Genomic map of Vibrio phage phi 1 (NC_028799)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028799
Definition
Vibrio phage phi 1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae.
DB of origin
REFSEQ
Length
66708
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
110
%GC
34.5
Number of singletons
15
Number of paralogs
6

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009198542.1 NC_028799_p24 hypothetical protein phrog_30259 unknown function unknown function 1 8382 8585
YP_009198563.1 NC_028799_p45 hypothetical protein phrog_21935 unknown function unknown function 1 15914 16054
YP_009198625.1 NC_028799_p107 hypothetical protein phrog_10915 unknown function unknown function 1 64996 65208
YP_009198521.1 NC_028799_p3 hypothetical protein singleton unknown function unknown function 1 598 990
YP_009198541.1 NC_028799_p23 hypothetical protein phrog_20578 unknown function unknown function 1 8180 8368
YP_009198539.1 NC_028799_p21 hypothetical protein singleton unknown function unknown function 1 7755 7937
YP_009198606.1 NC_028799_p88 terminase large subunit phrog_38 terminase large subunit head and packaging -1 59671 61269
YP_009198614.1 NC_028799_p96 hypothetical protein singleton unknown function unknown function 1 62779 62895
YP_009198582.1 NC_028799_p64 hypothetical protein phrog_1965 unknown function unknown function 1 28811 29419
YP_009198607.1 NC_028799_p89 hypothetical protein phrog_2109 unknown function unknown function -1 61262 61939
YP_009198580.1 NC_028799_p62 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 27085 27618
YP_009198550.1 NC_028799_p32 hypothetical protein phrog_14729 unknown function unknown function 1 10411 10725
YP_009198595.1 NC_028799_p77 hypothetical protein phrog_2220 unknown function unknown function -1 47600 49804
YP_009198589.1 NC_028799_p71 crossover junction endodeoxyribonuclease RusA phrog_21721 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 34920 35717
YP_009198605.1 NC_028799_p87 hypothetical protein phrog_2125 virion structural protein head and packaging -1 58977 59663
YP_009198623.1 NC_028799_p105 hypothetical protein phrog_10915 unknown function unknown function 1 64596 64820
YP_009198529.1 NC_028799_p11 hypothetical protein phrog_18082 unknown function unknown function 1 3100 3333
YP_009198525.1 NC_028799_p7 hypothetical protein singleton unknown function unknown function 1 1900 2121
YP_009198583.1 NC_028799_p65 phosphoribosyl-ATP diphosphatase phrog_671 nucleotide pyrophosphohydrolase other 1 29469 29918
YP_009198601.1 NC_028799_p83 portal protein phrog_1216 portal protein head and packaging -1 53682 55799
YP_009198551.1 NC_028799_p33 PF10947 family protein phrog_18330 unknown function unknown function 1 10735 11154
YP_009198611.1 NC_028799_p93 hypothetical protein phrog_11073 unknown function unknown function 1 62421 62564
YP_009198620.1 NC_028799_p102 hypothetical protein phrog_28847 unknown function unknown function 1 63985 64116
YP_009198617.1 NC_028799_p99 hypothetical protein phrog_37582 unknown function unknown function 1 63453 63611
YP_009198587.1 NC_028799_p69 AAA domain protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 33399 34136
YP_009198599.1 NC_028799_p81 hypothetical protein phrog_2120 tail length tape measure protein tail -1 52273 53367
YP_009198556.1 NC_028799_p38 hypothetical protein singleton unknown function unknown function 1 12688 12810
YP_009198532.1 NC_028799_p14 hypothetical protein phrog_17814 unknown function unknown function 1 3902 4141
YP_009198615.1 NC_028799_p97 hypothetical protein phrog_21733 unknown function unknown function 1 63083 63274
YP_009198590.1 NC_028799_p72 hypothetical protein phrog_32596 unknown function unknown function 1 35717 35914
YP_009198579.1 NC_028799_p61 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 26109 26663
YP_009198596.1 NC_028799_p78 hypothetical protein phrog_2050 virion structural protein head and packaging -1 49827 50303
YP_009198562.1 NC_028799_p44 hypothetical protein phrog_18142 unknown function unknown function 1 15125 15601
YP_009198558.1 NC_028799_p40 hypothetical protein phrog_21600 unknown function unknown function 1 13112 13327
YP_009198547.1 NC_028799_p29 hypothetical protein phrog_18917 unknown function unknown function 1 9751 10047
YP_009198603.1 NC_028799_p85 hypothetical protein phrog_35338 unknown function unknown function -1 56226 57311
YP_009198577.1 NC_028799_p59 hypothetical protein phrog_16775 unknown function unknown function 1 23860 24309
YP_009198602.1 NC_028799_p84 hypothetical protein phrog_18138 unknown function unknown function 1 55869 56156
YP_009198598.1 NC_028799_p80 major capsid protein phrog_1357 major head protein head and packaging -1 50947 52260
YP_009198622.1 NC_028799_p104 hypothetical protein phrog_37787 unknown function unknown function 1 64459 64599
YP_009198570.1 NC_028799_p52 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19129 19728
YP_009198568.1 NC_028799_p50 hypothetical protein phrog_6596 unknown function unknown function 1 17744 18199
YP_009198621.1 NC_028799_p103 hypothetical protein phrog_37863 unknown function unknown function 1 64332 64472
YP_009198586.1 NC_028799_p68 hypothetical protein phrog_14094 unknown function unknown function 1 33108 33383
YP_009198520.1 NC_028799_p2 hypothetical protein phrog_21645 unknown function unknown function 1 389 601
YP_009198610.1 NC_028799_p92 hypothetical protein phrog_11073 unknown function unknown function 1 62297 62434
YP_009198571.1 NC_028799_p53 hypothetical protein phrog_1297 ATPase other 1 19959 20843
YP_009198591.1 NC_028799_p73 hypothetical protein phrog_38220 unknown function unknown function 1 35945 36148
YP_009198626.1 NC_028799_p108 hypothetical protein singleton unknown function unknown function 1 65199 65384
YP_009198624.1 NC_028799_p106 hypothetical protein phrog_10915 unknown function unknown function 1 64811 65005
YP_009198557.1 NC_028799_p39 hypothetical protein phrog_9685 unknown function unknown function 1 12905 13105
YP_009198523.1 NC_028799_p5 hypothetical protein singleton unknown function unknown function 1 1373 1624
YP_009198552.1 NC_028799_p34 lipoprotein phrog_21339 lipoprotein other 1 11151 11453
YP_009198538.1 NC_028799_p20 DNA-directed RNA polymerase RNAP2 phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 6918 7703
YP_009198569.1 NC_028799_p51 hypothetical protein phrog_21479 unknown function unknown function 1 18827 19027
YP_009198574.1 NC_028799_p56 hypothetical protein singleton unknown function unknown function 1 22344 22535
YP_009198604.1 NC_028799_p86 hypothetical protein singleton unknown function unknown function -1 57313 58980
YP_009198544.1 NC_028799_p26 hypothetical protein phrog_25910 unknown function unknown function 1 8727 8972
YP_009198578.1 NC_028799_p60 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 24424 25992
YP_009198522.1 NC_028799_p4 hypothetical protein phrog_33864 unknown function unknown function 1 1071 1235
YP_009198548.1 NC_028799_p30 hypothetical protein phrog_29791 unknown function unknown function 1 10049 10246
YP_009198628.1 NC_028799_p110 hypothetical protein phrog_21584 unknown function unknown function -1 65896 66393
YP_009198618.1 NC_028799_p100 hypothetical protein phrog_29404 unknown function unknown function 1 63694 63870
YP_009198616.1 NC_028799_p98 hypothetical protein phrog_21771 unknown function unknown function 1 63261 63386
YP_009198560.1 NC_028799_p42 hypothetical protein phrog_8697 unknown function unknown function 1 14631 14792
YP_009198619.1 NC_028799_p101 hypothetical protein phrog_25913 unknown function unknown function 1 63867 63998
YP_009198593.1 NC_028799_p75 hypothetical protein phrog_17660 unknown function unknown function -1 45912 47180
YP_009198559.1 NC_028799_p41 hypothetical protein phrog_11852 unknown function unknown function 1 13634 13960
YP_009198597.1 NC_028799_p79 hypothetical protein phrog_2130 unknown function unknown function -1 50306 50890
YP_009198573.1 NC_028799_p55 hypothetical protein singleton unknown function unknown function 1 22178 22372
YP_009198530.1 NC_028799_p12 hypothetical protein phrog_21216 unknown function unknown function 1 3389 3655
YP_009198561.1 NC_028799_p43 hypothetical protein phrog_21764 unknown function unknown function 1 14812 15123
YP_009198613.1 NC_028799_p95 hypothetical protein phrog_23035 unknown function unknown function 1 62666 62779
YP_009198627.1 NC_028799_p109 hypothetical protein phrog_22423 unknown function unknown function 1 65581 65802
YP_009198609.1 NC_028799_p91 hypothetical protein phrog_11073 unknown function unknown function 1 62179 62310
YP_009198594.1 NC_028799_p76 hypothetical protein phrog_2646 unknown function unknown function -1 47183 47590
YP_009198566.1 NC_028799_p48 hypothetical protein phrog_20360 unknown function unknown function 1 16849 17031
YP_009198565.1 NC_028799_p47 PF11753 family protein phrog_236 nucleotide kinase other 1 16553 16846
YP_009198585.1 NC_028799_p67 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 30939 33104
YP_009198584.1 NC_028799_p66 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 29918 30931
YP_009198540.1 NC_028799_p22 hypothetical protein phrog_23967 unknown function unknown function 1 7938 8147
YP_009198554.1 NC_028799_p36 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 11641 12492
YP_009198534.1 NC_028799_p16 DNA-directed RNA polymerase RNAP1 phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 4427 5368
YP_009198549.1 NC_028799_p31 hypothetical protein singleton unknown function unknown function 1 10248 10409
YP_009198612.1 NC_028799_p94 hypothetical protein phrog_35507 unknown function unknown function 1 62545 62679
YP_009198527.1 NC_028799_p9 hypothetical protein phrog_24771 unknown function unknown function 1 2372 2629
YP_009198535.1 NC_028799_p17 hypothetical protein phrog_19932 unknown function unknown function 1 5368 5583
YP_009198519.1 NC_028799_p1 hypothetical protein singleton unknown function unknown function 1 183 389
YP_009198581.1 NC_028799_p63 DNA polymerase phrog_2573 DNA polymerase DNA, RNA and nucleotide metabolism 1 27878 28735
YP_009198531.1 NC_028799_p13 hypothetical protein phrog_17814 unknown function unknown function 1 3658 3897
YP_009198536.1 NC_028799_p18 hypothetical protein phrog_20599 RNA polymerase DNA, RNA and nucleotide metabolism 1 5602 6051
YP_009198546.1 NC_028799_p28 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis -1 9203 9727
YP_009198545.1 NC_028799_p27 hypothetical protein phrog_17135 unknown function unknown function 1 8945 9217
YP_009198572.1 NC_028799_p54 metallopeptidase domain protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20900 22126
YP_009198575.1 NC_028799_p57 hypothetical protein phrog_37832 unknown function unknown function 1 22522 22701
YP_009198567.1 NC_028799_p49 hypothetical protein phrog_19808 unknown function unknown function 1 17045 17683
YP_009198524.1 NC_028799_p6 hypothetical protein phrog_21816 unknown function unknown function 1 1661 1903
YP_009198543.1 NC_028799_p25 hypothetical protein singleton unknown function unknown function 1 8590 8718
YP_009198533.1 NC_028799_p15 hypothetical protein singleton unknown function unknown function 1 4202 4408
YP_009198608.1 NC_028799_p90 hypothetical protein phrog_25798 unknown function unknown function 1 61990 62178
YP_009198564.1 NC_028799_p46 hypothetical protein phrog_18469 unknown function unknown function 1 16101 16556
YP_009198526.1 NC_028799_p8 hypothetical protein phrog_30558 unknown function unknown function 1 2172 2309
YP_009198537.1 NC_028799_p19 hypothetical protein phrog_1035 endonuclease VII DNA, RNA and nucleotide metabolism 1 6193 6750
YP_009198592.1 NC_028799_p74 viron-encapsulated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 36190 45912
YP_009198588.1 NC_028799_p70 ssDNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 34198 34920
YP_009198553.1 NC_028799_p35 hypothetical protein singleton unknown function unknown function 1 11450 11644
YP_009198555.1 NC_028799_p37 hypothetical protein phrog_26869 unknown function unknown function 1 12502 12678
YP_009198576.1 NC_028799_p58 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 22698 23858
YP_009198600.1 NC_028799_p82 hypothetical protein phrog_21748 unknown function unknown function -1 53371 53682
YP_009198528.1 NC_028799_p10 hypothetical protein phrog_21563 unknown function unknown function 1 2801 2986