Genomic map of Pseudomonas phage PaMx74 (NC_028809)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028809
Definition
Pseudomonas phage PaMx74, partial genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus.
DB of origin
REFSEQ
Length
58637
Host Name
Pseudomonas aeruginosa
Host domain
Bacteria
Is prophage?
undef
Number of proteins
75
%GC
68.38
Number of singletons
7
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009199469.1 NC_028809_p30 virion structural protein phrog_687 structural protein head and packaging 1 24311 25840
YP_009199481.1 NC_028809_p42 hypothetical protein singleton unknown function unknown function -1 35469 35702
YP_009199466.1 NC_028809_p27 hypothetical protein phrog_313 Tail assembly chaperone tail 1 21094 21549
YP_009199483.1 NC_028809_p44 hypothetical protein phrog_17853 unknown function unknown function -1 36051 36356
YP_009199443.1 NC_028809_p4 terminase large subunit phrog_2 terminase large subunit head and packaging 1 1705 3168
YP_009199459.1 NC_028809_p20 hypothetical protein phrog_6213 unknown function unknown function 1 17389 17916
YP_009199474.1 NC_028809_p35 hypothetical protein phrog_1196 tail assembly chaperone tail 1 29592 29804
YP_009199490.1 NC_028809_p51 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism -1 40035 40496
YP_009199487.1 NC_028809_p48 hypothetical protein singleton unknown function unknown function -1 38317 38625
YP_009199457.1 NC_028809_p18 hypothetical protein singleton unknown function unknown function -1 15525 15893
YP_009199495.1 NC_028809_p56 hypothetical protein phrog_17205 unknown function unknown function -1 43598 44068
YP_009199480.1 NC_028809_p41 hypothetical protein phrog_6420 unknown function unknown function 1 35103 35384
YP_009199511.1 NC_028809_p72 hypothetical protein phrog_17764 unknown function unknown function -1 54696 54977
YP_009199473.1 NC_028809_p34 virion structural protein phrog_1180 tail assembly chaperone tail 1 29365 29595
YP_009199442.1 NC_028809_p3 hypothetical protein phrog_6596 unknown function unknown function 1 1295 1705
YP_009199478.1 NC_028809_p39 virion structural protein phrog_739 Rz-like spanin lysis 1 34320 34781
YP_009199485.1 NC_028809_p46 hypothetical protein phrog_16873 unknown function unknown function -1 36651 37223
YP_009199494.1 NC_028809_p55 hypothetical protein phrog_11422 unknown function unknown function -1 42495 43496
YP_009199471.1 NC_028809_p32 virion structural protein phrog_1082 tail assembly protein tail 1 26854 28539
YP_009199456.1 NC_028809_p17 hypothetical protein phrog_21393 unknown function unknown function -1 15008 15511
YP_009199464.1 NC_028809_p25 tail terminator protein phrog_179 tail terminator connector 1 19483 19902
YP_009199463.1 NC_028809_p24 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 19066 19467
YP_009199506.1 NC_028809_p67 DNA binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 50854 51456
YP_009199510.1 NC_028809_p71 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 53153 54646
YP_009199446.1 NC_028809_p7 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 4223 5962
YP_009199505.1 NC_028809_p66 hypothetical protein phrog_7860 unknown function unknown function -1 50547 50735
YP_009199452.1 NC_028809_p13 morphogenesis protein phrog_241 head morphogenesis head and packaging 1 11346 12539
YP_009199461.1 NC_028809_p22 virion structural protein phrog_477 head-tail adaptor Ad1 connector 1 18171 18695
YP_009199488.1 NC_028809_p49 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism -1 38707 39180
YP_009199512.1 NC_028809_p73 hypothetical protein phrog_18196 unknown function unknown function -1 54965 55504
YP_009199465.1 NC_028809_p26 major tail structural protein phrog_290 minor tail protein tail 1 19952 21094
YP_009199499.1 NC_028809_p60 hypothetical protein phrog_1934 unknown function unknown function -1 48223 48663
YP_009199477.1 NC_028809_p38 endolysin phrog_465 endolysin lysis 1 33809 34309
YP_009199440.1 NC_028809_p1 terminase small subunit phrog_4044 terminase small subunit head and packaging 1 274 879
YP_009199470.1 NC_028809_p31 virion structural protein phrog_687 structural protein head and packaging 1 25851 26852
YP_009199441.1 NC_028809_p2 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 958 1215
YP_009199468.1 NC_028809_p29 tail tape measure protein phrog_1538 tail length tape measure protein tail 1 21862 24297
YP_009199508.1 NC_028809_p69 nucleotide pyrophosphohydrolase phrog_229 MazG-like pyrophosphatase other -1 51871 52449
YP_009199503.1 NC_028809_p64 hypothetical protein singleton unknown function unknown function -1 49638 49859
YP_009199486.1 NC_028809_p47 hypothetical protein phrog_17767 unknown function unknown function -1 37363 38097
YP_009199491.1 NC_028809_p52 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 40496 41392
YP_009199479.1 NC_028809_p40 hypothetical protein phrog_812 Rz-like spanin lysis 1 34765 34986
YP_009199454.1 NC_028809_p15 hypothetical protein phrog_18209 unknown function unknown function -1 13498 14385
YP_009199455.1 NC_028809_p16 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism -1 14382 15062
YP_009199472.1 NC_028809_p33 virion structural protein phrog_778 tail assembly protein tail 1 28542 29354
YP_009199460.1 NC_028809_p21 hypothetical protein phrog_19293 virion structural protein head and packaging 1 17930 18160
YP_009199451.1 NC_028809_p12 portal protein phrog_145 portal protein head and packaging 1 9871 11346
YP_009199476.1 NC_028809_p37 hypothetical protein phrog_14936 unknown function unknown function 1 33495 33812
YP_009199514.1 NC_028809_p75 primase/polymerase phrog_1156 DNA primase DNA, RNA and nucleotide metabolism 1 55898 58228
YP_009199484.1 NC_028809_p45 HIRAN domain-containing protein phrog_18569 unknown function unknown function -1 36358 36645
YP_009199444.1 NC_028809_p5 hypothetical protein singleton unknown function unknown function 1 3435 3563
YP_009199507.1 NC_028809_p68 hypothetical protein phrog_464 unknown function unknown function -1 51578 51874
YP_009199453.1 NC_028809_p14 virion structural protein phrog_206 head scaffolding protein head and packaging 1 12670 13446
YP_009199448.1 NC_028809_p9 hypothetical protein phrog_7678 unknown function unknown function 1 7762 8268
YP_009199513.1 NC_028809_p74 hypothetical protein singleton unknown function unknown function 1 55713 55901
YP_009199475.1 NC_028809_p36 virion structural protein phrog_6284 tail protein tail 1 29791 33495
YP_009199450.1 NC_028809_p11 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 8817 9716
YP_009199498.1 NC_028809_p59 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 45886 48189
YP_009199489.1 NC_028809_p50 dihydrofolate reductase phrog_13578 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 39165 39632
YP_009199447.1 NC_028809_p8 hypothetical protein phrog_1735 unknown function unknown function 1 6069 7682
YP_009199445.1 NC_028809_p6 hypothetical protein phrog_23866 unknown function unknown function 1 3630 4049
YP_009199449.1 NC_028809_p10 hypothetical protein singleton unknown function unknown function 1 8279 8824
YP_009199492.1 NC_028809_p53 nucleotide pyrophosphohydrolase phrog_18404 hydrolase other -1 41389 42126
YP_009199467.1 NC_028809_p28 hypothetical protein phrog_4966 unknown function unknown function 1 21588 21833
YP_009199496.1 NC_028809_p57 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 44207 45700
YP_009199482.1 NC_028809_p43 hypothetical protein phrog_8293 unknown function unknown function -1 35772 36026
YP_009199500.1 NC_028809_p61 hypothetical protein phrog_18147 unknown function unknown function -1 48657 49052
YP_009199458.1 NC_028809_p19 major head protein phrog_212 major head protein head and packaging 1 16383 17312
YP_009199504.1 NC_028809_p65 hypothetical protein phrog_421 unknown function unknown function -1 49861 50550
YP_009199502.1 NC_028809_p63 hypothetical protein phrog_18640 unknown function unknown function -1 49309 49641
YP_009199501.1 NC_028809_p62 hypothetical protein phrog_25659 unknown function unknown function -1 49049 49312
YP_009199462.1 NC_028809_p23 virion structural protein phrog_161 head closure Hc1 connector 1 18697 19062
YP_009199509.1 NC_028809_p70 hypothetical protein phrog_17547 unknown function unknown function -1 52446 53081
YP_009199497.1 NC_028809_p58 hypothetical protein phrog_25007 unknown function unknown function -1 45684 45875
YP_009199493.1 NC_028809_p54 hypothetical protein phrog_2053 unknown function unknown function -1 42274 42495