| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028812 |
Definition |
Proteus phage pPM_01, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
58546 |
Host Name |
Proteus mirabilis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
70 |
%GC |
46.86 |
Number of singletons |
16 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199631.1 | NC_028812_p18 | hypothetical protein | phrog_7734 | unknown function | unknown function | 1 | 11722 | 12042 |
| YP_009199649.1 | NC_028812_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23059 | 24000 |
| YP_009199650.1 | NC_028812_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24224 | 24382 |
| YP_009199616.1 | NC_028812_p3 | hypothetical protein | phrog_7033 | unknown function | unknown function | -1 | 3602 | 4180 |
| YP_009199680.1 | NC_028812_p67 | hypothetical protein | phrog_7721 | unknown function | unknown function | -1 | 56689 | 57171 |
| YP_009199630.1 | NC_028812_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11405 | 11716 |
| YP_009199666.1 | NC_028812_p53 | hypothetical protein | phrog_4858 | unknown function | unknown function | -1 | 42670 | 43023 |
| YP_009199672.1 | NC_028812_p59 | head-to-tail joining protein | phrog_75 | head-tail adaptor Ad1 | connector | -1 | 47861 | 48136 |
| YP_009199673.1 | NC_028812_p60 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | -1 | 48149 | 50215 |
| YP_009199670.1 | NC_028812_p57 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | -1 | 44944 | 46221 |
| YP_009199635.1 | NC_028812_p22 | hypothetical protein | phrog_6886 | unknown function | unknown function | 1 | 13728 | 14546 |
| YP_009199651.1 | NC_028812_p38 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 24697 | 25713 |
| YP_009199667.1 | NC_028812_p54 | hypothetical protein | phrog_38433 | unknown function | unknown function | -1 | 43023 | 43370 |
| YP_009199638.1 | NC_028812_p25 | hypothetical protein | phrog_34189 | unknown function | unknown function | 1 | 15746 | 16378 |
| YP_009199628.1 | NC_028812_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10565 | 10693 |
| YP_009199663.1 | NC_028812_p50 | structural protein | phrog_807 | major tail protein with Ig-like domain | tail | -1 | 40357 | 41544 |
| YP_009199671.1 | NC_028812_p58 | lambda family portal protein | phrog_21 | portal protein | head and packaging | -1 | 46218 | 47861 |
| YP_009199629.1 | NC_028812_p16 | hypothetical protein | phrog_6647 | unknown function | unknown function | 1 | 10892 | 11323 |
| YP_009199633.1 | NC_028812_p20 | recombinase RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | 1 | 12370 | 13458 |
| YP_009199676.1 | NC_028812_p63 | VRR-NUC domain-containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 52278 | 52565 |
| YP_009199665.1 | NC_028812_p52 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | -1 | 42050 | 42667 |
| YP_009199653.1 | NC_028812_p40 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 26720 | 27640 |
| YP_009199624.1 | NC_028812_p11 | hypothetical protein | phrog_22351 | unknown function | unknown function | -1 | 8604 | 9173 |
| YP_009199641.1 | NC_028812_p28 | hypothetical protein | phrog_35002 | unknown function | unknown function | 1 | 17417 | 17950 |
| YP_009199648.1 | NC_028812_p35 | hypothetical protein | phrog_7226 | unknown function | unknown function | -1 | 21070 | 22908 |
| YP_009199642.1 | NC_028812_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17943 | 18194 |
| YP_009199614.1 | NC_028812_p1 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 154 | 1920 |
| YP_009199682.1 | NC_028812_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 57404 | 57517 |
| YP_009199654.1 | NC_028812_p41 | tail fiber protein | phrog_7049 | tail fiber protein | tail | -1 | 27640 | 28383 |
| YP_009199620.1 | NC_028812_p7 | hypothetical protein | phrog_37849 | unknown function | unknown function | -1 | 6098 | 6319 |
| YP_009199637.1 | NC_028812_p24 | hypothetical protein | phrog_36634 | unknown function | unknown function | 1 | 15307 | 15753 |
| YP_009199659.1 | NC_028812_p46 | tail assembly protein | phrog_1082 | tail assembly protein | tail | -1 | 33494 | 35182 |
| YP_009199634.1 | NC_028812_p21 | hypothetical protein | phrog_7200 | unknown function | unknown function | 1 | 13461 | 13661 |
| YP_009199677.1 | NC_028812_p64 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 52565 | 54598 |
| YP_009199639.1 | NC_028812_p26 | DNA methyltransferase | phrog_111 | DNA methyltransferase | other | 1 | 16378 | 17115 |
| YP_009199621.1 | NC_028812_p8 | hypothetical protein | phrog_1384 | Mom-like DNA modification protein | other | -1 | 6303 | 6953 |
| YP_009199657.1 | NC_028812_p44 | tail assembly protein 1 | phrog_1180 | tail assembly chaperone | tail | -1 | 32409 | 32645 |
| YP_009199656.1 | NC_028812_p43 | tail assembly protein | phrog_1196 | tail assembly chaperone | tail | -1 | 32200 | 32409 |
| YP_009199652.1 | NC_028812_p39 | hypothetical protein | phrog_2448 | unknown function | unknown function | -1 | 25726 | 26706 |
| YP_009199625.1 | NC_028812_p12 | hypothetical protein | phrog_18953 | tail protein | tail | -1 | 9662 | 9850 |
| YP_009199618.1 | NC_028812_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4403 | 5092 |
| YP_009199647.1 | NC_028812_p34 | lysis protein B | phrog_7686 | Rz-like spanin | lysis | -1 | 20745 | 21059 |
| YP_009199662.1 | NC_028812_p49 | hypothetical protein | phrog_5260 | tail protein | tail | -1 | 39766 | 40218 |
| YP_009199622.1 | NC_028812_p9 | hypothetical protein | phrog_38602 | unknown function | unknown function | -1 | 6957 | 7697 |
| YP_009199626.1 | NC_028812_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9840 | 10082 |
| YP_009199617.1 | NC_028812_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4177 | 4389 |
| YP_009199632.1 | NC_028812_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12036 | 12383 |
| YP_009199675.1 | NC_028812_p62 | SNF2 domain-containing protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 50795 | 52318 |
| YP_009199645.1 | NC_028812_p32 | hypothetical protein | phrog_1026 | Rz-like spanin | lysis | -1 | 19776 | 20030 |
| YP_009199660.1 | NC_028812_p47 | tape measure protein | phrog_2335 | tail length tape measure protein | tail | -1 | 35188 | 39525 |
| YP_009199679.1 | NC_028812_p66 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 55300 | 56628 |
| YP_009199615.1 | NC_028812_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 3366 | 3590 |
| YP_009199683.1 | NC_028812_p70 | hypothetical protein | phrog_7401 | unknown function | unknown function | 1 | 57524 | 57808 |
| YP_009199627.1 | NC_028812_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10094 | 10420 |
| YP_009199655.1 | NC_028812_p42 | tail assembly protein | phrog_6284 | tail protein | tail | -1 | 28383 | 32207 |
| YP_009199661.1 | NC_028812_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 39515 | 39673 |
| YP_009199658.1 | NC_028812_p45 | tail assembly protein | phrog_778 | tail assembly protein | tail | -1 | 32658 | 33473 |
| YP_009199646.1 | NC_028812_p33 | lysis protein A | phrog_873 | endolysin | head and packaging | -1 | 20030 | 20734 |
| YP_009199640.1 | NC_028812_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17142 | 17267 |
| YP_009199668.1 | NC_028812_p55 | capsid protein E | phrog_29 | major head protein | head and packaging | -1 | 43434 | 44501 |
| YP_009199636.1 | NC_028812_p23 | hypothetical protein | phrog_37274 | unknown function | unknown function | 1 | 14543 | 15310 |
| YP_009199669.1 | NC_028812_p56 | decorator protein D | phrog_49 | head decoration | head and packaging | -1 | 44514 | 44930 |
| YP_009199619.1 | NC_028812_p6 | hypothetical protein | phrog_37646 | unknown function | unknown function | -1 | 5145 | 5936 |
| YP_009199623.1 | NC_028812_p10 | hypothetical protein | singleton | unknown function | unknown function | -1 | 8246 | 8611 |
| YP_009199664.1 | NC_028812_p51 | hypothetical protein | phrog_5078 | tail terminator | connector | -1 | 41548 | 42060 |
| YP_009199681.1 | NC_028812_p68 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57201 | 57344 |
| YP_009199674.1 | NC_028812_p61 | terminase small subunit | phrog_141 | terminase small subunit | head and packaging | -1 | 50208 | 50792 |
| YP_009199678.1 | NC_028812_p65 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 54663 | 55268 |
| YP_009199643.1 | NC_028812_p30 | hypothetical protein | phrog_30326 | unknown function | unknown function | 1 | 18196 | 19065 |
| YP_009199644.1 | NC_028812_p31 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 19062 | 19526 |