Genomic map of Mycobacterium phage Rufus (NC_028810)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028810
Definition
Mycobacterium phage Rufus, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
52357
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
93
%GC
63.85
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009199576.1 NC_028810_p62 hypothetical protein phrog_1019 unknown function unknown function -1 41099 41185
YP_009199531.1 NC_028810_p17 hypothetical protein phrog_1857 head-tail connector protein connector 1 12806 13324
YP_009199551.1 NC_028810_p37 hypothetical protein singleton unknown function unknown function 1 29296 29400
YP_009199543.1 NC_028810_p29 hypothetical protein phrog_352 minor tail protein tail 1 23346 23792
YP_009199562.1 NC_028810_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35142 35636
YP_009199553.1 NC_028810_p39 serine integrase phrog_95 integrase integration and excision 1 29957 31459
YP_009199582.1 NC_028810_p68 hypothetical protein phrog_520 unknown function unknown function -1 42737 43030
YP_009199545.1 NC_028810_p31 hypothetical protein phrog_1397 unknown function unknown function 1 24133 24480
YP_009199526.1 NC_028810_p12 terminase phrog_9 terminase large subunit head and packaging 1 7137 8825
YP_009199515.1 NC_028810_p1 hypothetical protein phrog_4649 unknown function unknown function 1 598 750
YP_009199570.1 NC_028810_p56 DNA topoisomerase primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 38318 38896
YP_009199591.1 NC_028810_p77 hypothetical protein phrog_1809 unknown function unknown function -1 46742 47137
YP_009199532.1 NC_028810_p18 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13324 13773
YP_009199574.1 NC_028810_p60 hypothetical protein phrog_67 DNA methyltransferase other -1 39494 40606
YP_009199554.1 NC_028810_p40 hypothetical protein phrog_1966 unknown function unknown function -1 31582 31854
YP_009199561.1 NC_028810_p47 hypothetical protein phrog_1781 unknown function unknown function -1 34881 35111
YP_009199583.1 NC_028810_p69 hypothetical protein phrog_2184 unknown function unknown function -1 43027 43347
YP_009199516.1 NC_028810_p2 hypothetical protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 747 1043
YP_009199535.1 NC_028810_p21 hypothetical protein phrog_123 tail terminator connector 1 14534 14980
YP_009199586.1 NC_028810_p72 hypothetical protein phrog_8167 unknown function unknown function -1 44360 44695
YP_009199581.1 NC_028810_p67 hypothetical protein phrog_1705 unknown function unknown function -1 42618 42740
YP_009199607.1 NC_028810_p93 hypothetical protein phrog_828 unknown function unknown function -1 51771 51974
YP_009199592.1 NC_028810_p78 hypothetical protein phrog_357 transcriptional repressor transcription regulation -1 47179 47691
YP_009199572.1 NC_028810_p58 hypothetical protein phrog_1783 unknown function unknown function -1 39179 39337
YP_009199580.1 NC_028810_p66 hypothetical protein phrog_2507 unknown function unknown function -1 42445 42621
YP_009199549.1 NC_028810_p35 hypothetical protein phrog_1560 unknown function unknown function 1 28252 28443
YP_009199556.1 NC_028810_p42 hypothetical protein phrog_1860 unknown function unknown function -1 32018 32113
YP_009199520.1 NC_028810_p6 hypothetical protein phrog_553 minor tail protein tail 1 2984 3685
YP_009199542.1 NC_028810_p28 minor tail protein phrog_110 minor tail protein tail 1 21506 23308
YP_009199566.1 NC_028810_p52 RDF/NrdC protein phrog_221 metallo-phosphoesterase other -1 36765 37532
YP_009199584.1 NC_028810_p70 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43351 43533
YP_009199567.1 NC_028810_p53 hypothetical protein phrog_1503 unknown function unknown function -1 37529 37708
YP_009199563.1 NC_028810_p49 hypothetical protein phrog_499 unknown function unknown function -1 35633 35815
YP_009199585.1 NC_028810_p71 RecB phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43560 44360
YP_009199594.1 NC_028810_p80 hypothetical protein phrog_1720 unknown function unknown function -1 48249 48518
YP_009199557.1 NC_028810_p43 hypothetical protein phrog_1971 unknown function unknown function -1 32110 32397
YP_009199522.1 NC_028810_p8 hypothetical protein phrog_747 unknown function unknown function 1 3967 4224
YP_009199588.1 NC_028810_p74 hypothetical protein phrog_4604 unknown function unknown function -1 45759 46220
YP_009199527.1 NC_028810_p13 portal protein phrog_104 portal protein head and packaging 1 8822 10264
YP_009199604.1 NC_028810_p90 hypothetical protein phrog_2985 unknown function unknown function -1 50945 51100
YP_009199596.1 NC_028810_p82 hypothetical protein phrog_1155 unknown function unknown function -1 48715 48903
YP_009199606.1 NC_028810_p92 hypothetical protein phrog_2212 unknown function unknown function -1 51578 51661
YP_009199587.1 NC_028810_p73 hypothetical protein phrog_4285 transposase integration and excision -1 44711 45418
YP_009199575.1 NC_028810_p61 hypothetical protein phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40603 41112
YP_009199528.1 NC_028810_p14 capsid maturation protease phrog_193 head maturation protease head and packaging 1 10261 11142
YP_009199568.1 NC_028810_p54 DNA primase phrog_474 phosphofructokinase other -1 37705 38103
YP_009199603.1 NC_028810_p89 hypothetical protein phrog_3414 unknown function unknown function -1 50392 50676
YP_009199523.1 NC_028810_p9 lysin A phrog_317 endolysin lysis 1 4224 5657
YP_009199540.1 NC_028810_p26 minor tail protein phrog_106 minor tail protein tail 1 19270 21327
YP_009199539.1 NC_028810_p25 tapemeasure phrog_305 tail length tape measure protein tail 1 16775 19246
YP_009199597.1 NC_028810_p83 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 48903 49070
YP_009199521.1 NC_028810_p7 hypothetical protein phrog_1718 tail protein tail 1 3699 3959
YP_009199595.1 NC_028810_p81 hypothetical protein phrog_1387 unknown function unknown function -1 48515 48718
YP_009199560.1 NC_028810_p46 hypothetical protein phrog_6173 unknown function unknown function -1 34630 34884
YP_009199599.1 NC_028810_p85 hypothetical protein phrog_9318 unknown function unknown function -1 49189 49359
YP_009199550.1 NC_028810_p36 hypothetical protein phrog_754 minor tail protein tail 1 28440 29189
YP_009199577.1 NC_028810_p63 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41182 41448
YP_009199602.1 NC_028810_p88 hypothetical protein phrog_18281 unknown function unknown function -1 50113 50325
YP_009199593.1 NC_028810_p79 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 47953 48252
YP_009199548.1 NC_028810_p34 hypothetical protein phrog_644 unknown function unknown function 1 27922 28242
YP_009199530.1 NC_028810_p16 capsid protein phrog_10 major head protein head and packaging 1 11723 12727
YP_009199601.1 NC_028810_p87 hypothetical protein phrog_4631 unknown function unknown function -1 49524 49841
YP_009199559.1 NC_028810_p45 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 32778 34607
YP_009199555.1 NC_028810_p41 hypothetical protein phrog_2035 unknown function unknown function -1 31851 32021
YP_009199569.1 NC_028810_p55 hypothetical protein phrog_8843 unknown function unknown function -1 38100 38321
YP_009199517.1 NC_028810_p3 hypothetical protein phrog_226 minor tail protein tail 1 1078 1518
YP_009199533.1 NC_028810_p19 hypothetical protein phrog_320 head closure Hc1 connector 1 13773 14135
YP_009199558.1 NC_028810_p44 hypothetical protein phrog_383 unknown function unknown function -1 32394 32750
YP_009199547.1 NC_028810_p33 hypothetical protein phrog_382 minor tail protein with lysin activity tail 1 26351 27829
YP_009199541.1 NC_028810_p27 hypothetical protein phrog_1543 minor tail protein tail 1 21324 21506
YP_009199536.1 NC_028810_p22 major tail subunit phrog_117 major tail protein tail 1 14989 15840
YP_009199534.1 NC_028810_p20 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 14135 14530
YP_009199519.1 NC_028810_p5 hypothetical protein phrog_1197 tail protein tail 1 1904 2974
YP_009199598.1 NC_028810_p84 hypothetical protein phrog_2093 unknown function unknown function -1 49067 49192
YP_009199525.1 NC_028810_p11 HNH endonuclease phrog_8660 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6635 7153
YP_009199600.1 NC_028810_p86 hypothetical protein phrog_932 unknown function unknown function -1 49378 49527
YP_009199573.1 NC_028810_p59 hypothetical protein phrog_397 unknown function unknown function -1 39334 39468
YP_009199518.1 NC_028810_p4 hypothetical protein phrog_7087 unknown function unknown function 1 1597 1887
YP_009199552.1 NC_028810_p38 hypothetical protein phrog_411 unknown function unknown function 1 29521 29805
YP_009199579.1 NC_028810_p65 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41624 42445
YP_009199564.1 NC_028810_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 35812 36627
YP_009199537.1 NC_028810_p23 tail scaffold protein phrog_393 tail assembly chaperone tail 1 15862 16763
YP_009199571.1 NC_028810_p57 hypothetical protein phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 38685 39200
YP_009199524.1 NC_028810_p10 lysin B phrog_102 endolysin lysis 1 5647 6615
YP_009199544.1 NC_028810_p30 hypothetical protein phrog_981 minor tail protein tail 1 23789 24136
YP_009199565.1 NC_028810_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36620 36760
YP_009199529.1 NC_028810_p15 scaffold protein phrog_233 head scaffolding protein head and packaging 1 11201 11713
YP_009199589.1 NC_028810_p75 hypothetical protein phrog_2730 unknown function unknown function -1 46258 46425
YP_009199605.1 NC_028810_p91 hypothetical protein phrog_10288 unknown function unknown function -1 51310 51549
YP_009199590.1 NC_028810_p76 hypothetical protein phrog_1584 unknown function unknown function -1 46428 46745
YP_009199538.1 NC_028810_p24 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15862 16341
YP_009199546.1 NC_028810_p32 minor tail subunit phrog_346 minor tail protein tail 1 24505 26358
YP_009199578.1 NC_028810_p64 hypothetical protein phrog_6513 unknown function unknown function -1 41433 41624