Genomic map of Mycobacterium phage Seagreen (NC_028813)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028813
Definition
Mycobacterium phage Seagreen, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus.
DB of origin
REFSEQ
Length
57766
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
105
%GC
61.83
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009199719.1 NC_028813_p36 DnaQ-like exonuclease phrog_403 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 29502 30323
YP_009199783.1 NC_028813_p100 hypothetical protein phrog_1385 unknown function unknown function 1 54532 54774
YP_009199694.1 NC_028813_p11 head-to-tail connector phrog_813 head-tail adaptor connector 1 6948 7352
YP_009199788.1 NC_028813_p105 glycosyltransferase phrog_854 glucosyltransferase moron, auxiliary metabolic gene and host takeover 1 57063 57674
YP_009199696.1 NC_028813_p13 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 8392 9328
YP_009199746.1 NC_028813_p63 hypothetical protein phrog_3290 single strand annealing protein DNA, RNA and nucleotide metabolism 1 41028 41606
YP_009199759.1 NC_028813_p76 hypothetical protein phrog_2447 replication initiation protein DNA, RNA and nucleotide metabolism 1 47662 48513
YP_009199727.1 NC_028813_p44 integrase phrog_1 integrase integration and excision 1 32175 33485
YP_009199713.1 NC_028813_p30 hypothetical protein phrog_747 unknown function unknown function 1 26121 26354
YP_009199704.1 NC_028813_p21 hypothetical protein phrog_2106 minor tail protein tail 1 21664 22824
YP_009199779.1 NC_028813_p96 hypothetical protein phrog_1869 unknown function unknown function 1 53545 53712
YP_009199699.1 NC_028813_p16 minor tail protein phrog_106 minor tail protein tail 1 12871 14580
YP_009199715.1 NC_028813_p32 lysin B phrog_102 endolysin lysis 1 27637 28638
YP_009199765.1 NC_028813_p82 hypothetical protein phrog_1900 mobile element MPME moron, auxiliary metabolic gene and host takeover 1 49771 50103
YP_009199684.1 NC_028813_p1 hypothetical protein phrog_28756 unknown function unknown function 1 11 340
YP_009199781.1 NC_028813_p98 hypothetical protein phrog_1694 unknown function unknown function 1 53928 54125
YP_009199762.1 NC_028813_p79 hypothetical protein phrog_1943 unknown function unknown function 1 48958 49152
YP_009199778.1 NC_028813_p95 hypothetical protein phrog_2474 MerR-like transcriptional regulator transcription regulation 1 53324 53548
YP_009199723.1 NC_028813_p40 hypothetical protein phrog_22001 unknown function unknown function -1 31073 31258
YP_009199716.1 NC_028813_p33 holin phrog_443 holin lysis 1 28654 28887
YP_009199780.1 NC_028813_p97 hypothetical protein phrog_6481 unknown function unknown function 1 53719 53928
YP_009199774.1 NC_028813_p91 hypothetical protein phrog_2278 unknown function unknown function 1 51890 52081
YP_009199745.1 NC_028813_p62 hypothetical protein phrog_2632 unknown function unknown function 1 40771 41031
YP_009199740.1 NC_028813_p57 WhiB family transcription factor phrog_1333 unknown function unknown function 1 38560 39054
YP_009199785.1 NC_028813_p102 glycosyltransferase phrog_1579 glycosyltransferase moron, auxiliary metabolic gene and host takeover 1 54945 56381
YP_009199688.1 NC_028813_p5 capsid maturation protease phrog_193 head maturation protease head and packaging 1 3605 4330
YP_009199737.1 NC_028813_p54 NKF protein phrog_8015 unknown function unknown function 1 37577 37858
YP_009199758.1 NC_028813_p75 hypothetical protein phrog_2451 unknown function unknown function 1 47524 47658
YP_009199720.1 NC_028813_p37 hypothetical protein phrog_1791 unknown function unknown function 1 30398 30631
YP_009199743.1 NC_028813_p60 WhiB family transcription regulator phrog_1333 unknown function unknown function 1 39745 40392
YP_009199772.1 NC_028813_p89 hypothetical protein phrog_1545 unknown function unknown function 1 51527 51667
YP_009199755.1 NC_028813_p72 DNA methylase phrog_67 DNA methyltransferase other 1 45196 46428
YP_009199775.1 NC_028813_p92 hypothetical protein phrog_22980 unknown function unknown function 1 52069 52311
YP_009199787.1 NC_028813_p104 hypothetical protein phrog_1693 unknown function unknown function 1 56854 57066
YP_009199722.1 NC_028813_p39 hypothetical protein phrog_5648 unknown function unknown function -1 30840 31076
YP_009199782.1 NC_028813_p99 hypothetical protein phrog_1186 unknown function unknown function 1 54122 54535
YP_009199738.1 NC_028813_p55 NKF protein phrog_1849 unknown function unknown function 1 37934 38215
YP_009199735.1 NC_028813_p52 DNA replication protein phrog_1816 unknown function unknown function 1 36781 36969
YP_009199751.1 NC_028813_p68 DNA methylase phrog_116 DNA methyltransferase other 1 42620 44155
YP_009199707.1 NC_028813_p24 hypothetical protein phrog_2012 minor tail protein tail 1 23474 24112
YP_009199739.1 NC_028813_p56 NKF protein phrog_658 unknown function unknown function 1 38212 38559
YP_009199695.1 NC_028813_p12 major tail protein phrog_476 major tail protein tail 1 7462 8271
YP_009199750.1 NC_028813_p67 hypothetical protein phrog_3821 unknown function unknown function 1 42273 42623
YP_009199730.1 NC_028813_p47 CRO protein phrog_2104 unknown function unknown function 1 34933 35229
YP_009199760.1 NC_028813_p77 hypothetical protein phrog_2080 unknown function unknown function 1 48510 48773
YP_009199764.1 NC_028813_p81 hypothetical protein phrog_722 unknown function unknown function 1 49474 49662
YP_009199736.1 NC_028813_p53 NKF protein phrog_1797 unknown function unknown function 1 36966 37559
YP_009199685.1 NC_028813_p2 terminase small subunit phrog_4479 terminase small subunit head and packaging 1 445 699
YP_009199697.1 NC_028813_p14 tail assembly chaperone phrog_621 tail assembly chaperone tail 1 8392 8943
YP_009199732.1 NC_028813_p49 hypothetical protein phrog_2025 unknown function unknown function 1 36283 36501
YP_009199771.1 NC_028813_p88 hypothetical protein phrog_1091 unknown function unknown function 1 51351 51530
YP_009199766.1 NC_028813_p83 hypothetical protein phrog_7842 unknown function unknown function 1 50090 50263
YP_009199717.1 NC_028813_p34 hypothetical protein phrog_404 minor tail protein tail 1 28884 29258
YP_009199742.1 NC_028813_p59 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39395 39748
YP_009199749.1 NC_028813_p66 hypothetical protein phrog_1311 unknown function unknown function 1 42125 42280
YP_009199741.1 NC_028813_p58 HTH DNA binding protein phrog_664 DNA binding protein DNA, RNA and nucleotide metabolism 1 39051 39398
YP_009199706.1 NC_028813_p23 hypothetical protein phrog_2005 minor tail protein tail 1 23206 23460
YP_009199686.1 NC_028813_p3 terminase large subunit phrog_2 terminase large subunit head and packaging 1 671 2158
YP_009199756.1 NC_028813_p73 DNA endonuclease phrog_1271 HNH endonuclease DNA, RNA and nucleotide metabolism -1 46364 47161
YP_009199702.1 NC_028813_p19 minor tail protein phrog_346 minor tail protein tail 1 17241 19778
YP_009199770.1 NC_028813_p87 hypothetical protein phrog_24916 unknown function unknown function 1 51022 51354
YP_009199776.1 NC_028813_p93 hypothetical protein phrog_2247 unknown function unknown function 1 52298 52573
YP_009199693.1 NC_028813_p10 head-to-tail connector phrog_1929 head-tail connector protein connector 1 6662 6958
YP_009199709.1 NC_028813_p26 hypothetical protein phrog_686 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 25093 25284
YP_009199731.1 NC_028813_p48 DNA binding protein phrog_130 anti-repressor Ant transcription regulation 1 35285 36286
YP_009199724.1 NC_028813_p41 HTH DNA binding protein phrog_5497 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 31261 31458
YP_009199687.1 NC_028813_p4 portal protein phrog_104 portal protein head and packaging 1 2200 3621
YP_009199726.1 NC_028813_p43 hypothetical protein singleton unknown function unknown function 1 31620 31952
YP_009199777.1 NC_028813_p94 hypothetical protein phrog_1467 unknown function unknown function 1 52570 53214
YP_009199757.1 NC_028813_p74 DNA methylase domain protein phrog_3008 DNA methyltransferase other 1 47273 47527
YP_009199712.1 NC_028813_p29 hypothetical protein phrog_1172 unknown function unknown function 1 25880 26047
YP_009199691.1 NC_028813_p8 head-to-tail connector phrog_137 head-tail adaptor Ad1 connector 1 5928 6299
YP_009199733.1 NC_028813_p50 NKF protein phrog_5563 unknown function unknown function 1 36498 36590
YP_009199728.1 NC_028813_p45 hypothetical protein phrog_1948 unknown function unknown function -1 33548 33994
YP_009199689.1 NC_028813_p6 scaffolding protein phrog_4638 head scaffolding protein head and packaging 1 4409 4945
YP_009199744.1 NC_028813_p61 hypothetical protein phrog_1834 unknown function unknown function 1 40544 40774
YP_009199710.1 NC_028813_p27 hypothetical protein phrog_411 unknown function unknown function 1 25434 25730
YP_009199754.1 NC_028813_p71 hypothetical protein phrog_8611 unknown function unknown function -1 44662 44979
YP_009199729.1 NC_028813_p46 immunity repressor phrog_2838 transcriptional repressor transcription regulation -1 34257 34859
YP_009199721.1 NC_028813_p38 hypothetical protein phrog_1839 unknown function unknown function 1 30624 30716
YP_009199690.1 NC_028813_p7 major capsid protein phrog_10 major head protein head and packaging 1 5008 5916
YP_009199718.1 NC_028813_p35 hypothetical protein phrog_2004 unknown function unknown function 1 29282 29515
YP_009199700.1 NC_028813_p17 minor tail protein phrog_110 minor tail protein tail 1 14650 16359
YP_009199761.1 NC_028813_p78 hypothetical protein phrog_7196 unknown function unknown function 1 48770 48961
YP_009199768.1 NC_028813_p85 hypothetical protein phrog_2939 unknown function unknown function 1 50625 50837
YP_009199711.1 NC_028813_p28 hypothetical protein phrog_932 unknown function unknown function 1 25737 25883
YP_009199734.1 NC_028813_p51 terminase small subunit phrog_66 excisionase and transcriptional regulator integration and excision 1 36587 36784
YP_009199767.1 NC_028813_p84 hypothetical protein phrog_647 unknown function unknown function 1 50260 50628
YP_009199705.1 NC_028813_p22 hypothetical protein phrog_240 head protein head and packaging 1 22842 23183
YP_009199748.1 NC_028813_p65 hypothetical protein phrog_2070 unknown function unknown function 1 41962 42147
YP_009199692.1 NC_028813_p9 head-to-tail connector phrog_763 head-tail adaptor connector 1 6296 6625
YP_009199714.1 NC_028813_p31 lysin A phrog_700 endolysin lysis 1 26351 27637
YP_009199773.1 NC_028813_p90 hypothetical protein phrog_5186 unknown function unknown function 1 51664 51837
YP_009199763.1 NC_028813_p80 hypothetical protein phrog_647 unknown function unknown function 1 49149 49481
YP_009199701.1 NC_028813_p18 minor tail protein phrog_732 minor tail protein tail 1 16414 17244
YP_009199725.1 NC_028813_p42 hypothetical protein phrog_7147 unknown function unknown function -1 31458 31778
YP_009199708.1 NC_028813_p25 hypothetical protein phrog_754 minor tail protein tail 1 24109 25089
YP_009199703.1 NC_028813_p20 D-ala-D-ala-decarboxylase phrog_382 minor tail protein with lysin activity tail 1 19775 21661
YP_009199747.1 NC_028813_p64 HNH endonuclease domain protein phrog_740 HNH endonuclease DNA, RNA and nucleotide metabolism 1 41603 41965
YP_009199784.1 NC_028813_p101 hypothetical protein phrog_2057 unknown function unknown function 1 54767 54928
YP_009199769.1 NC_028813_p86 hypothetical protein phrog_1901 unknown function unknown function 1 50834 51025
YP_009199753.1 NC_028813_p70 hypothetical protein phrog_8485 unknown function unknown function -1 44278 44655
YP_009199698.1 NC_028813_p15 tape measure protein phrog_1942 tail length tape measure protein tail 1 9346 12870
YP_009199752.1 NC_028813_p69 DNA binding protein phrog_6506 Arc-like repressor transcription regulation -1 44124 44285
YP_009199786.1 NC_028813_p103 Ser/Thr kinase phrog_3297 kinase other 1 56384 56857