| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028823 |
Definition |
Mycobacterium phage Bipolar, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Cheoctovirus; unclassified Cheoctovirus. |
DB of origin |
REFSEQ |
Length |
58985 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
106 |
%GC |
61.37 |
Number of singletons |
3 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009200690.1 | NC_028823_p63 | hypothetical protein | phrog_5168 | unknown function | unknown function | 1 | 41255 | 41719 |
| YP_009200721.1 | NC_028823_p94 | hypothetical protein | phrog_2247 | unknown function | unknown function | 1 | 53317 | 53586 |
| YP_009200668.1 | NC_028823_p41 | immunity repressor | phrog_3949 | transcriptional repressor | transcription regulation | -1 | 33277 | 33810 |
| YP_009200672.1 | NC_028823_p45 | hypothetical protein | phrog_2025 | unknown function | unknown function | 1 | 36067 | 36282 |
| YP_009200681.1 | NC_028823_p54 | hypothetical protein | phrog_1849 | unknown function | unknown function | 1 | 38577 | 38858 |
| YP_009200662.1 | NC_028823_p35 | hypothetical protein | phrog_1839 | unknown function | unknown function | 1 | 29571 | 29663 |
| YP_009200677.1 | NC_028823_p50 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 37100 | 37534 |
| YP_009200728.1 | NC_028823_p101 | hypothetical protein | phrog_1385 | unknown function | unknown function | 1 | 55837 | 56079 |
| YP_009200659.1 | NC_028823_p32 | DnaQ-like exonuclease | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 28452 | 29273 |
| YP_009200710.1 | NC_028823_p83 | hypothetical protein | phrog_2591 | unknown function | unknown function | 1 | 50376 | 50624 |
| YP_009200724.1 | NC_028823_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54738 | 54872 |
| YP_009200654.1 | NC_028823_p27 | lysin A | phrog_700 | endolysin | lysis | 1 | 25385 | 26593 |
| YP_009200678.1 | NC_028823_p51 | hypothetical protein | phrog_1816 | unknown function | unknown function | 1 | 37677 | 37868 |
| YP_009200727.1 | NC_028823_p100 | hypothetical protein | phrog_1186 | unknown function | unknown function | 1 | 55427 | 55840 |
| YP_009200655.1 | NC_028823_p28 | lysin B | phrog_102 | endolysin | lysis | 1 | 26593 | 27594 |
| YP_009200661.1 | NC_028823_p34 | hypothetical protein | phrog_1791 | unknown function | unknown function | 1 | 29357 | 29578 |
| YP_009200647.1 | NC_028823_p20 | minor tail protein | phrog_553 | minor tail protein | tail | 1 | 22733 | 23677 |
| YP_009200726.1 | NC_028823_p99 | hypothetical protein | phrog_1694 | unknown function | unknown function | 1 | 55233 | 55430 |
| YP_009200713.1 | NC_028823_p86 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 51239 | 51601 |
| YP_009200696.1 | NC_028823_p69 | hypothetical protein | phrog_1008 | DNA methyltransferase | other | 1 | 43797 | 44348 |
| YP_009200641.1 | NC_028823_p14 | tapemeasure protein | phrog_1942 | tail length tape measure protein | tail | 1 | 9500 | 13027 |
| YP_009200673.1 | NC_028823_p46 | hypothetical protein | phrog_5563 | unknown function | unknown function | 1 | 36279 | 36377 |
| YP_009200631.1 | NC_028823_p4 | capsid maturation protease | phrog_1522 | head maturation protease | head and packaging | 1 | 3612 | 4367 |
| YP_009200643.1 | NC_028823_p16 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 14807 | 16516 |
| YP_009200665.1 | NC_028823_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30922 | 31101 |
| YP_009200628.1 | NC_028823_p1 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 109 | 564 |
| YP_009200629.1 | NC_028823_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 587 | 2224 |
| YP_009200718.1 | NC_028823_p91 | hypothetical protein | phrog_6676 | unknown function | unknown function | 1 | 52574 | 52972 |
| YP_009200715.1 | NC_028823_p88 | hypothetical protein | phrog_12283 | unknown function | unknown function | 1 | 51911 | 52264 |
| YP_009200676.1 | NC_028823_p49 | hypothetical protein | phrog_780 | unknown function | unknown function | 1 | 36854 | 37099 |
| YP_009200720.1 | NC_028823_p93 | hypothetical protein | phrog_2278 | unknown function | unknown function | 1 | 53088 | 53324 |
| YP_009200651.1 | NC_028823_p24 | hypothetical protein | phrog_28345 | unknown function | unknown function | -1 | 24802 | 24915 |
| YP_009200688.1 | NC_028823_p61 | hypothetical protein | phrog_11976 | unknown function | unknown function | 1 | 40832 | 40987 |
| YP_009200658.1 | NC_028823_p31 | hypothetical protein | phrog_2004 | unknown function | unknown function | 1 | 28232 | 28465 |
| YP_009200722.1 | NC_028823_p95 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 53583 | 54269 |
| YP_009200692.1 | NC_028823_p65 | HNH endonuclease | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 42690 | 43052 |
| YP_009200712.1 | NC_028823_p85 | hypothetical protein | phrog_2021 | unknown function | unknown function | 1 | 50898 | 51242 |
| YP_009200703.1 | NC_028823_p76 | DNA methylase | phrog_67 | DNA methyltransferase | other | 1 | 46390 | 48396 |
| YP_009200640.1 | NC_028823_p13 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 8545 | 9096 |
| YP_009200701.1 | NC_028823_p74 | hypothetical protein | phrog_7170 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 45825 | 46244 |
| YP_009200687.1 | NC_028823_p60 | hypothetical protein | phrog_1834 | unknown function | unknown function | 1 | 40614 | 40844 |
| YP_009200697.1 | NC_028823_p70 | hypothetical protein | phrog_2070 | unknown function | unknown function | 1 | 44365 | 44526 |
| YP_009200686.1 | NC_028823_p59 | hypothetical protein | phrog_2078 | unknown function | unknown function | 1 | 40462 | 40617 |
| YP_009200664.1 | NC_028823_p37 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30277 | 30696 |
| YP_009200702.1 | NC_028823_p75 | hypothetical protein | phrog_5921 | unknown function | unknown function | 1 | 46237 | 46389 |
| YP_009200633.1 | NC_028823_p6 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 5062 | 5883 |
| YP_009200650.1 | NC_028823_p23 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 24488 | 24781 |
| YP_009200729.1 | NC_028823_p102 | hypothetical protein | phrog_2057 | unknown function | unknown function | 1 | 56072 | 56233 |
| YP_009200630.1 | NC_028823_p3 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2255 | 3625 |
| YP_009200733.1 | NC_028823_p106 | HNH endonuclease | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 58515 | 58841 |
| YP_009200638.1 | NC_028823_p11 | major tail subunit | phrog_476 | major tail protein | tail | 1 | 7599 | 8408 |
| YP_009200723.1 | NC_028823_p96 | hypothetical protein | phrog_8604 | unknown function | unknown function | 1 | 54266 | 54775 |
| YP_009200707.1 | NC_028823_p80 | hypothetical protein | phrog_1943 | unknown function | unknown function | 1 | 49707 | 49901 |
| YP_009200709.1 | NC_028823_p82 | hypothetical protein | phrog_9840 | unknown function | unknown function | 1 | 50248 | 50379 |
| YP_009200636.1 | NC_028823_p9 | head-to-tail connector protein | phrog_1929 | head-tail connector protein | connector | 1 | 6781 | 7107 |
| YP_009200634.1 | NC_028823_p7 | head-to-tail connector protein | phrog_2377 | head-tail adaptor Ad1 | connector | 1 | 5883 | 6449 |
| YP_009200635.1 | NC_028823_p8 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 6446 | 6778 |
| YP_009200719.1 | NC_028823_p92 | hypothetical protein | phrog_4126 | unknown function | unknown function | 1 | 52963 | 53091 |
| YP_009200691.1 | NC_028823_p64 | RecA | phrog_1366 | unknown function | unknown function | 1 | 41716 | 42693 |
| YP_009200708.1 | NC_028823_p81 | hypothetical protein | phrog_3032 | unknown function | unknown function | 1 | 49898 | 50251 |
| YP_009200648.1 | NC_028823_p21 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 23745 | 24176 |
| YP_009200669.1 | NC_028823_p42 | HTH domain protein | phrog_6267 | transcriptional repressor | transcription regulation | 1 | 33964 | 34269 |
| YP_009200698.1 | NC_028823_p71 | hypothetical protein | phrog_1311 | unknown function | unknown function | 1 | 44507 | 44659 |
| YP_009200656.1 | NC_028823_p29 | holin | phrog_443 | holin | lysis | 1 | 27603 | 27836 |
| YP_009200657.1 | NC_028823_p30 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 27833 | 28207 |
| YP_009200695.1 | NC_028823_p68 | hypothetical protein | phrog_2704 | unknown function | unknown function | 1 | 43509 | 43658 |
| YP_009200667.1 | NC_028823_p40 | hypothetical protein | phrog_1948 | unknown function | unknown function | -1 | 32565 | 33017 |
| YP_009200663.1 | NC_028823_p36 | hypothetical protein | phrog_357 | transcriptional repressor | transcription regulation | -1 | 29711 | 30223 |
| YP_009200699.1 | NC_028823_p72 | hypothetical protein | phrog_2259 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 44668 | 45300 |
| YP_009200684.1 | NC_028823_p57 | hypothetical protein | phrog_2096 | unknown function | unknown function | 1 | 39600 | 40100 |
| YP_009200693.1 | NC_028823_p66 | hypothetical protein | phrog_6938 | unknown function | unknown function | 1 | 43049 | 43411 |
| YP_009200714.1 | NC_028823_p87 | hypothetical protein | phrog_1901 | unknown function | unknown function | 1 | 51633 | 51914 |
| YP_009200674.1 | NC_028823_p47 | hypothetical protein | phrog_1840 | excisionase | integration and excision | 1 | 36374 | 36634 |
| YP_009200666.1 | NC_028823_p39 | integrase | phrog_1 | integrase | integration and excision | 1 | 31381 | 32499 |
| YP_009200680.1 | NC_028823_p53 | hypothetical protein | phrog_1797 | unknown function | unknown function | 1 | 37987 | 38499 |
| YP_009200670.1 | NC_028823_p43 | hypothetical protein | phrog_15279 | unknown function | unknown function | 1 | 34287 | 35264 |
| YP_009200683.1 | NC_028823_p56 | WhiB | phrog_1333 | unknown function | unknown function | 1 | 39193 | 39603 |
| YP_009200689.1 | NC_028823_p62 | hypothetical protein | phrog_2632 | unknown function | unknown function | 1 | 40980 | 41258 |
| YP_009200660.1 | NC_028823_p33 | hypothetical protein | phrog_8186 | unknown function | unknown function | 1 | 29257 | 29370 |
| YP_009200730.1 | NC_028823_p103 | glycosyltransferase | phrog_1579 | glycosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 56250 | 57686 |
| YP_009200652.1 | NC_028823_p25 | hypothetical protein | phrog_1172 | unknown function | unknown function | 1 | 24931 | 25083 |
| YP_009200637.1 | NC_028823_p10 | head-to-tail connector protein | phrog_813 | head-tail adaptor | connector | 1 | 7097 | 7504 |
| YP_009200642.1 | NC_028823_p15 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 13028 | 14737 |
| YP_009200731.1 | NC_028823_p104 | hypothetical protein | phrog_1693 | unknown function | unknown function | 1 | 57689 | 57895 |
| YP_009200706.1 | NC_028823_p79 | hypothetical protein | phrog_7196 | unknown function | unknown function | 1 | 49519 | 49710 |
| YP_009200675.1 | NC_028823_p48 | hypothetical protein | phrog_18910 | unknown function | unknown function | 1 | 36631 | 36861 |
| YP_009200639.1 | NC_028823_p12 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 8545 | 9481 |
| YP_009200649.1 | NC_028823_p22 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 24173 | 24352 |
| YP_009200717.1 | NC_028823_p90 | hypothetical protein | phrog_1545 | unknown function | unknown function | 1 | 52437 | 52577 |
| YP_009200645.1 | NC_028823_p18 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 17398 | 19890 |
| YP_009200705.1 | NC_028823_p78 | hypothetical protein | phrog_2447 | replication initiation protein | DNA, RNA and nucleotide metabolism | 1 | 48531 | 49382 |
| YP_009200653.1 | NC_028823_p26 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 25134 | 25388 |
| YP_009200685.1 | NC_028823_p58 | HTH binding domain protein | phrog_664 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 40097 | 40462 |
| YP_009200679.1 | NC_028823_p52 | hypothetical protein | phrog_3381 | unknown function | unknown function | 1 | 37865 | 38041 |
| YP_009200644.1 | NC_028823_p17 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 16553 | 17401 |
| YP_009200671.1 | NC_028823_p44 | hypothetical protein | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 35261 | 36070 |
| YP_009200716.1 | NC_028823_p89 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 52261 | 52440 |
| YP_009200632.1 | NC_028823_p5 | scaffold protein | phrog_2592 | head scaffolding protein | head and packaging | 1 | 4393 | 5043 |
| YP_009200725.1 | NC_028823_p98 | hypothetical protein | phrog_1869 | unknown function | unknown function | 1 | 55063 | 55227 |
| YP_009200646.1 | NC_028823_p19 | D-ala-D-ala-carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 19887 | 22733 |
| YP_009200732.1 | NC_028823_p105 | glycosyltransferase | phrog_854 | glucosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57892 | 58515 |
| YP_009200694.1 | NC_028823_p67 | hypothetical protein | phrog_6573 | unknown function | unknown function | 1 | 43408 | 43512 |
| YP_009200682.1 | NC_028823_p55 | hypothetical protein | phrog_658 | unknown function | unknown function | 1 | 38855 | 39202 |
| YP_009200704.1 | NC_028823_p77 | hypothetical protein | phrog_2451 | unknown function | unknown function | 1 | 48393 | 48527 |
| YP_009200700.1 | NC_028823_p73 | hypothetical protein | phrog_2060 | DNA methyltransferase | other | 1 | 45463 | 45828 |
| YP_009200711.1 | NC_028823_p84 | hypothetical protein | phrog_647 | unknown function | unknown function | 1 | 50621 | 50905 |