Genomic map of Streptomyces phage Lannister (NC_028827)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028827
Definition
Streptomyces phage Lannister, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus.
DB of origin
REFSEQ
Length
50165
Host Name
Streptomyces venezuelae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
73
%GC
65.74
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009200943.1 NC_028827_p3 HNH endonuclease phrog_333 HNH endonuclease DNA, RNA and nucleotide metabolism 1 743 1054
YP_009201002.1 NC_028827_p62 hypothetical protein phrog_4785 unknown function unknown function -1 44196 44501
YP_009200986.1 NC_028827_p46 hypothetical protein phrog_1340 unknown function unknown function 1 31432 31791
YP_009200970.1 NC_028827_p30 hypothetical protein phrog_4061 unknown function unknown function -1 23273 23548
YP_009200987.1 NC_028827_p47 transcriptional regulator phrog_3512 sigma factor transcription regulation 1 31792 32193
YP_009200978.1 NC_028827_p38 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 28076 28438
YP_009200954.1 NC_028827_p14 hypothetical protein phrog_321 tail completion or Neck1 protein connector 1 9166 9564
YP_009201005.1 NC_028827_p65 hypothetical protein phrog_3908 unknown function unknown function -1 45597 45800
YP_009200990.1 NC_028827_p50 hypothetical protein phrog_11213 unknown function unknown function -1 34736 34909
YP_009200988.1 NC_028827_p48 hypothetical protein phrog_4123 unknown function unknown function 1 32190 32480
YP_009201001.1 NC_028827_p61 hypothetical protein phrog_34413 unknown function unknown function -1 43826 44098
YP_009200951.1 NC_028827_p11 major capsid protein phrog_283 major head protein head and packaging 1 7235 8308
YP_009201008.1 NC_028827_p68 hypothetical protein phrog_2355 unknown function unknown function -1 46589 47002
YP_009200972.1 NC_028827_p32 hypothetical protein phrog_5250 unknown function unknown function 1 24234 24539
YP_009200964.1 NC_028827_p24 hypothetical protein singleton unknown function unknown function 1 19238 19654
YP_009200944.1 NC_028827_p4 hypothetical protein phrog_3555 unknown function unknown function 1 1409 1669
YP_009201007.1 NC_028827_p67 hypothetical protein phrog_6619 unknown function unknown function -1 46341 46592
YP_009200980.1 NC_028827_p40 DNA primase phrog_360 DNA primase DNA, RNA and nucleotide metabolism 1 28575 29006
YP_009200995.1 NC_028827_p55 hypothetical protein phrog_3424 unknown function unknown function -1 41430 41666
YP_009200968.1 NC_028827_p28 endolysin phrog_1493 endolysin lysis 1 22046 22999
YP_009200973.1 NC_028827_p33 hypothetical protein phrog_466 exonuclease DNA, RNA and nucleotide metabolism 1 24536 25504
YP_009200957.1 NC_028827_p17 tail assembly chaperone phrog_978 tail assembly chaperone tail 1 10954 11666
YP_009200969.1 NC_028827_p29 hypothetical protein phrog_4092 unknown function unknown function 1 22999 23220
YP_009200958.1 NC_028827_p18 tail assembly chaperone phrog_330 tail assembly chaperone tail 1 10954 11277
YP_009200989.1 NC_028827_p49 ribonucleotide reductase phrog_367 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 32582 34672
YP_009200963.1 NC_028827_p23 hypothetical protein phrog_4013 unknown function unknown function 1 17377 19200
YP_009201012.1 NC_028827_p72 hypothetical protein phrog_4485 unknown function unknown function -1 48714 48875
YP_009201006.1 NC_028827_p66 hypothetical protein phrog_4239 unknown function unknown function -1 45803 46222
YP_009200982.1 NC_028827_p42 hypothetical protein phrog_4022 unknown function unknown function 1 29502 29852
YP_009200946.1 NC_028827_p6 hypothetical protein phrog_226 minor tail protein tail 1 1938 2363
YP_009200949.1 NC_028827_p9 hypothetical protein phrog_193 head maturation protease head and packaging 1 5493 6605
YP_009200975.1 NC_028827_p35 hypothetical protein phrog_1288 unknown function unknown function 1 26214 26651
YP_009201010.1 NC_028827_p70 hypothetical protein phrog_4313 unknown function unknown function -1 47256 48086
YP_009200948.1 NC_028827_p8 portal protein phrog_104 portal protein head and packaging 1 4063 5496
YP_009200965.1 NC_028827_p25 hypothetical protein phrog_4817 unknown function unknown function 1 19692 20201
YP_009200999.1 NC_028827_p59 hypothetical protein phrog_3991 unknown function unknown function -1 43193 43435
YP_009200985.1 NC_028827_p45 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 30215 31405
YP_009201003.1 NC_028827_p63 hypothetical protein phrog_4867 unknown function unknown function -1 44588 44944
YP_009200947.1 NC_028827_p7 terminase large subunit phrog_9 terminase large subunit head and packaging 1 2384 4030
YP_009200961.1 NC_028827_p21 hypothetical protein phrog_538 minor tail protein tail 1 15861 17075
YP_009200974.1 NC_028827_p34 hypothetical protein phrog_3912 unknown function unknown function 1 25631 26146
YP_009201013.1 NC_028827_p73 hypothetical protein phrog_2563 unknown function unknown function -1 48961 49338
YP_009200992.1 NC_028827_p52 ThyX phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism -1 36773 37489
YP_009200971.1 NC_028827_p31 immunity repressor phrog_3929 transcriptional repressor transcription regulation 1 23641 24093
YP_009200959.1 NC_028827_p19 tapemeasure phrog_305 tail length tape measure protein tail 1 11670 14996
YP_009200941.1 NC_028827_p1 hypothetical protein phrog_4207 unknown function unknown function -1 103 273
YP_009200977.1 NC_028827_p37 DnaB-like helicase phrog_243 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 27252 28007
YP_009200991.1 NC_028827_p51 serine integrase phrog_95 integrase integration and excision 1 35058 36647
YP_009200952.1 NC_028827_p12 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 8385 8834
YP_009200956.1 NC_028827_p16 hypothetical protein phrog_117 major tail protein tail 1 10084 10839
YP_009200960.1 NC_028827_p20 hypothetical protein phrog_33 distal tail protein Dit tail 1 15000 15857
YP_009200942.1 NC_028827_p2 hypothetical protein singleton unknown function unknown function 1 327 533
YP_009200993.1 NC_028827_p53 hypothetical protein phrog_4071 unknown function unknown function -1 37486 37755
YP_009200996.1 NC_028827_p56 hypothetical protein phrog_3965 unknown function unknown function -1 41681 42112
YP_009201004.1 NC_028827_p64 HNH domain protein phrog_4842 HNH endonuclease DNA, RNA and nucleotide metabolism -1 45032 45496
YP_009200976.1 NC_028827_p36 dCMP deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 26707 27195
YP_009200955.1 NC_028827_p15 hypothetical protein phrog_123 tail terminator connector 1 9564 10067
YP_009200994.1 NC_028827_p54 DNA polymerase III subunit alpha phrog_405 DNA polymerase DNA, RNA and nucleotide metabolism -1 37954 41433
YP_009201009.1 NC_028827_p69 hypothetical protein phrog_4275 unknown function unknown function -1 47024 47155
YP_009200953.1 NC_028827_p13 head-tail adaptor phrog_320 head closure Hc1 connector 1 8831 9166
YP_009200984.1 NC_028827_p44 hypothetical protein phrog_3979 unknown function unknown function 1 30004 30222
YP_009200967.1 NC_028827_p27 hypothetical protein phrog_3534 unknown function unknown function 1 21693 21974
YP_009200997.1 NC_028827_p57 hypothetical protein phrog_4024 unknown function unknown function -1 42196 42573
YP_009200945.1 NC_028827_p5 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 1675 1923
YP_009200979.1 NC_028827_p39 hypothetical protein singleton unknown function unknown function 1 28435 28578
YP_009200950.1 NC_028827_p10 scaffold protein phrog_233 head scaffolding protein head and packaging 1 6609 7163
YP_009201000.1 NC_028827_p60 hypothetical protein phrog_9416 unknown function unknown function -1 43432 43737
YP_009201011.1 NC_028827_p71 hypothetical protein phrog_3994 unknown function unknown function -1 48200 48622
YP_009200998.1 NC_028827_p58 dNMP kinase phrog_139 deoxynucleoside monophosphate kinase other -1 42588 43196
YP_009200962.1 NC_028827_p22 hypothetical protein phrog_1276 unknown function unknown function 1 17079 17375
YP_009200983.1 NC_028827_p43 hypothetical protein phrog_6217 unknown function unknown function 1 29849 30007
YP_009200981.1 NC_028827_p41 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 29083 29505
YP_009200966.1 NC_028827_p26 hypothetical protein phrog_988 tail protein tail 1 20278 21624