| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028809 |
Definition |
Pseudomonas phage PaMx74, partial genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Pamexvirus. |
DB of origin |
REFSEQ |
Length |
58637 |
Host Name |
Pseudomonas aeruginosa |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
75 |
%GC |
68.38 |
Number of singletons |
7 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199469.1 | NC_028809_p30 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 24311 | 25840 |
| YP_009199481.1 | NC_028809_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 35469 | 35702 |
| YP_009199466.1 | NC_028809_p27 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 21094 | 21549 |
| YP_009199483.1 | NC_028809_p44 | hypothetical protein | phrog_17853 | unknown function | unknown function | -1 | 36051 | 36356 |
| YP_009199443.1 | NC_028809_p4 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 1705 | 3168 |
| YP_009199459.1 | NC_028809_p20 | hypothetical protein | phrog_6213 | unknown function | unknown function | 1 | 17389 | 17916 |
| YP_009199474.1 | NC_028809_p35 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 29592 | 29804 |
| YP_009199490.1 | NC_028809_p51 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | -1 | 40035 | 40496 |
| YP_009199487.1 | NC_028809_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38317 | 38625 |
| YP_009199457.1 | NC_028809_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15525 | 15893 |
| YP_009199495.1 | NC_028809_p56 | hypothetical protein | phrog_17205 | unknown function | unknown function | -1 | 43598 | 44068 |
| YP_009199480.1 | NC_028809_p41 | hypothetical protein | phrog_6420 | unknown function | unknown function | 1 | 35103 | 35384 |
| YP_009199511.1 | NC_028809_p72 | hypothetical protein | phrog_17764 | unknown function | unknown function | -1 | 54696 | 54977 |
| YP_009199473.1 | NC_028809_p34 | virion structural protein | phrog_1180 | tail assembly chaperone | tail | 1 | 29365 | 29595 |
| YP_009199442.1 | NC_028809_p3 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 1295 | 1705 |
| YP_009199478.1 | NC_028809_p39 | virion structural protein | phrog_739 | Rz-like spanin | lysis | 1 | 34320 | 34781 |
| YP_009199485.1 | NC_028809_p46 | hypothetical protein | phrog_16873 | unknown function | unknown function | -1 | 36651 | 37223 |
| YP_009199494.1 | NC_028809_p55 | hypothetical protein | phrog_11422 | unknown function | unknown function | -1 | 42495 | 43496 |
| YP_009199471.1 | NC_028809_p32 | virion structural protein | phrog_1082 | tail assembly protein | tail | 1 | 26854 | 28539 |
| YP_009199456.1 | NC_028809_p17 | hypothetical protein | phrog_21393 | unknown function | unknown function | -1 | 15008 | 15511 |
| YP_009199464.1 | NC_028809_p25 | tail terminator protein | phrog_179 | tail terminator | connector | 1 | 19483 | 19902 |
| YP_009199463.1 | NC_028809_p24 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 19066 | 19467 |
| YP_009199506.1 | NC_028809_p67 | DNA binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 50854 | 51456 |
| YP_009199510.1 | NC_028809_p71 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 53153 | 54646 |
| YP_009199446.1 | NC_028809_p7 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 4223 | 5962 |
| YP_009199505.1 | NC_028809_p66 | hypothetical protein | phrog_7860 | unknown function | unknown function | -1 | 50547 | 50735 |
| YP_009199452.1 | NC_028809_p13 | morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 11346 | 12539 |
| YP_009199461.1 | NC_028809_p22 | virion structural protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 18171 | 18695 |
| YP_009199488.1 | NC_028809_p49 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 38707 | 39180 |
| YP_009199512.1 | NC_028809_p73 | hypothetical protein | phrog_18196 | unknown function | unknown function | -1 | 54965 | 55504 |
| YP_009199465.1 | NC_028809_p26 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 19952 | 21094 |
| YP_009199499.1 | NC_028809_p60 | hypothetical protein | phrog_1934 | unknown function | unknown function | -1 | 48223 | 48663 |
| YP_009199477.1 | NC_028809_p38 | endolysin | phrog_465 | endolysin | lysis | 1 | 33809 | 34309 |
| YP_009199440.1 | NC_028809_p1 | terminase small subunit | phrog_4044 | terminase small subunit | head and packaging | 1 | 274 | 879 |
| YP_009199470.1 | NC_028809_p31 | virion structural protein | phrog_687 | structural protein | head and packaging | 1 | 25851 | 26852 |
| YP_009199441.1 | NC_028809_p2 | hypothetical protein | phrog_54 | DksA-like zinc-finger protein | other | 1 | 958 | 1215 |
| YP_009199468.1 | NC_028809_p29 | tail tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 21862 | 24297 |
| YP_009199508.1 | NC_028809_p69 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 51871 | 52449 |
| YP_009199503.1 | NC_028809_p64 | hypothetical protein | singleton | unknown function | unknown function | -1 | 49638 | 49859 |
| YP_009199486.1 | NC_028809_p47 | hypothetical protein | phrog_17767 | unknown function | unknown function | -1 | 37363 | 38097 |
| YP_009199491.1 | NC_028809_p52 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 40496 | 41392 |
| YP_009199479.1 | NC_028809_p40 | hypothetical protein | phrog_812 | Rz-like spanin | lysis | 1 | 34765 | 34986 |
| YP_009199454.1 | NC_028809_p15 | hypothetical protein | phrog_18209 | unknown function | unknown function | -1 | 13498 | 14385 |
| YP_009199455.1 | NC_028809_p16 | hypothetical protein | phrog_624 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 14382 | 15062 |
| YP_009199472.1 | NC_028809_p33 | virion structural protein | phrog_778 | tail assembly protein | tail | 1 | 28542 | 29354 |
| YP_009199460.1 | NC_028809_p21 | hypothetical protein | phrog_19293 | virion structural protein | head and packaging | 1 | 17930 | 18160 |
| YP_009199451.1 | NC_028809_p12 | portal protein | phrog_145 | portal protein | head and packaging | 1 | 9871 | 11346 |
| YP_009199476.1 | NC_028809_p37 | hypothetical protein | phrog_14936 | unknown function | unknown function | 1 | 33495 | 33812 |
| YP_009199514.1 | NC_028809_p75 | primase/polymerase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 55898 | 58228 |
| YP_009199484.1 | NC_028809_p45 | HIRAN domain-containing protein | phrog_18569 | unknown function | unknown function | -1 | 36358 | 36645 |
| YP_009199444.1 | NC_028809_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3435 | 3563 |
| YP_009199507.1 | NC_028809_p68 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 51578 | 51874 |
| YP_009199453.1 | NC_028809_p14 | virion structural protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 12670 | 13446 |
| YP_009199448.1 | NC_028809_p9 | hypothetical protein | phrog_7678 | unknown function | unknown function | 1 | 7762 | 8268 |
| YP_009199513.1 | NC_028809_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55713 | 55901 |
| YP_009199475.1 | NC_028809_p36 | virion structural protein | phrog_6284 | tail protein | tail | 1 | 29791 | 33495 |
| YP_009199450.1 | NC_028809_p11 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8817 | 9716 |
| YP_009199498.1 | NC_028809_p59 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 45886 | 48189 |
| YP_009199489.1 | NC_028809_p50 | dihydrofolate reductase | phrog_13578 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 39165 | 39632 |
| YP_009199447.1 | NC_028809_p8 | hypothetical protein | phrog_1735 | unknown function | unknown function | 1 | 6069 | 7682 |
| YP_009199445.1 | NC_028809_p6 | hypothetical protein | phrog_23866 | unknown function | unknown function | 1 | 3630 | 4049 |
| YP_009199449.1 | NC_028809_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8279 | 8824 |
| YP_009199492.1 | NC_028809_p53 | nucleotide pyrophosphohydrolase | phrog_18404 | hydrolase | other | -1 | 41389 | 42126 |
| YP_009199467.1 | NC_028809_p28 | hypothetical protein | phrog_4966 | unknown function | unknown function | 1 | 21588 | 21833 |
| YP_009199496.1 | NC_028809_p57 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 44207 | 45700 |
| YP_009199482.1 | NC_028809_p43 | hypothetical protein | phrog_8293 | unknown function | unknown function | -1 | 35772 | 36026 |
| YP_009199500.1 | NC_028809_p61 | hypothetical protein | phrog_18147 | unknown function | unknown function | -1 | 48657 | 49052 |
| YP_009199458.1 | NC_028809_p19 | major head protein | phrog_212 | major head protein | head and packaging | 1 | 16383 | 17312 |
| YP_009199504.1 | NC_028809_p65 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 49861 | 50550 |
| YP_009199502.1 | NC_028809_p63 | hypothetical protein | phrog_18640 | unknown function | unknown function | -1 | 49309 | 49641 |
| YP_009199501.1 | NC_028809_p62 | hypothetical protein | phrog_25659 | unknown function | unknown function | -1 | 49049 | 49312 |
| YP_009199462.1 | NC_028809_p23 | virion structural protein | phrog_161 | head closure Hc1 | connector | 1 | 18697 | 19062 |
| YP_009199509.1 | NC_028809_p70 | hypothetical protein | phrog_17547 | unknown function | unknown function | -1 | 52446 | 53081 |
| YP_009199497.1 | NC_028809_p58 | hypothetical protein | phrog_25007 | unknown function | unknown function | -1 | 45684 | 45875 |
| YP_009199493.1 | NC_028809_p54 | hypothetical protein | phrog_2053 | unknown function | unknown function | -1 | 42274 | 42495 |