| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028792 |
Definition |
Mycobacterium phage Kimberlium, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
56826 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
61.44 |
Number of singletons |
1 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009198181.1 | NC_028792_p77 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 47081 | 47275 |
| YP_009198145.1 | NC_028792_p41 | hypothetical protein | phrog_3693 | unknown function | unknown function | -1 | 32033 | 32155 |
| YP_009198133.1 | NC_028792_p29 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 26867 | 27013 |
| YP_009198122.1 | NC_028792_p18 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 15928 | 17637 |
| YP_009198190.1 | NC_028792_p86 | hypothetical protein | phrog_14412 | unknown function | unknown function | 1 | 49408 | 49908 |
| YP_009198159.1 | NC_028792_p55 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 39048 | 39626 |
| YP_009198207.1 | NC_028792_p103 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 55448 | 55918 |
| YP_009198135.1 | NC_028792_p31 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 27224 | 27457 |
| YP_009198173.1 | NC_028792_p69 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43678 | 44256 |
| YP_009198160.1 | NC_028792_p56 | hypothetical protein | phrog_8015 | unknown function | unknown function | 1 | 39644 | 39925 |
| YP_009198165.1 | NC_028792_p61 | helix-turn-helix DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41461 | 41814 |
| YP_009198185.1 | NC_028792_p81 | hypothetical protein | phrog_3647 | unknown function | unknown function | 1 | 48189 | 48350 |
| YP_009198106.1 | NC_028792_p2 | small terminase subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| YP_009198175.1 | NC_028792_p71 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44613 | 44798 |
| YP_009198112.1 | NC_028792_p8 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5929 | 6300 |
| YP_009198129.1 | NC_028792_p25 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 24752 | 25390 |
| YP_009198205.1 | NC_028792_p101 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 53585 | 53827 |
| YP_009198155.1 | NC_028792_p51 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 38368 | 38583 |
| YP_009198140.1 | NC_028792_p36 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 30288 | 30521 |
| YP_009198209.1 | NC_028792_p105 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56124 | 56735 |
| YP_009198171.1 | NC_028792_p67 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 43095 | 43343 |
| YP_009198166.1 | NC_028792_p62 | WhiB | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 41811 | 42092 |
| YP_009198176.1 | NC_028792_p72 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44776 | 44925 |
| YP_009198169.1 | NC_028792_p65 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 42609 | 42839 |
| YP_009198188.1 | NC_028792_p84 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 48880 | 49251 |
| YP_009198121.1 | NC_028792_p17 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 14161 | 15870 |
| YP_009198146.1 | NC_028792_p42 | hypothetical protein | phrog_2437 | unknown function | unknown function | -1 | 32155 | 32322 |
| YP_009198154.1 | NC_028792_p50 | hypothetical protein | phrog_5253 | unknown function | unknown function | 1 | 38072 | 38371 |
| YP_009198180.1 | NC_028792_p76 | hypothetical protein | phrog_6275 | unknown function | unknown function | 1 | 46701 | 47081 |
| YP_009198161.1 | NC_028792_p57 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 40001 | 40282 |
| YP_009198123.1 | NC_028792_p19 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 17674 | 18522 |
| YP_009198168.1 | NC_028792_p64 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 42451 | 42609 |
| YP_009198197.1 | NC_028792_p93 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51162 | 51458 |
| YP_009198150.1 | NC_028792_p46 | HTH DNA binding protein | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 35036 | 35638 |
| YP_009198156.1 | NC_028792_p52 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 38580 | 38672 |
| YP_009198186.1 | NC_028792_p82 | hypothetical protein | phrog_3447 | unknown function | unknown function | 1 | 48347 | 48562 |
| YP_009198142.1 | NC_028792_p38 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 31345 | 31635 |
| YP_009198137.1 | NC_028792_p33 | lysin B | phrog_102 | endolysin | lysis | 1 | 28888 | 29646 |
| YP_009198195.1 | NC_028792_p91 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 50788 | 50967 |
| YP_009198108.1 | NC_028792_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2200 | 3621 |
| YP_009198162.1 | NC_028792_p58 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 40279 | 40626 |
| YP_009198130.1 | NC_028792_p26 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 25387 | 26211 |
| YP_009198136.1 | NC_028792_p32 | lysin A | phrog_700 | endolysin | lysis | 1 | 27454 | 28644 |
| YP_009198174.1 | NC_028792_p70 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44253 | 44594 |
| YP_009198187.1 | NC_028792_p83 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 48559 | 48834 |
| YP_009198196.1 | NC_028792_p92 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 50972 | 51109 |
| YP_009198192.1 | NC_028792_p88 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 50125 | 50337 |
| YP_009198141.1 | NC_028792_p37 | Dna-Q like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 30508 | 31329 |
| YP_009198149.1 | NC_028792_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 34318 | 34803 |
| YP_009198170.1 | NC_028792_p66 | hypothetical protein | phrog_6736 | unknown function | unknown function | 1 | 42827 | 43102 |
| YP_009198143.1 | NC_028792_p39 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 31628 | 31720 |
| YP_009198110.1 | NC_028792_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4409 | 4945 |
| YP_009198193.1 | NC_028792_p89 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50334 | 50528 |
| YP_009198124.1 | NC_028792_p20 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 18519 | 21056 |
| YP_009198128.1 | NC_028792_p24 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 24484 | 24738 |
| YP_009198163.1 | NC_028792_p59 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 40626 | 41120 |
| YP_009198148.1 | NC_028792_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 32953 | 34242 |
| YP_009198201.1 | NC_028792_p97 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 52674 | 52838 |
| YP_009198203.1 | NC_028792_p99 | hypothetical protein | phrog_3813 | unknown function | unknown function | 1 | 52999 | 53190 |
| YP_009198107.1 | NC_028792_p3 | large terminase subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| YP_009198153.1 | NC_028792_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36981 | 38075 |
| YP_009198200.1 | NC_028792_p96 | AlpA-like protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 52453 | 52677 |
| YP_009198144.1 | NC_028792_p40 | hypothetical protein | phrog_7480 | unknown function | unknown function | -1 | 31830 | 32036 |
| YP_009198126.1 | NC_028792_p22 | minor tail protein | phrog_2106 | minor tail protein | tail | 1 | 22936 | 24102 |
| YP_009198158.1 | NC_028792_p54 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 38863 | 39051 |
| YP_009198132.1 | NC_028792_p28 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 26564 | 26860 |
| YP_009198127.1 | NC_028792_p23 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 24120 | 24461 |
| YP_009198183.1 | NC_028792_p79 | hypothetical protein | phrog_1546 | unknown function | unknown function | 1 | 47400 | 48023 |
| YP_009198120.1 | NC_028792_p16 | transposase | phrog_506 | transposase | integration and excision | -1 | 12831 | 14051 |
| YP_009198131.1 | NC_028792_p27 | HTH DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 26217 | 26414 |
| YP_009198111.1 | NC_028792_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5008 | 5916 |
| YP_009198189.1 | NC_028792_p85 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 49238 | 49411 |
| YP_009198172.1 | NC_028792_p68 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 43340 | 43681 |
| YP_009198194.1 | NC_028792_p90 | hypothetical protein | phrog_6625 | unknown function | unknown function | 1 | 50501 | 50791 |
| YP_009198138.1 | NC_028792_p34 | holin | phrog_443 | holin | lysis | 1 | 29660 | 29893 |
| YP_009198204.1 | NC_028792_p100 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 53187 | 53588 |
| YP_009198177.1 | NC_028792_p73 | GIY-YIG endonuclease | phrog_3312 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44925 | 45482 |
| YP_009198157.1 | NC_028792_p53 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 38669 | 38866 |
| YP_009198199.1 | NC_028792_p95 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 51699 | 52343 |
| YP_009198184.1 | NC_028792_p80 | hypothetical protein | phrog_15751 | unknown function | unknown function | 1 | 48016 | 48192 |
| YP_009198182.1 | NC_028792_p78 | hypothetical protein | phrog_9840 | unknown function | unknown function | 1 | 47272 | 47403 |
| YP_009198178.1 | NC_028792_p74 | hypothetical protein | phrog_3171 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 45482 | 46441 |
| YP_009198202.1 | NC_028792_p98 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 52844 | 53002 |
| YP_009198147.1 | NC_028792_p43 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 32322 | 32558 |
| YP_009198198.1 | NC_028792_p94 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 51451 | 51702 |
| YP_009198125.1 | NC_028792_p21 | D-alanyl D-alanine carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 21053 | 22939 |
| YP_009198179.1 | NC_028792_p75 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 46441 | 46704 |
| YP_009198119.1 | NC_028792_p15 | tapemeasure | phrog_1942 | tail length tape measure protein | tail | 1 | 9345 | 12830 |
| YP_009198151.1 | NC_028792_p47 | CRO protein | phrog_6463 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 35734 | 36057 |
| YP_009198117.1 | NC_028792_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8298 | 9327 |
| YP_009198113.1 | NC_028792_p9 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6297 | 6626 |
| YP_009198152.1 | NC_028792_p48 | antirepressor | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 36118 | 36984 |
| YP_009198109.1 | NC_028792_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3605 | 4330 |
| YP_009198208.1 | NC_028792_p104 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 55915 | 56127 |
| YP_009198116.1 | NC_028792_p12 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7463 | 8272 |
| YP_009198115.1 | NC_028792_p11 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 6949 | 7353 |
| YP_009198118.1 | NC_028792_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8298 | 8942 |
| YP_009198134.1 | NC_028792_p30 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 27010 | 27150 |
| YP_009198167.1 | NC_028792_p63 | helix-turn-helix DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 42089 | 42454 |
| YP_009198139.1 | NC_028792_p35 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 29890 | 30264 |
| YP_009198105.1 | NC_028792_p1 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41 | 373 |
| YP_009198191.1 | NC_028792_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | 1 | 49905 | 50072 |
| YP_009198114.1 | NC_028792_p10 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6633 | 6959 |
| YP_009198206.1 | NC_028792_p102 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 53824 | 55443 |
| YP_009198164.1 | NC_028792_p60 | helix-turn-helix DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 41117 | 41464 |