| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028799 |
Definition |
Vibrio phage phi 1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae. |
DB of origin |
REFSEQ |
Length |
66708 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
110 |
%GC |
34.5 |
Number of singletons |
15 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009198542.1 | NC_028799_p24 | hypothetical protein | phrog_30259 | unknown function | unknown function | 1 | 8382 | 8585 |
| YP_009198563.1 | NC_028799_p45 | hypothetical protein | phrog_21935 | unknown function | unknown function | 1 | 15914 | 16054 |
| YP_009198625.1 | NC_028799_p107 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 64996 | 65208 |
| YP_009198521.1 | NC_028799_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 598 | 990 |
| YP_009198541.1 | NC_028799_p23 | hypothetical protein | phrog_20578 | unknown function | unknown function | 1 | 8180 | 8368 |
| YP_009198539.1 | NC_028799_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7755 | 7937 |
| YP_009198606.1 | NC_028799_p88 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 59671 | 61269 |
| YP_009198614.1 | NC_028799_p96 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62779 | 62895 |
| YP_009198582.1 | NC_028799_p64 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 28811 | 29419 |
| YP_009198607.1 | NC_028799_p89 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 61262 | 61939 |
| YP_009198580.1 | NC_028799_p62 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 27085 | 27618 |
| YP_009198550.1 | NC_028799_p32 | hypothetical protein | phrog_14729 | unknown function | unknown function | 1 | 10411 | 10725 |
| YP_009198595.1 | NC_028799_p77 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 47600 | 49804 |
| YP_009198589.1 | NC_028799_p71 | crossover junction endodeoxyribonuclease RusA | phrog_21721 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 34920 | 35717 |
| YP_009198605.1 | NC_028799_p87 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 58977 | 59663 |
| YP_009198623.1 | NC_028799_p105 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 64596 | 64820 |
| YP_009198529.1 | NC_028799_p11 | hypothetical protein | phrog_18082 | unknown function | unknown function | 1 | 3100 | 3333 |
| YP_009198525.1 | NC_028799_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1900 | 2121 |
| YP_009198583.1 | NC_028799_p65 | phosphoribosyl-ATP diphosphatase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 29469 | 29918 |
| YP_009198601.1 | NC_028799_p83 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 53682 | 55799 |
| YP_009198551.1 | NC_028799_p33 | PF10947 family protein | phrog_18330 | unknown function | unknown function | 1 | 10735 | 11154 |
| YP_009198611.1 | NC_028799_p93 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 62421 | 62564 |
| YP_009198620.1 | NC_028799_p102 | hypothetical protein | phrog_28847 | unknown function | unknown function | 1 | 63985 | 64116 |
| YP_009198617.1 | NC_028799_p99 | hypothetical protein | phrog_37582 | unknown function | unknown function | 1 | 63453 | 63611 |
| YP_009198587.1 | NC_028799_p69 | AAA domain protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 33399 | 34136 |
| YP_009198599.1 | NC_028799_p81 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 52273 | 53367 |
| YP_009198556.1 | NC_028799_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12688 | 12810 |
| YP_009198532.1 | NC_028799_p14 | hypothetical protein | phrog_17814 | unknown function | unknown function | 1 | 3902 | 4141 |
| YP_009198615.1 | NC_028799_p97 | hypothetical protein | phrog_21733 | unknown function | unknown function | 1 | 63083 | 63274 |
| YP_009198590.1 | NC_028799_p72 | hypothetical protein | phrog_32596 | unknown function | unknown function | 1 | 35717 | 35914 |
| YP_009198579.1 | NC_028799_p61 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 26109 | 26663 |
| YP_009198596.1 | NC_028799_p78 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 49827 | 50303 |
| YP_009198562.1 | NC_028799_p44 | hypothetical protein | phrog_18142 | unknown function | unknown function | 1 | 15125 | 15601 |
| YP_009198558.1 | NC_028799_p40 | hypothetical protein | phrog_21600 | unknown function | unknown function | 1 | 13112 | 13327 |
| YP_009198547.1 | NC_028799_p29 | hypothetical protein | phrog_18917 | unknown function | unknown function | 1 | 9751 | 10047 |
| YP_009198603.1 | NC_028799_p85 | hypothetical protein | phrog_35338 | unknown function | unknown function | -1 | 56226 | 57311 |
| YP_009198577.1 | NC_028799_p59 | hypothetical protein | phrog_16775 | unknown function | unknown function | 1 | 23860 | 24309 |
| YP_009198602.1 | NC_028799_p84 | hypothetical protein | phrog_18138 | unknown function | unknown function | 1 | 55869 | 56156 |
| YP_009198598.1 | NC_028799_p80 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 50947 | 52260 |
| YP_009198622.1 | NC_028799_p104 | hypothetical protein | phrog_37787 | unknown function | unknown function | 1 | 64459 | 64599 |
| YP_009198570.1 | NC_028799_p52 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19129 | 19728 |
| YP_009198568.1 | NC_028799_p50 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 17744 | 18199 |
| YP_009198621.1 | NC_028799_p103 | hypothetical protein | phrog_37863 | unknown function | unknown function | 1 | 64332 | 64472 |
| YP_009198586.1 | NC_028799_p68 | hypothetical protein | phrog_14094 | unknown function | unknown function | 1 | 33108 | 33383 |
| YP_009198520.1 | NC_028799_p2 | hypothetical protein | phrog_21645 | unknown function | unknown function | 1 | 389 | 601 |
| YP_009198610.1 | NC_028799_p92 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 62297 | 62434 |
| YP_009198571.1 | NC_028799_p53 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 19959 | 20843 |
| YP_009198591.1 | NC_028799_p73 | hypothetical protein | phrog_38220 | unknown function | unknown function | 1 | 35945 | 36148 |
| YP_009198626.1 | NC_028799_p108 | hypothetical protein | singleton | unknown function | unknown function | 1 | 65199 | 65384 |
| YP_009198624.1 | NC_028799_p106 | hypothetical protein | phrog_10915 | unknown function | unknown function | 1 | 64811 | 65005 |
| YP_009198557.1 | NC_028799_p39 | hypothetical protein | phrog_9685 | unknown function | unknown function | 1 | 12905 | 13105 |
| YP_009198523.1 | NC_028799_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1373 | 1624 |
| YP_009198552.1 | NC_028799_p34 | lipoprotein | phrog_21339 | lipoprotein | other | 1 | 11151 | 11453 |
| YP_009198538.1 | NC_028799_p20 | DNA-directed RNA polymerase RNAP2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6918 | 7703 |
| YP_009198569.1 | NC_028799_p51 | hypothetical protein | phrog_21479 | unknown function | unknown function | 1 | 18827 | 19027 |
| YP_009198574.1 | NC_028799_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22344 | 22535 |
| YP_009198604.1 | NC_028799_p86 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57313 | 58980 |
| YP_009198544.1 | NC_028799_p26 | hypothetical protein | phrog_25910 | unknown function | unknown function | 1 | 8727 | 8972 |
| YP_009198578.1 | NC_028799_p60 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 24424 | 25992 |
| YP_009198522.1 | NC_028799_p4 | hypothetical protein | phrog_33864 | unknown function | unknown function | 1 | 1071 | 1235 |
| YP_009198548.1 | NC_028799_p30 | hypothetical protein | phrog_29791 | unknown function | unknown function | 1 | 10049 | 10246 |
| YP_009198628.1 | NC_028799_p110 | hypothetical protein | phrog_21584 | unknown function | unknown function | -1 | 65896 | 66393 |
| YP_009198618.1 | NC_028799_p100 | hypothetical protein | phrog_29404 | unknown function | unknown function | 1 | 63694 | 63870 |
| YP_009198616.1 | NC_028799_p98 | hypothetical protein | phrog_21771 | unknown function | unknown function | 1 | 63261 | 63386 |
| YP_009198560.1 | NC_028799_p42 | hypothetical protein | phrog_8697 | unknown function | unknown function | 1 | 14631 | 14792 |
| YP_009198619.1 | NC_028799_p101 | hypothetical protein | phrog_25913 | unknown function | unknown function | 1 | 63867 | 63998 |
| YP_009198593.1 | NC_028799_p75 | hypothetical protein | phrog_17660 | unknown function | unknown function | -1 | 45912 | 47180 |
| YP_009198559.1 | NC_028799_p41 | hypothetical protein | phrog_11852 | unknown function | unknown function | 1 | 13634 | 13960 |
| YP_009198597.1 | NC_028799_p79 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 50306 | 50890 |
| YP_009198573.1 | NC_028799_p55 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22178 | 22372 |
| YP_009198530.1 | NC_028799_p12 | hypothetical protein | phrog_21216 | unknown function | unknown function | 1 | 3389 | 3655 |
| YP_009198561.1 | NC_028799_p43 | hypothetical protein | phrog_21764 | unknown function | unknown function | 1 | 14812 | 15123 |
| YP_009198613.1 | NC_028799_p95 | hypothetical protein | phrog_23035 | unknown function | unknown function | 1 | 62666 | 62779 |
| YP_009198627.1 | NC_028799_p109 | hypothetical protein | phrog_22423 | unknown function | unknown function | 1 | 65581 | 65802 |
| YP_009198609.1 | NC_028799_p91 | hypothetical protein | phrog_11073 | unknown function | unknown function | 1 | 62179 | 62310 |
| YP_009198594.1 | NC_028799_p76 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 47183 | 47590 |
| YP_009198566.1 | NC_028799_p48 | hypothetical protein | phrog_20360 | unknown function | unknown function | 1 | 16849 | 17031 |
| YP_009198565.1 | NC_028799_p47 | PF11753 family protein | phrog_236 | nucleotide kinase | other | 1 | 16553 | 16846 |
| YP_009198585.1 | NC_028799_p67 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 30939 | 33104 |
| YP_009198584.1 | NC_028799_p66 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 29918 | 30931 |
| YP_009198540.1 | NC_028799_p22 | hypothetical protein | phrog_23967 | unknown function | unknown function | 1 | 7938 | 8147 |
| YP_009198554.1 | NC_028799_p36 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 11641 | 12492 |
| YP_009198534.1 | NC_028799_p16 | DNA-directed RNA polymerase RNAP1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4427 | 5368 |
| YP_009198549.1 | NC_028799_p31 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10248 | 10409 |
| YP_009198612.1 | NC_028799_p94 | hypothetical protein | phrog_35507 | unknown function | unknown function | 1 | 62545 | 62679 |
| YP_009198527.1 | NC_028799_p9 | hypothetical protein | phrog_24771 | unknown function | unknown function | 1 | 2372 | 2629 |
| YP_009198535.1 | NC_028799_p17 | hypothetical protein | phrog_19932 | unknown function | unknown function | 1 | 5368 | 5583 |
| YP_009198519.1 | NC_028799_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 183 | 389 |
| YP_009198581.1 | NC_028799_p63 | DNA polymerase | phrog_2573 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 27878 | 28735 |
| YP_009198531.1 | NC_028799_p13 | hypothetical protein | phrog_17814 | unknown function | unknown function | 1 | 3658 | 3897 |
| YP_009198536.1 | NC_028799_p18 | hypothetical protein | phrog_20599 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5602 | 6051 |
| YP_009198546.1 | NC_028799_p28 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | -1 | 9203 | 9727 |
| YP_009198545.1 | NC_028799_p27 | hypothetical protein | phrog_17135 | unknown function | unknown function | 1 | 8945 | 9217 |
| YP_009198572.1 | NC_028799_p54 | metallopeptidase domain protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20900 | 22126 |
| YP_009198575.1 | NC_028799_p57 | hypothetical protein | phrog_37832 | unknown function | unknown function | 1 | 22522 | 22701 |
| YP_009198567.1 | NC_028799_p49 | hypothetical protein | phrog_19808 | unknown function | unknown function | 1 | 17045 | 17683 |
| YP_009198524.1 | NC_028799_p6 | hypothetical protein | phrog_21816 | unknown function | unknown function | 1 | 1661 | 1903 |
| YP_009198543.1 | NC_028799_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8590 | 8718 |
| YP_009198533.1 | NC_028799_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4202 | 4408 |
| YP_009198608.1 | NC_028799_p90 | hypothetical protein | phrog_25798 | unknown function | unknown function | 1 | 61990 | 62178 |
| YP_009198564.1 | NC_028799_p46 | hypothetical protein | phrog_18469 | unknown function | unknown function | 1 | 16101 | 16556 |
| YP_009198526.1 | NC_028799_p8 | hypothetical protein | phrog_30558 | unknown function | unknown function | 1 | 2172 | 2309 |
| YP_009198537.1 | NC_028799_p19 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 6193 | 6750 |
| YP_009198592.1 | NC_028799_p74 | viron-encapsulated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 36190 | 45912 |
| YP_009198588.1 | NC_028799_p70 | ssDNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 34198 | 34920 |
| YP_009198553.1 | NC_028799_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11450 | 11644 |
| YP_009198555.1 | NC_028799_p37 | hypothetical protein | phrog_26869 | unknown function | unknown function | 1 | 12502 | 12678 |
| YP_009198576.1 | NC_028799_p58 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 22698 | 23858 |
| YP_009198600.1 | NC_028799_p82 | hypothetical protein | phrog_21748 | unknown function | unknown function | -1 | 53371 | 53682 |
| YP_009198528.1 | NC_028799_p10 | hypothetical protein | phrog_21563 | unknown function | unknown function | 1 | 2801 | 2986 |