Genomic map of Staphylococcus phage StB20-like (NC_028821)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028821
Definition
Staphylococcus phage StB20-like, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
40670
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
33.28
Number of singletons
7
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009200569.1 NC_028821_p46 hypothetical protein phrog_750 unknown function unknown function 1 33863 34219
YP_009200560.1 NC_028821_p37 beta-lactamase superfamily domain protein phrog_392 metal-dependent hydrolase other -1 28455 28940
YP_009200582.1 NC_028821_p59 hypothetical protein singleton unknown function unknown function -1 40166 40381
YP_009200528.1 NC_028821_p5 hypothetical protein phrog_2968 tail protein tail -1 3470 3895
YP_009200529.1 NC_028821_p6 hypothetical protein phrog_4175 poly-gamma-glutamate hydrolase other -1 3892 4515
YP_009200543.1 NC_028821_p20 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector -1 17504 17845
YP_009200575.1 NC_028821_p52 LexA repressor phrog_4 transcriptional repressor transcription regulation 1 36141 36767
YP_009200550.1 NC_028821_p27 hypothetical protein phrog_36 transcriptional regulator transcription regulation -1 24554 25000
YP_009200555.1 NC_028821_p32 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 25668 26216
YP_009200573.1 NC_028821_p50 hypothetical protein phrog_12362 unknown function unknown function -1 35534 35701
YP_009200542.1 NC_028821_p19 hypothetical protein phrog_25 head closure Hc1 connector -1 17185 17514
YP_009200567.1 NC_028821_p44 hypothetical protein phrog_10049 unknown function unknown function -1 33485 33598
YP_009200534.1 NC_028821_p11 tail protein phrog_33 distal tail protein Dit tail -1 9347 10180
YP_009200552.1 NC_028821_p29 transcriptional activator RinB phrog_152 RinB-like transcriptional activator transcription regulation -1 25166 25333
YP_009200526.1 NC_028821_p3 hypothetical protein phrog_8256 unknown function unknown function -1 2520 2918
YP_009200564.1 NC_028821_p41 hypothetical protein phrog_2527 unknown function unknown function -1 32030 32293
YP_009200562.1 NC_028821_p39 recombination and repair protein RecT phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 29153 30076
YP_009200548.1 NC_028821_p25 terminase phrog_9 terminase large subunit head and packaging -1 21220 22977
YP_009200546.1 NC_028821_p23 portal protein phrog_12 portal protein head and packaging -1 19778 21010
YP_009200530.1 NC_028821_p7 hypothetical protein phrog_257 minor tail protein tail -1 4520 5734
YP_009200565.1 NC_028821_p42 hypothetical protein phrog_369 unknown function unknown function -1 32372 32545
YP_009200524.1 NC_028821_p1 glycyl-glycine endopeptidase ALE-1 precursor phrog_635 endolysin lysis -1 608 2071
YP_009200578.1 NC_028821_p55 hypothetical protein singleton unknown function unknown function 1 38325 38510
YP_009200547.1 NC_028821_p24 hypothetical protein phrog_502 membrane protein moron, auxiliary metabolic gene and host takeover -1 21010 21204
YP_009200535.1 NC_028821_p12 glycyl-glycine endopeptidase ALE-1 precursor phrog_167 tail length tape measure protein tail -1 10182 14894
YP_009200571.1 NC_028821_p48 antirepressor protein KilAC domain protein phrog_63 anti-repressor Ant transcription regulation -1 34479 35225
YP_009200544.1 NC_028821_p21 capsid family protein phrog_10 major head protein head and packaging -1 17864 19189
YP_009200557.1 NC_028821_p34 hypothetical protein phrog_433 unknown function unknown function -1 26753 26980
YP_009200579.1 NC_028821_p56 SpoOM protein singleton unknown function unknown function 1 38577 38981
YP_009200577.1 NC_028821_p54 capsule biosynthesis protein CapA phrog_23677 unknown function unknown function 1 37001 38140
YP_009200581.1 NC_028821_p58 hypothetical protein singleton unknown function unknown function -1 40027 40194
YP_009200525.1 NC_028821_p2 holin phrog_962 holin lysis -1 2046 2456
YP_009200574.1 NC_028821_p51 helix-turn-helix protein phrog_3 transcriptional repressor transcription regulation -1 35762 35989
YP_009200563.1 NC_028821_p40 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 30078 32027
YP_009200540.1 NC_028821_p17 hypothetical protein phrog_78 tail terminator connector -1 16377 16781
YP_009200537.1 NC_028821_p14 hypothetical protein phrog_187 head-tail adaptor connector -1 15108 15470
YP_009200576.1 NC_028821_p53 hypothetical protein phrog_17674 unknown function unknown function 1 36812 36979
YP_009200532.1 NC_028821_p9 hypothetical protein phrog_10463 unknown function unknown function -1 7612 7785
YP_009200566.1 NC_028821_p43 hypothetical protein phrog_2232 unknown function unknown function 1 32640 33488
YP_009200580.1 NC_028821_p57 hypothetical protein phrog_9605 unknown function unknown function 1 39023 40006
YP_009200558.1 NC_028821_p35 replication initiation and membrane attachment phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism -1 26999 27964
YP_009200539.1 NC_028821_p16 major tail protein phrog_88 major tail protein tail -1 15738 16364
YP_009200570.1 NC_028821_p47 hypothetical protein phrog_643 transcriptional regulator transcription regulation -1 34205 34438
YP_009200559.1 NC_028821_p36 single-stranded DNA-binding protein ssb phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 27987 28454
YP_009200554.1 NC_028821_p31 hypothetical protein singleton unknown function unknown function -1 25592 25714
YP_009200536.1 NC_028821_p13 hypothetical protein phrog_1963 unknown function unknown function -1 14923 15075
YP_009200527.1 NC_028821_p4 hypothetical protein phrog_2990 unknown function unknown function -1 3076 3483
YP_009200572.1 NC_028821_p49 CRISPR-associated endoribonuclease Cas2 phrog_1090 unknown function unknown function 1 35274 35537
YP_009200545.1 NC_028821_p22 prohead protease phrog_80 head maturation protease head and packaging -1 19231 19794
YP_009200531.1 NC_028821_p8 zinc carboxypeptidase phrog_4722 zinc carboxypeptidase other -1 5734 7596
YP_009200549.1 NC_028821_p26 terminase small subunit phrog_83 terminase small subunit head and packaging -1 22964 23521
YP_009200556.1 NC_028821_p33 endodeoxyribonuclease RusA phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 26336 26743
YP_009200553.1 NC_028821_p30 hypothetical protein singleton unknown function unknown function -1 25326 25595
YP_009200561.1 NC_028821_p38 hypothetical protein singleton unknown function unknown function -1 29009 29128
YP_009200533.1 NC_028821_p10 endopeptidase tail phrog_326 tail protein with endopeptidase domain other -1 7778 9337
YP_009200568.1 NC_028821_p45 hypothetical protein phrog_5920 unknown function unknown function -1 33614 33823
YP_009200538.1 NC_028821_p15 hypothetical protein phrog_3673 Arc-like repressor transcription regulation -1 15534 15719
YP_009200541.1 NC_028821_p18 hypothetical protein phrog_5 tail completion or Neck1 protein connector -1 16784 17050
YP_009200551.1 NC_028821_p28 hypothetical protein phrog_386 unknown function unknown function -1 25017 25166