| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028813 |
Definition |
Mycobacterium phage Seagreen, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
57766 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
105 |
%GC |
61.83 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199719.1 | NC_028813_p36 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 29502 | 30323 |
| YP_009199783.1 | NC_028813_p100 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 54532 | 54774 |
| YP_009199694.1 | NC_028813_p11 | head-to-tail connector | phrog_813 | head-tail adaptor | connector | 1 | 6948 | 7352 |
| YP_009199788.1 | NC_028813_p105 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57063 | 57674 |
| YP_009199696.1 | NC_028813_p13 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8392 | 9328 |
| YP_009199746.1 | NC_028813_p63 | hypothetical protein | phrog_3290 | single strand annealing protein | DNA, RNA and nucleotide metabolism | 1 | 41028 | 41606 |
| YP_009199759.1 | NC_028813_p76 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 47662 | 48513 |
| YP_009199727.1 | NC_028813_p44 | integrase | phrog_1 | integrase | integration and excision | 1 | 32175 | 33485 |
| YP_009199713.1 | NC_028813_p30 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 26121 | 26354 |
| YP_009199704.1 | NC_028813_p21 | hypothetical protein | phrog_2106 | minor tail protein | tail | 1 | 21664 | 22824 |
| YP_009199779.1 | NC_028813_p96 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 53545 | 53712 |
| YP_009199699.1 | NC_028813_p16 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 12871 | 14580 |
| YP_009199715.1 | NC_028813_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 27637 | 28638 |
| YP_009199765.1 | NC_028813_p82 | hypothetical protein | phrog_1900 | mobile element MPME | moron, auxiliary metabolic gene and host takeover | 1 | 49771 | 50103 |
| YP_009199684.1 | NC_028813_p1 | hypothetical protein | phrog_28756 | unknown function | unknown function | 1 | 11 | 340 |
| YP_009199781.1 | NC_028813_p98 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 53928 | 54125 |
| YP_009199762.1 | NC_028813_p79 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 48958 | 49152 |
| YP_009199778.1 | NC_028813_p95 | hypothetical protein | phrog_2474 | MerR-like transcriptional regulator | transcription regulation | 1 | 53324 | 53548 |
| YP_009199723.1 | NC_028813_p40 | hypothetical protein | phrog_22001 | unknown function | unknown function | -1 | 31073 | 31258 |
| YP_009199716.1 | NC_028813_p33 | holin | phrog_443 | holin | lysis | 1 | 28654 | 28887 |
| YP_009199780.1 | NC_028813_p97 | hypothetical protein | phrog_6481 | unknown function | unknown function | 1 | 53719 | 53928 |
| YP_009199774.1 | NC_028813_p91 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 51890 | 52081 |
| YP_009199745.1 | NC_028813_p62 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40771 | 41031 |
| YP_009199740.1 | NC_028813_p57 | WhiB family transcription factor | phrog_1333 | unknown function | unknown function | 1 | 38560 | 39054 |
| YP_009199785.1 | NC_028813_p102 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 54945 | 56381 |
| YP_009199688.1 | NC_028813_p5 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 3605 | 4330 |
| YP_009199737.1 | NC_028813_p54 | NKF protein | phrog_8015 | unknown function | unknown function | 1 | 37577 | 37858 |
| YP_009199758.1 | NC_028813_p75 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 47524 | 47658 |
| YP_009199720.1 | NC_028813_p37 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 30398 | 30631 |
| YP_009199743.1 | NC_028813_p60 | WhiB family transcription regulator | phrog_1333 | unknown function | unknown function | 1 | 39745 | 40392 |
| YP_009199772.1 | NC_028813_p89 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 51527 | 51667 |
| YP_009199755.1 | NC_028813_p72 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 45196 | 46428 |
| YP_009199775.1 | NC_028813_p92 | hypothetical protein | phrog_22980 | unknown function | unknown function | 1 | 52069 | 52311 |
| YP_009199787.1 | NC_028813_p104 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 56854 | 57066 |
| YP_009199722.1 | NC_028813_p39 | hypothetical protein | phrog_5648 | unknown function | unknown function | -1 | 30840 | 31076 |
| YP_009199782.1 | NC_028813_p99 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 54122 | 54535 |
| YP_009199738.1 | NC_028813_p55 | NKF protein | phrog_1849 | unknown function | unknown function | 1 | 37934 | 38215 |
| YP_009199735.1 | NC_028813_p52 | DNA replication protein | phrog_1816 | unknown function | unknown function | 1 | 36781 | 36969 |
| YP_009199751.1 | NC_028813_p68 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 42620 | 44155 |
| YP_009199707.1 | NC_028813_p24 | hypothetical protein | phrog_2012 | minor tail protein | tail | 1 | 23474 | 24112 |
| YP_009199739.1 | NC_028813_p56 | NKF protein | phrog_658 | unknown function | unknown function | 1 | 38212 | 38559 |
| YP_009199695.1 | NC_028813_p12 | major tail protein | phrog_476 | major tail protein | tail | 1 | 7462 | 8271 |
| YP_009199750.1 | NC_028813_p67 | hypothetical protein | phrog_3821 | unknown function | unknown function | 1 | 42273 | 42623 |
| YP_009199730.1 | NC_028813_p47 | CRO protein | phrog_2104 | unknown function | unknown function | 1 | 34933 | 35229 |
| YP_009199760.1 | NC_028813_p77 | hypothetical protein | phrog_2080 | unknown function | unknown function | 1 | 48510 | 48773 |
| YP_009199764.1 | NC_028813_p81 | hypothetical protein | phrog_722 | unknown function | unknown function | 1 | 49474 | 49662 |
| YP_009199736.1 | NC_028813_p53 | NKF protein | phrog_1797 | unknown function | unknown function | 1 | 36966 | 37559 |
| YP_009199685.1 | NC_028813_p2 | terminase small subunit | phrog_4479 | terminase small subunit | head and packaging | 1 | 445 | 699 |
| YP_009199697.1 | NC_028813_p14 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8392 | 8943 |
| YP_009199732.1 | NC_028813_p49 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36283 | 36501 |
| YP_009199771.1 | NC_028813_p88 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51351 | 51530 |
| YP_009199766.1 | NC_028813_p83 | hypothetical protein | phrog_7842 | unknown function | unknown function | 1 | 50090 | 50263 |
| YP_009199717.1 | NC_028813_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 28884 | 29258 |
| YP_009199742.1 | NC_028813_p59 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39395 | 39748 |
| YP_009199749.1 | NC_028813_p66 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 42125 | 42280 |
| YP_009199741.1 | NC_028813_p58 | HTH DNA binding protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39051 | 39398 |
| YP_009199706.1 | NC_028813_p23 | hypothetical protein | phrog_2005 | minor tail protein | tail | 1 | 23206 | 23460 |
| YP_009199686.1 | NC_028813_p3 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 671 | 2158 |
| YP_009199756.1 | NC_028813_p73 | DNA endonuclease | phrog_1271 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 46364 | 47161 |
| YP_009199702.1 | NC_028813_p19 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17241 | 19778 |
| YP_009199770.1 | NC_028813_p87 | hypothetical protein | phrog_24916 | unknown function | unknown function | 1 | 51022 | 51354 |
| YP_009199776.1 | NC_028813_p93 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 52298 | 52573 |
| YP_009199693.1 | NC_028813_p10 | head-to-tail connector | phrog_1929 | head-tail connector protein | connector | 1 | 6662 | 6958 |
| YP_009199709.1 | NC_028813_p26 | hypothetical protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 25093 | 25284 |
| YP_009199731.1 | NC_028813_p48 | DNA binding protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 35285 | 36286 |
| YP_009199724.1 | NC_028813_p41 | HTH DNA binding protein | phrog_5497 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31261 | 31458 |
| YP_009199687.1 | NC_028813_p4 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2200 | 3621 |
| YP_009199726.1 | NC_028813_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31620 | 31952 |
| YP_009199777.1 | NC_028813_p94 | hypothetical protein | phrog_1467 | unknown function | unknown function | 1 | 52570 | 53214 |
| YP_009199757.1 | NC_028813_p74 | DNA methylase domain protein | phrog_3008 | DNA methyltransferase | other | 1 | 47273 | 47527 |
| YP_009199712.1 | NC_028813_p29 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 25880 | 26047 |
| YP_009199691.1 | NC_028813_p8 | head-to-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 5928 | 6299 |
| YP_009199733.1 | NC_028813_p50 | NKF protein | phrog_5563 | unknown function | unknown function | 1 | 36498 | 36590 |
| YP_009199728.1 | NC_028813_p45 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 33548 | 33994 |
| YP_009199689.1 | NC_028813_p6 | scaffolding protein | phrog_4638 | head scaffolding protein | head and packaging | 1 | 4409 | 4945 |
| YP_009199744.1 | NC_028813_p61 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40544 | 40774 |
| YP_009199710.1 | NC_028813_p27 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 25434 | 25730 |
| YP_009199754.1 | NC_028813_p71 | hypothetical protein | phrog_8611 | unknown function | unknown function | -1 | 44662 | 44979 |
| YP_009199729.1 | NC_028813_p46 | immunity repressor | phrog_2838 | transcriptional repressor | transcription regulation | -1 | 34257 | 34859 |
| YP_009199721.1 | NC_028813_p38 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 30624 | 30716 |
| YP_009199690.1 | NC_028813_p7 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 5008 | 5916 |
| YP_009199718.1 | NC_028813_p35 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 29282 | 29515 |
| YP_009199700.1 | NC_028813_p17 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14650 | 16359 |
| YP_009199761.1 | NC_028813_p78 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 48770 | 48961 |
| YP_009199768.1 | NC_028813_p85 | hypothetical protein | phrog_2939 | unknown function | unknown function | 1 | 50625 | 50837 |
| YP_009199711.1 | NC_028813_p28 | hypothetical protein | phrog_932 | unknown function | unknown function | 1 | 25737 | 25883 |
| YP_009199734.1 | NC_028813_p51 | terminase small subunit | phrog_66 | excisionase and transcriptional regulator | integration and excision | 1 | 36587 | 36784 |
| YP_009199767.1 | NC_028813_p84 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50260 | 50628 |
| YP_009199705.1 | NC_028813_p22 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 22842 | 23183 |
| YP_009199748.1 | NC_028813_p65 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 41962 | 42147 |
| YP_009199692.1 | NC_028813_p9 | head-to-tail connector | phrog_763 | head-tail adaptor | connector | 1 | 6296 | 6625 |
| YP_009199714.1 | NC_028813_p31 | lysin A | phrog_700 | endolysin | lysis | 1 | 26351 | 27637 |
| YP_009199773.1 | NC_028813_p90 | hypothetical protein | phrog_5186 | unknown function | unknown function | 1 | 51664 | 51837 |
| YP_009199763.1 | NC_028813_p80 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 49149 | 49481 |
| YP_009199701.1 | NC_028813_p18 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16414 | 17244 |
| YP_009199725.1 | NC_028813_p42 | hypothetical protein | phrog_7147 | unknown function | unknown function | -1 | 31458 | 31778 |
| YP_009199708.1 | NC_028813_p25 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 24109 | 25089 |
| YP_009199703.1 | NC_028813_p20 | D-ala-D-ala-decarboxylase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19775 | 21661 |
| YP_009199747.1 | NC_028813_p64 | HNH endonuclease domain protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41603 | 41965 |
| YP_009199784.1 | NC_028813_p101 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 54767 | 54928 |
| YP_009199769.1 | NC_028813_p86 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 50834 | 51025 |
| YP_009199753.1 | NC_028813_p70 | hypothetical protein | phrog_8485 | unknown function | unknown function | -1 | 44278 | 44655 |
| YP_009199698.1 | NC_028813_p15 | tape measure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9346 | 12870 |
| YP_009199752.1 | NC_028813_p69 | DNA binding protein | phrog_6506 | Arc-like repressor | transcription regulation | -1 | 44124 | 44285 |
| YP_009199786.1 | NC_028813_p103 | Ser/Thr kinase | phrog_3297 | kinase | other | 1 | 56384 | 56857 |