Genomic map of Mycobacterium phage Nhonho (NC_028815)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028815
Definition
Mycobacterium phage Nhonho, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus.
DB of origin
REFSEQ
Length
51355
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
88
%GC
63.75
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009199820.1 NC_028815_p25 minor tail protein phrog_106 minor tail protein tail 1 19072 21129
YP_009199838.1 NC_028815_p43 hypothetical protein phrog_9812 unknown function unknown function -1 32572 32823
YP_009199876.1 NC_028815_p81 NifU-like protein phrog_8429 NifU-like Fe-S cluster assembly protein moron, auxiliary metabolic gene and host takeover -1 48392 48817
YP_009199879.1 NC_028815_p84 hypothetical protein phrog_2287 unknown function unknown function -1 49877 50089
YP_009199822.1 NC_028815_p27 minor tail protein phrog_110 minor tail protein tail 1 21330 23132
YP_009199798.1 NC_028815_p3 hypothetical protein phrog_226 minor tail protein tail 1 1077 1517
YP_009199853.1 NC_028815_p58 EndoVII phrog_307 endonuclease VII DNA, RNA and nucleotide metabolism -1 40777 41316
YP_009199844.1 NC_028815_p49 hypothetical protein phrog_499 unknown function unknown function -1 35983 36168
YP_009199833.1 NC_028815_p38 hypothetical protein phrog_1966 unknown function unknown function -1 31389 31661
YP_009199824.1 NC_028815_p29 hypothetical protein phrog_981 minor tail protein tail 1 23628 23960
YP_009199832.1 NC_028815_p37 hypothetical protein phrog_95 integrase integration and excision 1 29766 31268
YP_009199850.1 NC_028815_p55 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism -1 39997 40512
YP_009199875.1 NC_028815_p80 hypothetical protein phrog_932 unknown function unknown function -1 47974 48123
YP_009199831.1 NC_028815_p36 hypothetical protein phrog_411 unknown function unknown function 1 29331 29615
YP_009199840.1 NC_028815_p45 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 33245 35071
YP_009199800.1 NC_028815_p5 hypothetical protein phrog_1197 tail protein tail 1 2136 3206
YP_009199816.1 NC_028815_p21 hypothetical protein phrog_117 major tail protein tail 1 14795 15646
YP_009199846.1 NC_028815_p51 hypothetical protein phrog_1782 site-specific recombination directionality factor RDF integration and excision -1 36949 37089
YP_009199872.1 NC_028815_p77 hypothetical protein phrog_861 site-specific recombination directionality factor RDF integration and excision -1 47520 47687
YP_009199817.1 NC_028815_p22 tail assembly chaperone phrog_393 tail assembly chaperone tail 1 15759 16558
YP_009199825.1 NC_028815_p30 hypothetical protein phrog_1397 unknown function unknown function 1 23957 24304
YP_009199811.1 NC_028815_p16 hypothetical protein phrog_1857 head-tail connector protein connector 1 12600 13130
YP_009199828.1 NC_028815_p33 hypothetical protein phrog_644 unknown function unknown function 1 27746 28066
YP_009199869.1 NC_028815_p74 hypothetical protein phrog_1720 unknown function unknown function -1 46866 47135
YP_009199851.1 NC_028815_p56 hypothetical protein phrog_1783 unknown function unknown function -1 40491 40649
YP_009199836.1 NC_028815_p41 hypothetical protein phrog_1860 unknown function unknown function -1 32211 32297
YP_009199809.1 NC_028815_p14 scaffolding protein phrog_233 head scaffolding protein head and packaging 1 10979 11491
YP_009199870.1 NC_028815_p75 hypothetical protein phrog_1387 unknown function unknown function -1 47132 47335
YP_009199866.1 NC_028815_p71 immunity repressor phrog_357 transcriptional repressor transcription regulation -1 45419 45931
YP_009199827.1 NC_028815_p32 minor tail protein phrog_382 minor tail protein with lysin activity tail 1 26175 27653
YP_009199835.1 NC_028815_p40 hypothetical protein phrog_2035 unknown function unknown function -1 32044 32214
YP_009199883.1 NC_028815_p88 hypothetical protein singleton unknown function unknown function 1 50970 51179
YP_009199847.1 NC_028815_p52 phosphoesterase phrog_221 metallo-phosphoesterase other -1 37094 38812
YP_009199839.1 NC_028815_p44 hypothetical protein phrog_383 unknown function unknown function -1 32859 33224
YP_009199807.1 NC_028815_p12 portal protein phrog_104 portal protein head and packaging 1 8540 9982
YP_009199841.1 NC_028815_p46 hypothetical protein phrog_542 unknown function unknown function -1 35112 35237
YP_009199855.1 NC_028815_p60 NrdH phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 41386 41685
YP_009199826.1 NC_028815_p31 minor tail protein phrog_346 minor tail protein tail 1 24329 26182
YP_009199873.1 NC_028815_p78 hypothetical protein phrog_2093 unknown function unknown function -1 47684 47812
YP_009199860.1 NC_028815_p65 hypothetical protein phrog_520 unknown function unknown function -1 43034 43327
YP_009199818.1 NC_028815_p23 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 15759 16136
YP_009199882.1 NC_028815_p87 hypothetical protein phrog_828 unknown function unknown function 1 50646 50852
YP_009199814.1 NC_028815_p19 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 13941 14336
YP_009199849.1 NC_028815_p54 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 39630 40151
YP_009199880.1 NC_028815_p85 hypothetical protein phrog_2212 unknown function unknown function -1 50112 50231
YP_009199796.1 NC_028815_p1 hypothetical protein phrog_4649 unknown function unknown function 1 597 749
YP_009199857.1 NC_028815_p62 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 41918 42739
YP_009199864.1 NC_028815_p69 hypothetical protein phrog_1584 unknown function unknown function -1 44673 44987
YP_009199868.1 NC_028815_p73 hypothetical protein singleton unknown function unknown function -1 46489 46869
YP_009199823.1 NC_028815_p28 hypothetical protein phrog_352 minor tail protein tail 1 23170 23616
YP_009199808.1 NC_028815_p13 capsid maturation protease phrog_193 head maturation protease head and packaging 1 9979 10920
YP_009199830.1 NC_028815_p35 hypothetical protein phrog_754 minor tail protein tail 1 28264 29211
YP_009199871.1 NC_028815_p76 hypothetical protein phrog_1155 unknown function unknown function -1 47332 47520
YP_009199858.1 NC_028815_p63 hypothetical protein phrog_2507 unknown function unknown function -1 42739 42912
YP_009199834.1 NC_028815_p39 hypothetical protein phrog_2387 nucleotide kinase other -1 31658 32047
YP_009199863.1 NC_028815_p68 RecB-like protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 43856 44680
YP_009199852.1 NC_028815_p57 hypothetical protein phrog_397 unknown function unknown function -1 40646 40780
YP_009199865.1 NC_028815_p70 hypothetical protein phrog_1809 unknown function unknown function -1 44984 45379
YP_009199810.1 NC_028815_p15 major capsid protein phrog_10 major head protein head and packaging 1 11502 12521
YP_009199812.1 NC_028815_p17 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 13130 13579
YP_009199799.1 NC_028815_p4 hypothetical protein phrog_2830 unknown function unknown function 1 1631 1861
YP_009199843.1 NC_028815_p48 hypothetical protein phrog_364 ribonucleoside reductase class II DNA, RNA and nucleotide metabolism -1 35495 35986
YP_009199848.1 NC_028815_p53 hypothetical protein phrog_1167 phosphofructokinase other -1 38809 39633
YP_009199805.1 NC_028815_p10 lysin B phrog_102 endolysin lysis 1 5867 6835
YP_009199797.1 NC_028815_p2 HNH endonuclease domain protein phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 746 1042
YP_009199802.1 NC_028815_p7 hypothetical protein phrog_1718 tail protein tail 1 3931 4191
YP_009199862.1 NC_028815_p67 hypothetical protein phrog_1763 HTH DNA binding protein DNA, RNA and nucleotide metabolism -1 43638 43829
YP_009199845.1 NC_028815_p50 hypothetical protein phrog_354 sigma-K factor transcription regulation -1 36165 36956
YP_009199803.1 NC_028815_p8 hypothetical protein phrog_747 unknown function unknown function 1 4199 4456
YP_009199815.1 NC_028815_p20 hypothetical protein phrog_123 tail terminator connector 1 14340 14786
YP_009199801.1 NC_028815_p6 hypothetical protein phrog_553 minor tail protein tail 1 3216 3917
YP_009199878.1 NC_028815_p83 hypothetical protein phrog_14752 unknown function unknown function -1 49728 49880
YP_009199813.1 NC_028815_p18 hypothetical protein phrog_320 head closure Hc1 connector 1 13579 13941
YP_009199877.1 NC_028815_p82 PAPS reductase domain protein phrog_424 phosphoadenosine phosphosulfate reductase moron, auxiliary metabolic gene and host takeover -1 48814 49731
YP_009199806.1 NC_028815_p11 terminase large subunit phrog_9 terminase large subunit head and packaging 1 6855 8543
YP_009199881.1 NC_028815_p86 hypothetical protein phrog_2985 unknown function unknown function 1 50408 50563
YP_009199861.1 NC_028815_p66 hypothetical protein phrog_2184 unknown function unknown function -1 43324 43641
YP_009199859.1 NC_028815_p64 hypothetical protein phrog_1705 unknown function unknown function -1 42909 43037
YP_009199842.1 NC_028815_p47 hypothetical protein phrog_1781 unknown function unknown function -1 35234 35464
YP_009199867.1 NC_028815_p72 hypothetical protein phrog_439 site-specific recombination directionality factor RDF integration and excision -1 46193 46492
YP_009199837.1 NC_028815_p42 hypothetical protein phrog_1971 unknown function unknown function -1 32303 32575
YP_009199854.1 NC_028815_p59 hypothetical protein phrog_1019 unknown function unknown function -1 41303 41389
YP_009199804.1 NC_028815_p9 lysin A phrog_317 endolysin lysis 1 4456 5877
YP_009199829.1 NC_028815_p34 hypothetical protein phrog_1560 unknown function unknown function 1 28076 28267
YP_009199874.1 NC_028815_p79 hypothetical protein phrog_17075 unknown function unknown function -1 47809 47955
YP_009199856.1 NC_028815_p61 hypothetical protein singleton unknown function unknown function -1 41682 41921
YP_009199819.1 NC_028815_p24 tapemeasure phrog_305 tail length tape measure protein tail 1 16571 19048
YP_009199821.1 NC_028815_p26 hypothetical protein phrog_1543 minor tail protein tail 1 21148 21330