| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028815 |
Definition |
Mycobacterium phage Nhonho, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
REFSEQ |
Length |
51355 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
88 |
%GC |
63.75 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009199820.1 | NC_028815_p25 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19072 | 21129 |
| YP_009199838.1 | NC_028815_p43 | hypothetical protein | phrog_9812 | unknown function | unknown function | -1 | 32572 | 32823 |
| YP_009199876.1 | NC_028815_p81 | NifU-like protein | phrog_8429 | NifU-like Fe-S cluster assembly protein | moron, auxiliary metabolic gene and host takeover | -1 | 48392 | 48817 |
| YP_009199879.1 | NC_028815_p84 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 49877 | 50089 |
| YP_009199822.1 | NC_028815_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21330 | 23132 |
| YP_009199798.1 | NC_028815_p3 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1077 | 1517 |
| YP_009199853.1 | NC_028815_p58 | EndoVII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 40777 | 41316 |
| YP_009199844.1 | NC_028815_p49 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35983 | 36168 |
| YP_009199833.1 | NC_028815_p38 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31389 | 31661 |
| YP_009199824.1 | NC_028815_p29 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23628 | 23960 |
| YP_009199832.1 | NC_028815_p37 | hypothetical protein | phrog_95 | integrase | integration and excision | 1 | 29766 | 31268 |
| YP_009199850.1 | NC_028815_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39997 | 40512 |
| YP_009199875.1 | NC_028815_p80 | hypothetical protein | phrog_932 | unknown function | unknown function | -1 | 47974 | 48123 |
| YP_009199831.1 | NC_028815_p36 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29331 | 29615 |
| YP_009199840.1 | NC_028815_p45 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 33245 | 35071 |
| YP_009199800.1 | NC_028815_p5 | hypothetical protein | phrog_1197 | tail protein | tail | 1 | 2136 | 3206 |
| YP_009199816.1 | NC_028815_p21 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 14795 | 15646 |
| YP_009199846.1 | NC_028815_p51 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36949 | 37089 |
| YP_009199872.1 | NC_028815_p77 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47520 | 47687 |
| YP_009199817.1 | NC_028815_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15759 | 16558 |
| YP_009199825.1 | NC_028815_p30 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 23957 | 24304 |
| YP_009199811.1 | NC_028815_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12600 | 13130 |
| YP_009199828.1 | NC_028815_p33 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27746 | 28066 |
| YP_009199869.1 | NC_028815_p74 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46866 | 47135 |
| YP_009199851.1 | NC_028815_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 40491 | 40649 |
| YP_009199836.1 | NC_028815_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 32211 | 32297 |
| YP_009199809.1 | NC_028815_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10979 | 11491 |
| YP_009199870.1 | NC_028815_p75 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 47132 | 47335 |
| YP_009199866.1 | NC_028815_p71 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45419 | 45931 |
| YP_009199827.1 | NC_028815_p32 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26175 | 27653 |
| YP_009199835.1 | NC_028815_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 32044 | 32214 |
| YP_009199883.1 | NC_028815_p88 | hypothetical protein | singleton | unknown function | unknown function | 1 | 50970 | 51179 |
| YP_009199847.1 | NC_028815_p52 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 37094 | 38812 |
| YP_009199839.1 | NC_028815_p44 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32859 | 33224 |
| YP_009199807.1 | NC_028815_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8540 | 9982 |
| YP_009199841.1 | NC_028815_p46 | hypothetical protein | phrog_542 | unknown function | unknown function | -1 | 35112 | 35237 |
| YP_009199855.1 | NC_028815_p60 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 41386 | 41685 |
| YP_009199826.1 | NC_028815_p31 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24329 | 26182 |
| YP_009199873.1 | NC_028815_p78 | hypothetical protein | phrog_2093 | unknown function | unknown function | -1 | 47684 | 47812 |
| YP_009199860.1 | NC_028815_p65 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 43034 | 43327 |
| YP_009199818.1 | NC_028815_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15759 | 16136 |
| YP_009199882.1 | NC_028815_p87 | hypothetical protein | phrog_828 | unknown function | unknown function | 1 | 50646 | 50852 |
| YP_009199814.1 | NC_028815_p19 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13941 | 14336 |
| YP_009199849.1 | NC_028815_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 39630 | 40151 |
| YP_009199880.1 | NC_028815_p85 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 50112 | 50231 |
| YP_009199796.1 | NC_028815_p1 | hypothetical protein | phrog_4649 | unknown function | unknown function | 1 | 597 | 749 |
| YP_009199857.1 | NC_028815_p62 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 41918 | 42739 |
| YP_009199864.1 | NC_028815_p69 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44673 | 44987 |
| YP_009199868.1 | NC_028815_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46489 | 46869 |
| YP_009199823.1 | NC_028815_p28 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23170 | 23616 |
| YP_009199808.1 | NC_028815_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9979 | 10920 |
| YP_009199830.1 | NC_028815_p35 | hypothetical protein | phrog_754 | minor tail protein | tail | 1 | 28264 | 29211 |
| YP_009199871.1 | NC_028815_p76 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 47332 | 47520 |
| YP_009199858.1 | NC_028815_p63 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 42739 | 42912 |
| YP_009199834.1 | NC_028815_p39 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 31658 | 32047 |
| YP_009199863.1 | NC_028815_p68 | RecB-like protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43856 | 44680 |
| YP_009199852.1 | NC_028815_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40646 | 40780 |
| YP_009199865.1 | NC_028815_p70 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44984 | 45379 |
| YP_009199810.1 | NC_028815_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11502 | 12521 |
| YP_009199812.1 | NC_028815_p17 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13130 | 13579 |
| YP_009199799.1 | NC_028815_p4 | hypothetical protein | phrog_2830 | unknown function | unknown function | 1 | 1631 | 1861 |
| YP_009199843.1 | NC_028815_p48 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35495 | 35986 |
| YP_009199848.1 | NC_028815_p53 | hypothetical protein | phrog_1167 | phosphofructokinase | other | -1 | 38809 | 39633 |
| YP_009199805.1 | NC_028815_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5867 | 6835 |
| YP_009199797.1 | NC_028815_p2 | HNH endonuclease domain protein | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 746 | 1042 |
| YP_009199802.1 | NC_028815_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3931 | 4191 |
| YP_009199862.1 | NC_028815_p67 | hypothetical protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43638 | 43829 |
| YP_009199845.1 | NC_028815_p50 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 36165 | 36956 |
| YP_009199803.1 | NC_028815_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4199 | 4456 |
| YP_009199815.1 | NC_028815_p20 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 14340 | 14786 |
| YP_009199801.1 | NC_028815_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3216 | 3917 |
| YP_009199878.1 | NC_028815_p83 | hypothetical protein | phrog_14752 | unknown function | unknown function | -1 | 49728 | 49880 |
| YP_009199813.1 | NC_028815_p18 | hypothetical protein | phrog_320 | head closure Hc1 | connector | 1 | 13579 | 13941 |
| YP_009199877.1 | NC_028815_p82 | PAPS reductase domain protein | phrog_424 | phosphoadenosine phosphosulfate reductase | moron, auxiliary metabolic gene and host takeover | -1 | 48814 | 49731 |
| YP_009199806.1 | NC_028815_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6855 | 8543 |
| YP_009199881.1 | NC_028815_p86 | hypothetical protein | phrog_2985 | unknown function | unknown function | 1 | 50408 | 50563 |
| YP_009199861.1 | NC_028815_p66 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 43324 | 43641 |
| YP_009199859.1 | NC_028815_p64 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42909 | 43037 |
| YP_009199842.1 | NC_028815_p47 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 35234 | 35464 |
| YP_009199867.1 | NC_028815_p72 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46193 | 46492 |
| YP_009199837.1 | NC_028815_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 32303 | 32575 |
| YP_009199854.1 | NC_028815_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 41303 | 41389 |
| YP_009199804.1 | NC_028815_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4456 | 5877 |
| YP_009199829.1 | NC_028815_p34 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28076 | 28267 |
| YP_009199874.1 | NC_028815_p79 | hypothetical protein | phrog_17075 | unknown function | unknown function | -1 | 47809 | 47955 |
| YP_009199856.1 | NC_028815_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41682 | 41921 |
| YP_009199819.1 | NC_028815_p24 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 16571 | 19048 |
| YP_009199821.1 | NC_028815_p26 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21148 | 21330 |