown function unknown function 1 51699 52343
YP_009198184.1 NC_028792_p80 hypothetical protein phrog_15751 unknown function unknown function 1 48016 48192
YP_009198182.1 NC_028792_p78 hypothetical protein phrog_9840 unknown function unknown function 1 47272 47403
YP_009198178.1 NC_028792_p74 hypothetical protein phrog_3171 replication initiation protein DNA, RNA and nucleotide metabolism 1 45482 46441
YP_009198202.1 NC_028792_p98 hypothetical protein phrog_1694 unknown function unknown function 1 52844 53002
YP_009198147.1 NC_028792_p43 hypothetical protein phrog_5648 unknown function unknown function -1 32322 32558
YP_009198198.1 NC_028792_p94 hypothetical protein phrog_2247 unknown function unknown function 1 51451 51702
YP_009198125.1 NC_028792_p21 D-alanyl D-alanine carboxypeptidase phrog_382 minor tail protein with lysin activity tail 1 21053 22939
YP_009198179.1 NC_028792_p75 hypothetical protein phrog_2080 unknown function unknown function 1 46441 46704
YP_009198119.1 NC_028792_p15 tapemeasure phrog_1942 tail length tape measure protein tail 1 9345 12830
YP_009198151.1 NC_028792_p47 CRO protein phrog_6463 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 35734 36057
YP_009198117.1 NC_028792_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8298 9327
YP_009198113.1 NC_028792_p9 head-to-tail connector phrog_763 head-tail adaptor connector 1 6297 6626
YP_009198152.1 NC_028792_p48 antirepressor phrog_130 anti-repressor Ant transcription regulation 1 36118 36984
YP_009198109.1 NC_028792_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3605 4330
YP_009198208.1 NC_028792_p104 hypothetical protein phrog_1693 unknown function unknown function 1 55915 56127
YP_009198116.1 NC_028792_p12 major tail subunit phrog_476 major tail protein tail 1 7463 8272
YP_009198115.1 NC_028792_p11 head-to-tail connector phrog_813 head-tail adaptor connector 1 6949 7353
YP_009198118.1 NC_028792_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8298 8942
YP_009198134.1 NC_028792_p30 hypothetical protein phrog_1172 unknown function unknown function 1 27010 27150
YP_009198167.1 NC_028792_p63 helix-turn-helix DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 42089 42454
YP_009198139.1 NC_028792_p35 hypothetical protein phrog_404 minor tail protein tail 1 29890 30264
YP_009198105.1 NC_028792_p1 HNH endonuclease phrog_338 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41 373
YP_009198191.1 NC_028792_p87 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision 1 49905 50072
YP_009198114.1 NC_028792_p10 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6633 6959
YP_009198206.1 NC_028792_p102 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 53824 55443
YP_009198164.1 NC_028792_p60 helix-turn-helix DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 41117 41464