| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028827 |
Definition |
Streptomyces phage Lannister, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Arquatrovirinae; Likavirus. |
DB of origin |
REFSEQ |
Length |
50165 |
Host Name |
Streptomyces venezuelae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
73 |
%GC |
65.74 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009200943.1 | NC_028827_p3 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 743 | 1054 |
| YP_009201002.1 | NC_028827_p62 | hypothetical protein | phrog_4785 | unknown function | unknown function | -1 | 44196 | 44501 |
| YP_009200986.1 | NC_028827_p46 | hypothetical protein | phrog_1340 | unknown function | unknown function | 1 | 31432 | 31791 |
| YP_009200970.1 | NC_028827_p30 | hypothetical protein | phrog_4061 | unknown function | unknown function | -1 | 23273 | 23548 |
| YP_009200987.1 | NC_028827_p47 | transcriptional regulator | phrog_3512 | sigma factor | transcription regulation | 1 | 31792 | 32193 |
| YP_009200978.1 | NC_028827_p38 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 28076 | 28438 |
| YP_009200954.1 | NC_028827_p14 | hypothetical protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 9166 | 9564 |
| YP_009201005.1 | NC_028827_p65 | hypothetical protein | phrog_3908 | unknown function | unknown function | -1 | 45597 | 45800 |
| YP_009200990.1 | NC_028827_p50 | hypothetical protein | phrog_11213 | unknown function | unknown function | -1 | 34736 | 34909 |
| YP_009200988.1 | NC_028827_p48 | hypothetical protein | phrog_4123 | unknown function | unknown function | 1 | 32190 | 32480 |
| YP_009201001.1 | NC_028827_p61 | hypothetical protein | phrog_34413 | unknown function | unknown function | -1 | 43826 | 44098 |
| YP_009200951.1 | NC_028827_p11 | major capsid protein | phrog_283 | major head protein | head and packaging | 1 | 7235 | 8308 |
| YP_009201008.1 | NC_028827_p68 | hypothetical protein | phrog_2355 | unknown function | unknown function | -1 | 46589 | 47002 |
| YP_009200972.1 | NC_028827_p32 | hypothetical protein | phrog_5250 | unknown function | unknown function | 1 | 24234 | 24539 |
| YP_009200964.1 | NC_028827_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19238 | 19654 |
| YP_009200944.1 | NC_028827_p4 | hypothetical protein | phrog_3555 | unknown function | unknown function | 1 | 1409 | 1669 |
| YP_009201007.1 | NC_028827_p67 | hypothetical protein | phrog_6619 | unknown function | unknown function | -1 | 46341 | 46592 |
| YP_009200980.1 | NC_028827_p40 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 28575 | 29006 |
| YP_009200995.1 | NC_028827_p55 | hypothetical protein | phrog_3424 | unknown function | unknown function | -1 | 41430 | 41666 |
| YP_009200968.1 | NC_028827_p28 | endolysin | phrog_1493 | endolysin | lysis | 1 | 22046 | 22999 |
| YP_009200973.1 | NC_028827_p33 | hypothetical protein | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 24536 | 25504 |
| YP_009200957.1 | NC_028827_p17 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 10954 | 11666 |
| YP_009200969.1 | NC_028827_p29 | hypothetical protein | phrog_4092 | unknown function | unknown function | 1 | 22999 | 23220 |
| YP_009200958.1 | NC_028827_p18 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 10954 | 11277 |
| YP_009200989.1 | NC_028827_p49 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 32582 | 34672 |
| YP_009200963.1 | NC_028827_p23 | hypothetical protein | phrog_4013 | unknown function | unknown function | 1 | 17377 | 19200 |
| YP_009201012.1 | NC_028827_p72 | hypothetical protein | phrog_4485 | unknown function | unknown function | -1 | 48714 | 48875 |
| YP_009201006.1 | NC_028827_p66 | hypothetical protein | phrog_4239 | unknown function | unknown function | -1 | 45803 | 46222 |
| YP_009200982.1 | NC_028827_p42 | hypothetical protein | phrog_4022 | unknown function | unknown function | 1 | 29502 | 29852 |
| YP_009200946.1 | NC_028827_p6 | hypothetical protein | phrog_226 | minor tail protein | tail | 1 | 1938 | 2363 |
| YP_009200949.1 | NC_028827_p9 | hypothetical protein | phrog_193 | head maturation protease | head and packaging | 1 | 5493 | 6605 |
| YP_009200975.1 | NC_028827_p35 | hypothetical protein | phrog_1288 | unknown function | unknown function | 1 | 26214 | 26651 |
| YP_009201010.1 | NC_028827_p70 | hypothetical protein | phrog_4313 | unknown function | unknown function | -1 | 47256 | 48086 |
| YP_009200948.1 | NC_028827_p8 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 4063 | 5496 |
| YP_009200965.1 | NC_028827_p25 | hypothetical protein | phrog_4817 | unknown function | unknown function | 1 | 19692 | 20201 |
| YP_009200999.1 | NC_028827_p59 | hypothetical protein | phrog_3991 | unknown function | unknown function | -1 | 43193 | 43435 |
| YP_009200985.1 | NC_028827_p45 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 30215 | 31405 |
| YP_009201003.1 | NC_028827_p63 | hypothetical protein | phrog_4867 | unknown function | unknown function | -1 | 44588 | 44944 |
| YP_009200947.1 | NC_028827_p7 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2384 | 4030 |
| YP_009200961.1 | NC_028827_p21 | hypothetical protein | phrog_538 | minor tail protein | tail | 1 | 15861 | 17075 |
| YP_009200974.1 | NC_028827_p34 | hypothetical protein | phrog_3912 | unknown function | unknown function | 1 | 25631 | 26146 |
| YP_009201013.1 | NC_028827_p73 | hypothetical protein | phrog_2563 | unknown function | unknown function | -1 | 48961 | 49338 |
| YP_009200992.1 | NC_028827_p52 | ThyX | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 36773 | 37489 |
| YP_009200971.1 | NC_028827_p31 | immunity repressor | phrog_3929 | transcriptional repressor | transcription regulation | 1 | 23641 | 24093 |
| YP_009200959.1 | NC_028827_p19 | tapemeasure | phrog_305 | tail length tape measure protein | tail | 1 | 11670 | 14996 |
| YP_009200941.1 | NC_028827_p1 | hypothetical protein | phrog_4207 | unknown function | unknown function | -1 | 103 | 273 |
| YP_009200977.1 | NC_028827_p37 | DnaB-like helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 27252 | 28007 |
| YP_009200991.1 | NC_028827_p51 | serine integrase | phrog_95 | integrase | integration and excision | 1 | 35058 | 36647 |
| YP_009200952.1 | NC_028827_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8385 | 8834 |
| YP_009200956.1 | NC_028827_p16 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 10084 | 10839 |
| YP_009200960.1 | NC_028827_p20 | hypothetical protein | phrog_33 | distal tail protein Dit | tail | 1 | 15000 | 15857 |
| YP_009200942.1 | NC_028827_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 327 | 533 |
| YP_009200993.1 | NC_028827_p53 | hypothetical protein | phrog_4071 | unknown function | unknown function | -1 | 37486 | 37755 |
| YP_009200996.1 | NC_028827_p56 | hypothetical protein | phrog_3965 | unknown function | unknown function | -1 | 41681 | 42112 |
| YP_009201004.1 | NC_028827_p64 | HNH domain protein | phrog_4842 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 45032 | 45496 |
| YP_009200976.1 | NC_028827_p36 | dCMP deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 26707 | 27195 |
| YP_009200955.1 | NC_028827_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 9564 | 10067 |
| YP_009200994.1 | NC_028827_p54 | DNA polymerase III subunit alpha | phrog_405 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 37954 | 41433 |
| YP_009201009.1 | NC_028827_p69 | hypothetical protein | phrog_4275 | unknown function | unknown function | -1 | 47024 | 47155 |
| YP_009200953.1 | NC_028827_p13 | head-tail adaptor | phrog_320 | head closure Hc1 | connector | 1 | 8831 | 9166 |
| YP_009200984.1 | NC_028827_p44 | hypothetical protein | phrog_3979 | unknown function | unknown function | 1 | 30004 | 30222 |
| YP_009200967.1 | NC_028827_p27 | hypothetical protein | phrog_3534 | unknown function | unknown function | 1 | 21693 | 21974 |
| YP_009200997.1 | NC_028827_p57 | hypothetical protein | phrog_4024 | unknown function | unknown function | -1 | 42196 | 42573 |
| YP_009200945.1 | NC_028827_p5 | thioredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 1675 | 1923 |
| YP_009200979.1 | NC_028827_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28435 | 28578 |
| YP_009200950.1 | NC_028827_p10 | scaffold protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 6609 | 7163 |
| YP_009201000.1 | NC_028827_p60 | hypothetical protein | phrog_9416 | unknown function | unknown function | -1 | 43432 | 43737 |
| YP_009201011.1 | NC_028827_p71 | hypothetical protein | phrog_3994 | unknown function | unknown function | -1 | 48200 | 48622 |
| YP_009200998.1 | NC_028827_p58 | dNMP kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 42588 | 43196 |
| YP_009200962.1 | NC_028827_p22 | hypothetical protein | phrog_1276 | unknown function | unknown function | 1 | 17079 | 17375 |
| YP_009200983.1 | NC_028827_p43 | hypothetical protein | phrog_6217 | unknown function | unknown function | 1 | 29849 | 30007 |
| YP_009200981.1 | NC_028827_p41 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 29083 | 29505 |
| YP_009200966.1 | NC_028827_p26 | hypothetical protein | phrog_988 | tail protein | tail | 1 | 20278 | 21624 |