| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028794 |
Definition |
Mycobacterium phage Piro94, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52647 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
94 |
%GC |
63.41 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009198247.1 | NC_028794_p33 | integrase | phrog_1 | integrase | integration and excision | -1 | 25590 | 26723 |
| YP_009198268.1 | NC_028794_p54 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 37153 | 37305 |
| YP_009198266.1 | NC_028794_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 36295 | 36477 |
| YP_009198304.1 | NC_028794_p90 | hypothetical protein | phrog_11479 | unknown function | unknown function | -1 | 49706 | 50035 |
| YP_009198275.1 | NC_028794_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39471 | 39944 |
| YP_009198305.1 | NC_028794_p91 | hypothetical protein | phrog_3207 | unknown function | unknown function | -1 | 50037 | 50324 |
| YP_009198254.1 | NC_028794_p40 | hypothetical protein | phrog_3283 | unknown function | unknown function | -1 | 29187 | 29411 |
| YP_009198253.1 | NC_028794_p39 | hypothetical protein | phrog_12687 | unknown function | unknown function | -1 | 28999 | 29190 |
| YP_009198234.1 | NC_028794_p20 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 14448 | 14816 |
| YP_009198301.1 | NC_028794_p87 | hypothetical protein | phrog_12399 | unknown function | unknown function | -1 | 49214 | 49327 |
| YP_009198219.1 | NC_028794_p5 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 2963 | 3433 |
| YP_009198261.1 | NC_028794_p47 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 32528 | 32731 |
| YP_009198257.1 | NC_028794_p43 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29935 | 31722 |
| YP_009198218.1 | NC_028794_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2628 | 2924 |
| YP_009198256.1 | NC_028794_p42 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 29683 | 29904 |
| YP_009198291.1 | NC_028794_p77 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 46189 | 46509 |
| YP_009198278.1 | NC_028794_p64 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40856 | 41086 |
| YP_009198263.1 | NC_028794_p49 | DNA binding protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 33535 | 34062 |
| YP_009198260.1 | NC_028794_p46 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 32109 | 32531 |
| YP_009198282.1 | NC_028794_p68 | hypothetical protein | phrog_2731 | unknown function | unknown function | -1 | 42658 | 42783 |
| YP_009198262.1 | NC_028794_p48 | ThyX-like protein | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 32733 | 33461 |
| YP_009198226.1 | NC_028794_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7941 | 9728 |
| YP_009198242.1 | NC_028794_p28 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 20672 | 22444 |
| YP_009198227.1 | NC_028794_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9725 | 11185 |
| YP_009198276.1 | NC_028794_p62 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39910 | 40026 |
| YP_009198295.1 | NC_028794_p81 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47094 | 47405 |
| YP_009198289.1 | NC_028794_p75 | hypothetical protein | phrog_1173 | unknown function | unknown function | -1 | 45623 | 45778 |
| YP_009198292.1 | NC_028794_p78 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 46506 | 46739 |
| YP_009198271.1 | NC_028794_p57 | hypothetical protein | phrog_2264 | unknown function | unknown function | -1 | 38392 | 38469 |
| YP_009198281.1 | NC_028794_p67 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41842 | 42648 |
| YP_009198274.1 | NC_028794_p60 | hypothetical protein | phrog_1370 | unknown function | unknown function | -1 | 39311 | 39445 |
| YP_009198308.1 | NC_028794_p94 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51169 | 51462 |
| YP_009198259.1 | NC_028794_p45 | hypothetical protein | phrog_3812 | unknown function | unknown function | -1 | 31924 | 32109 |
| YP_009198307.1 | NC_028794_p93 | hypothetical protein | phrog_1445 | unknown function | unknown function | -1 | 51056 | 51139 |
| YP_009198245.1 | NC_028794_p31 | minor tail subunit | phrog_737 | minor tail protein | tail | 1 | 23234 | 25318 |
| YP_009198233.1 | NC_028794_p19 | head-to-tail connector protein | phrog_830 | head-tail connector protein | connector | 1 | 14254 | 14448 |
| YP_009198222.1 | NC_028794_p8 | hypothetical protein | phrog_1087 | unknown function | unknown function | 1 | 5048 | 5206 |
| YP_009198244.1 | NC_028794_p30 | minor tail subunit | phrog_404 | minor tail protein | tail | 1 | 22904 | 23233 |
| YP_009198241.1 | NC_028794_p27 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 19659 | 20675 |
| YP_009198285.1 | NC_028794_p71 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43239 | 43466 |
| YP_009198216.1 | NC_028794_p2 | hypothetical protein | phrog_5234 | unknown function | unknown function | 1 | 1313 | 2317 |
| YP_009198238.1 | NC_028794_p24 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16312 | 17141 |
| YP_009198283.1 | NC_028794_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42780 | 43019 |
| YP_009198265.1 | NC_028794_p51 | hypothetical protein | phrog_2046 | unknown function | unknown function | -1 | 36095 | 36298 |
| YP_009198298.1 | NC_028794_p84 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48300 | 48506 |
| YP_009198223.1 | NC_028794_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 5206 | 6510 |
| YP_009198240.1 | NC_028794_p26 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17131 | 19638 |
| YP_009198267.1 | NC_028794_p53 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36461 | 37156 |
| YP_009198249.1 | NC_028794_p35 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 27692 | 28087 |
| YP_009198230.1 | NC_028794_p16 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12671 | 13627 |
| YP_009198258.1 | NC_028794_p44 | hypothetical protein | phrog_4326 | unknown function | unknown function | -1 | 31730 | 31924 |
| YP_009198231.1 | NC_028794_p17 | head-to-tail connector protein | phrog_748 | head-tail connector protein | connector | 1 | 13697 | 13876 |
| YP_009198224.1 | NC_028794_p10 | holin | phrog_526 | holin | lysis | 1 | 6507 | 6944 |
| YP_009198225.1 | NC_028794_p11 | lysin B | phrog_102 | endolysin | lysis | 1 | 6941 | 7918 |
| YP_009198237.1 | NC_028794_p23 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 15608 | 16198 |
| YP_009198294.1 | NC_028794_p80 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46963 | 47094 |
| YP_009198264.1 | NC_028794_p50 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 34059 | 36095 |
| YP_009198217.1 | NC_028794_p3 | hypothetical protein | phrog_3585 | immunity protein | other | 1 | 2317 | 2631 |
| YP_009198243.1 | NC_028794_p29 | minor tail subunit | phrog_352 | minor tail protein | tail | 1 | 22461 | 22907 |
| YP_009198215.1 | NC_028794_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 643 | 1380 |
| YP_009198220.1 | NC_028794_p6 | hypothetical protein | phrog_1260 | minor tail protein | tail | 1 | 3519 | 4484 |
| YP_009198246.1 | NC_028794_p32 | hypothetical protein | phrog_19086 | unknown function | unknown function | 1 | 25395 | 25598 |
| YP_009198299.1 | NC_028794_p85 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 48571 | 48867 |
| YP_009198273.1 | NC_028794_p59 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38929 | 39333 |
| YP_009198297.1 | NC_028794_p83 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48160 | 48303 |
| YP_009198303.1 | NC_028794_p89 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49491 | 49697 |
| YP_009198255.1 | NC_028794_p41 | hypothetical protein | phrog_3771 | unknown function | unknown function | -1 | 29399 | 29683 |
| YP_009198228.1 | NC_028794_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11215 | 12066 |
| YP_009198288.1 | NC_028794_p74 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44806 | 45423 |
| YP_009198239.1 | NC_028794_p25 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16312 | 16716 |
| YP_009198232.1 | NC_028794_p18 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13880 | 14257 |
| YP_009198252.1 | NC_028794_p38 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28736 | 28999 |
| YP_009198221.1 | NC_028794_p7 | hypothetical protein | phrog_19718 | unknown function | unknown function | 1 | 4592 | 4900 |
| YP_009198287.1 | NC_028794_p73 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44326 | 44742 |
| YP_009198270.1 | NC_028794_p56 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 38075 | 38395 |
| YP_009198229.1 | NC_028794_p15 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12117 | 12641 |
| YP_009198277.1 | NC_028794_p63 | hydrolase | phrog_789 | esterase/lipase | other | -1 | 40023 | 40859 |
| YP_009198300.1 | NC_028794_p86 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48864 | 49217 |
| YP_009198235.1 | NC_028794_p21 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14816 | 15151 |
| YP_009198280.1 | NC_028794_p66 | hypothetical protein | phrog_5101 | unknown function | unknown function | -1 | 41521 | 41808 |
| YP_009198236.1 | NC_028794_p22 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 15161 | 15589 |
| YP_009198250.1 | NC_028794_p36 | Xis | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 28165 | 28335 |
| YP_009198279.1 | NC_028794_p65 | HTH DNA binding protein | phrog_9069 | unknown function | unknown function | -1 | 41222 | 41527 |
| YP_009198248.1 | NC_028794_p34 | hypothetical protein | phrog_733 | excisionase | integration and excision | 1 | 27208 | 27645 |
| YP_009198293.1 | NC_028794_p79 | hypothetical protein | phrog_3351 | unknown function | unknown function | -1 | 46736 | 46963 |
| YP_009198302.1 | NC_028794_p88 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49327 | 49494 |
| YP_009198306.1 | NC_028794_p92 | hypothetical protein | phrog_2554 | unknown function | unknown function | -1 | 50340 | 51056 |
| YP_009198269.1 | NC_028794_p55 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37308 | 38078 |
| YP_009198290.1 | NC_028794_p76 | hypothetical protein | phrog_4569 | unknown function | unknown function | -1 | 45917 | 46189 |
| YP_009198284.1 | NC_028794_p70 | hypothetical protein | phrog_666 | unknown function | unknown function | -1 | 43048 | 43242 |
| YP_009198251.1 | NC_028794_p37 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 28335 | 28739 |
| YP_009198286.1 | NC_028794_p72 | RecB-like recombinase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43514 | 44329 |
| YP_009198272.1 | NC_028794_p58 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38469 | 39101 |
| YP_009198296.1 | NC_028794_p82 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 47402 | 48160 |