| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028804 |
Definition |
Mycobacterium phage Barriga, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52643 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
101 |
%GC |
63.39 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199053.1 | NC_028804_p93 | hypothetical protein | phrog_28071 | unknown function | unknown function | -1 | 49588 | 49719 |
| YP_009198988.1 | NC_028804_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 22792 | 23238 |
| YP_009199023.1 | NC_028804_p63 | hypothetical protein | phrog_9840 | unknown function | unknown function | -1 | 39826 | 39957 |
| YP_009199012.1 | NC_028804_p52 | excisionase | phrog_221 | metallo-phosphoesterase | other | -1 | 36345 | 37112 |
| YP_009199061.1 | NC_028804_p101 | hypothetical protein | phrog_15488 | unknown function | unknown function | -1 | 52187 | 52576 |
| YP_009199014.1 | NC_028804_p54 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37276 | 37755 |
| YP_009199047.1 | NC_028804_p87 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48518 | 48685 |
| YP_009199059.1 | NC_028804_p99 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 51695 | 51850 |
| YP_009199028.1 | NC_028804_p68 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 41449 | 41766 |
| YP_009199038.1 | NC_028804_p78 | hypothetical protein | phrog_14169 | zinc-finger domain protein | other | -1 | 45521 | 45748 |
| YP_009199049.1 | NC_028804_p89 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 48804 | 48974 |
| YP_009199026.1 | NC_028804_p66 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 41016 | 41147 |
| YP_009198973.1 | NC_028804_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9981 | 10862 |
| YP_009198976.1 | NC_028804_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12529 | 12765 |
| YP_009199001.1 | NC_028804_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31467 | 31553 |
| YP_009198961.1 | NC_028804_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 600 | 752 |
| YP_009199037.1 | NC_028804_p77 | hypothetical protein | phrog_11473 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 45049 | 45531 |
| YP_009199034.1 | NC_028804_p74 | hypothetical protein | phrog_5947 | unknown function | unknown function | -1 | 44399 | 44551 |
| YP_009198995.1 | NC_028804_p35 | minor tail protein | phrog_754 | minor tail protein | tail | 1 | 27886 | 28467 |
| YP_009199009.1 | NC_028804_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35239 | 35424 |
| YP_009198977.1 | NC_028804_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12765 | 13214 |
| YP_009198967.1 | NC_028804_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3933 | 4193 |
| YP_009198962.1 | NC_028804_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 749 | 1045 |
| YP_009199008.1 | NC_028804_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 34751 | 35242 |
| YP_009198982.1 | NC_028804_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15388 | 16187 |
| YP_009198992.1 | NC_028804_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 25797 | 27275 |
| YP_009199042.1 | NC_028804_p82 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47269 | 47568 |
| YP_009198999.1 | NC_028804_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 30914 | 31303 |
| YP_009198975.1 | NC_028804_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11443 | 12450 |
| YP_009199016.1 | NC_028804_p56 | DNA Primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38119 | 38634 |
| YP_009198980.1 | NC_028804_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 13975 | 14421 |
| YP_009199040.1 | NC_028804_p80 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46059 | 46454 |
| YP_009199027.1 | NC_028804_p67 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41159 | 41452 |
| YP_009199003.1 | NC_028804_p43 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 31828 | 32079 |
| YP_009198986.1 | NC_028804_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 20770 | 20952 |
| YP_009198964.1 | NC_028804_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1643 | 1873 |
| YP_009199035.1 | NC_028804_p75 | hypothetical protein | phrog_12594 | unknown function | unknown function | -1 | 44585 | 44752 |
| YP_009199019.1 | NC_028804_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 38845 | 38979 |
| YP_009199007.1 | NC_028804_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34490 | 34720 |
| YP_009198993.1 | NC_028804_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27368 | 27688 |
| YP_009199015.1 | NC_028804_p55 | DNA Primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 37752 | 38273 |
| YP_009199054.1 | NC_028804_p94 | NifU-like protein | phrog_8429 | NifU-like Fe-S cluster assembly protein | moron, auxiliary metabolic gene and host takeover | -1 | 49737 | 50159 |
| YP_009199043.1 | NC_028804_p83 | hypothetical protein | phrog_7977 | unknown function | unknown function | -1 | 47561 | 47830 |
| YP_009199030.1 | NC_028804_p70 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 41981 | 42784 |
| YP_009199044.1 | NC_028804_p84 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 47864 | 48133 |
| YP_009199048.1 | NC_028804_p88 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 48682 | 48807 |
| YP_009198968.1 | NC_028804_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4201 | 4458 |
| YP_009199055.1 | NC_028804_p95 | tRNA methyltransferase | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 50156 | 51076 |
| YP_009199005.1 | NC_028804_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32501 | 34327 |
| YP_009198983.1 | NC_028804_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15388 | 15765 |
| YP_009198991.1 | NC_028804_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 23951 | 25804 |
| YP_009199032.1 | NC_028804_p72 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 43832 | 44296 |
| YP_009198965.1 | NC_028804_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2138 | 3208 |
| YP_009199024.1 | NC_028804_p64 | NrdH-like protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 39954 | 40220 |
| YP_009199006.1 | NC_028804_p46 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 34368 | 34493 |
| YP_009199056.1 | NC_028804_p96 | hypothetical protein | phrog_14752 | unknown function | unknown function | -1 | 51073 | 51225 |
| YP_009198970.1 | NC_028804_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5869 | 6837 |
| YP_009199051.1 | NC_028804_p91 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 49139 | 49456 |
| YP_009198998.1 | NC_028804_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 30645 | 30917 |
| YP_009199029.1 | NC_028804_p69 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 41763 | 41954 |
| YP_009199039.1 | NC_028804_p79 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 45745 | 46062 |
| YP_009199002.1 | NC_028804_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31559 | 31831 |
| YP_009199000.1 | NC_028804_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31300 | 31470 |
| YP_009198974.1 | NC_028804_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10920 | 11432 |
| YP_009199013.1 | NC_028804_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37109 | 37279 |
| YP_009199017.1 | NC_028804_p57 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38613 | 38777 |
| YP_009199060.1 | NC_028804_p100 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 51933 | 52139 |
| YP_009198987.1 | NC_028804_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20952 | 22754 |
| YP_009199045.1 | NC_028804_p85 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48130 | 48333 |
| YP_009199058.1 | NC_028804_p98 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51459 | 51578 |
| YP_009199052.1 | NC_028804_p92 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49518 | 49604 |
| YP_009198997.1 | NC_028804_p37 | integrase | phrog_95 | integrase | integration and excision | 1 | 29037 | 30524 |
| YP_009198994.1 | NC_028804_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 27698 | 27889 |
| YP_009198981.1 | NC_028804_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14430 | 15278 |
| YP_009198966.1 | NC_028804_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3218 | 3919 |
| YP_009199046.1 | NC_028804_p86 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48330 | 48518 |
| YP_009198985.1 | NC_028804_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18694 | 20751 |
| YP_009199020.1 | NC_028804_p60 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38976 | 39467 |
| YP_009199018.1 | NC_028804_p58 | hypothetical protein | phrog_5801 | unknown function | unknown function | -1 | 38774 | 38848 |
| YP_009198996.1 | NC_028804_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 28587 | 28871 |
| YP_009198978.1 | NC_028804_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13214 | 13576 |
| YP_009199010.1 | NC_028804_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35421 | 36212 |
| YP_009198979.1 | NC_028804_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13576 | 13971 |
| YP_009198984.1 | NC_028804_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16199 | 18670 |
| YP_009198963.1 | NC_028804_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1080 | 1520 |
| YP_009199041.1 | NC_028804_p81 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 46496 | 47008 |
| YP_009199004.1 | NC_028804_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32115 | 32480 |
| YP_009199050.1 | NC_028804_p90 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 48993 | 49142 |
| YP_009199021.1 | NC_028804_p61 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 39454 | 39540 |
| YP_009198969.1 | NC_028804_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4458 | 5879 |
| YP_009199022.1 | NC_028804_p62 | hypothetical protein | phrog_2591 | unknown function | unknown function | -1 | 39578 | 39826 |
| YP_009199033.1 | NC_028804_p73 | hypothetical protein | phrog_6068 | unknown function | unknown function | -1 | 44293 | 44406 |
| YP_009198990.1 | NC_028804_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23579 | 23926 |
| YP_009198971.1 | NC_028804_p11 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 6857 | 8545 |
| YP_009198989.1 | NC_028804_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23250 | 23582 |
| YP_009199057.1 | NC_028804_p97 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 51222 | 51434 |
| YP_009199036.1 | NC_028804_p76 | hypothetical protein | phrog_12774 | unknown function | unknown function | -1 | 44764 | 45036 |
| YP_009198972.1 | NC_028804_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8542 | 9984 |
| YP_009199025.1 | NC_028804_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40220 | 41029 |
| YP_009199011.1 | NC_028804_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36205 | 36345 |
| YP_009199031.1 | NC_028804_p71 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 42781 | 43491 |