| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028810 |
Definition |
Mycobacterium phage Rufus, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
52357 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
63.85 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199576.1 | NC_028810_p62 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41099 | 41185 |
| YP_009199531.1 | NC_028810_p17 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12806 | 13324 |
| YP_009199551.1 | NC_028810_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 29296 | 29400 |
| YP_009199543.1 | NC_028810_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23346 | 23792 |
| YP_009199562.1 | NC_028810_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35142 | 35636 |
| YP_009199553.1 | NC_028810_p39 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 29957 | 31459 |
| YP_009199582.1 | NC_028810_p68 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 42737 | 43030 |
| YP_009199545.1 | NC_028810_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24133 | 24480 |
| YP_009199526.1 | NC_028810_p12 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 7137 | 8825 |
| YP_009199515.1 | NC_028810_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 598 | 750 |
| YP_009199570.1 | NC_028810_p56 | DNA topoisomerase primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38318 | 38896 |
| YP_009199591.1 | NC_028810_p77 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 46742 | 47137 |
| YP_009199532.1 | NC_028810_p18 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13324 | 13773 |
| YP_009199574.1 | NC_028810_p60 | hypothetical protein | phrog_67 | DNA methyltransferase | other | -1 | 39494 | 40606 |
| YP_009199554.1 | NC_028810_p40 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31582 | 31854 |
| YP_009199561.1 | NC_028810_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34881 | 35111 |
| YP_009199583.1 | NC_028810_p69 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43027 | 43347 |
| YP_009199516.1 | NC_028810_p2 | hypothetical protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 747 | 1043 |
| YP_009199535.1 | NC_028810_p21 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14534 | 14980 |
| YP_009199586.1 | NC_028810_p72 | hypothetical protein | phrog_8167 | unknown function | unknown function | -1 | 44360 | 44695 |
| YP_009199581.1 | NC_028810_p67 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42618 | 42740 |
| YP_009199607.1 | NC_028810_p93 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 51771 | 51974 |
| YP_009199592.1 | NC_028810_p78 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 47179 | 47691 |
| YP_009199572.1 | NC_028810_p58 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 39179 | 39337 |
| YP_009199580.1 | NC_028810_p66 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42445 | 42621 |
| YP_009199549.1 | NC_028810_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28252 | 28443 |
| YP_009199556.1 | NC_028810_p42 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32018 | 32113 |
| YP_009199520.1 | NC_028810_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 2984 | 3685 |
| YP_009199542.1 | NC_028810_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21506 | 23308 |
| YP_009199566.1 | NC_028810_p52 | RDF/NrdC protein | phrog_221 | metallo-phosphoesterase | other | -1 | 36765 | 37532 |
| YP_009199584.1 | NC_028810_p70 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43351 | 43533 |
| YP_009199567.1 | NC_028810_p53 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37529 | 37708 |
| YP_009199563.1 | NC_028810_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35633 | 35815 |
| YP_009199585.1 | NC_028810_p71 | RecB | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43560 | 44360 |
| YP_009199594.1 | NC_028810_p80 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 48249 | 48518 |
| YP_009199557.1 | NC_028810_p43 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32110 | 32397 |
| YP_009199522.1 | NC_028810_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 3967 | 4224 |
| YP_009199588.1 | NC_028810_p74 | hypothetical protein | phrog_4604 | unknown function | unknown function | -1 | 45759 | 46220 |
| YP_009199527.1 | NC_028810_p13 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8822 | 10264 |
| YP_009199604.1 | NC_028810_p90 | hypothetical protein | phrog_2985 | unknown function | unknown function | -1 | 50945 | 51100 |
| YP_009199596.1 | NC_028810_p82 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 48715 | 48903 |
| YP_009199606.1 | NC_028810_p92 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 51578 | 51661 |
| YP_009199587.1 | NC_028810_p73 | hypothetical protein | phrog_4285 | transposase | integration and excision | -1 | 44711 | 45418 |
| YP_009199575.1 | NC_028810_p61 | hypothetical protein | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40603 | 41112 |
| YP_009199528.1 | NC_028810_p14 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 10261 | 11142 |
| YP_009199568.1 | NC_028810_p54 | DNA primase | phrog_474 | phosphofructokinase | other | -1 | 37705 | 38103 |
| YP_009199603.1 | NC_028810_p89 | hypothetical protein | phrog_3414 | unknown function | unknown function | -1 | 50392 | 50676 |
| YP_009199523.1 | NC_028810_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4224 | 5657 |
| YP_009199540.1 | NC_028810_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19270 | 21327 |
| YP_009199539.1 | NC_028810_p25 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16775 | 19246 |
| YP_009199597.1 | NC_028810_p83 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 48903 | 49070 |
| YP_009199521.1 | NC_028810_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3699 | 3959 |
| YP_009199595.1 | NC_028810_p81 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 48515 | 48718 |
| YP_009199560.1 | NC_028810_p46 | hypothetical protein | phrog_6173 | unknown function | unknown function | -1 | 34630 | 34884 |
| YP_009199599.1 | NC_028810_p85 | hypothetical protein | phrog_9318 | unknown function | unknown function | -1 | 49189 | 49359 |
| YP_009199550.1 | NC_028810_p36 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28440 | 29189 |
| YP_009199577.1 | NC_028810_p63 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41182 | 41448 |
| YP_009199602.1 | NC_028810_p88 | hypothetical protein | phrog_18281 | unknown function | unknown function | -1 | 50113 | 50325 |
| YP_009199593.1 | NC_028810_p79 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47953 | 48252 |
| YP_009199548.1 | NC_028810_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27922 | 28242 |
| YP_009199530.1 | NC_028810_p16 | capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11723 | 12727 |
| YP_009199601.1 | NC_028810_p87 | hypothetical protein | phrog_4631 | unknown function | unknown function | -1 | 49524 | 49841 |
| YP_009199559.1 | NC_028810_p45 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32778 | 34607 |
| YP_009199555.1 | NC_028810_p41 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31851 | 32021 |
| YP_009199569.1 | NC_028810_p55 | hypothetical protein | phrog_8843 | unknown function | unknown function | -1 | 38100 | 38321 |
| YP_009199517.1 | NC_028810_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1078 | 1518 |
| YP_009199533.1 | NC_028810_p19 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13773 | 14135 |
| YP_009199558.1 | NC_028810_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32394 | 32750 |
| YP_009199547.1 | NC_028810_p33 | hypothetical protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26351 | 27829 |
| YP_009199541.1 | NC_028810_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21324 | 21506 |
| YP_009199536.1 | NC_028810_p22 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 14989 | 15840 |
| YP_009199534.1 | NC_028810_p20 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14135 | 14530 |
| YP_009199519.1 | NC_028810_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 1904 | 2974 |
| YP_009199598.1 | NC_028810_p84 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 49067 | 49192 |
| YP_009199525.1 | NC_028810_p11 | HNH endonuclease | phrog_8660 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6635 | 7153 |
| YP_009199600.1 | NC_028810_p86 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 49378 | 49527 |
| YP_009199573.1 | NC_028810_p59 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39334 | 39468 |
| YP_009199518.1 | NC_028810_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1597 | 1887 |
| YP_009199552.1 | NC_028810_p38 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29521 | 29805 |
| YP_009199579.1 | NC_028810_p65 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41624 | 42445 |
| YP_009199564.1 | NC_028810_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35812 | 36627 |
| YP_009199537.1 | NC_028810_p23 | tail scaffold protein | phrog_393 | tail assembly chaperone | tail | 1 | 15862 | 16763 |
| YP_009199571.1 | NC_028810_p57 | hypothetical protein | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38685 | 39200 |
| YP_009199524.1 | NC_028810_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5647 | 6615 |
| YP_009199544.1 | NC_028810_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23789 | 24136 |
| YP_009199565.1 | NC_028810_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36620 | 36760 |
| YP_009199529.1 | NC_028810_p15 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 11201 | 11713 |
| YP_009199589.1 | NC_028810_p75 | hypothetical protein | phrog_2730 | unknown function | unknown function | -1 | 46258 | 46425 |
| YP_009199605.1 | NC_028810_p91 | hypothetical protein | phrog_10288 | unknown function | unknown function | -1 | 51310 | 51549 |
| YP_009199590.1 | NC_028810_p76 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 46428 | 46745 |
| YP_009199538.1 | NC_028810_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15862 | 16341 |
| YP_009199546.1 | NC_028810_p32 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 24505 | 26358 |
| YP_009199578.1 | NC_028810_p64 | hypothetical protein | phrog_6513 | unknown function | unknown function | -1 | 41433 | 41624 |