Genomic map of Lactobacillus phage iA2 (NC_028830)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
NC_028830
Definition
Lactobacillus phage iA2, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae.
DB of origin
REFSEQ
Length
34155
Host Name
Lactobacillus paracasei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
50
%GC
45.63
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
YP_009201506.1 NC_028830_p13 hypothetical protein phrog_8856 unknown function unknown function 1 8136 8318
YP_009201514.1 NC_028830_p21 hypothetical protein phrog_12789 unknown function unknown function 1 17904 18092
YP_009201510.1 NC_028830_p17 hypothetical protein phrog_1401 unknown function unknown function 1 16444 16869
YP_009201527.1 NC_028830_p34 hypothetical protein phrog_25481 unknown function unknown function 1 26308 26400
YP_009201518.1 NC_028830_p25 hypothetical protein phrog_27728 unknown function unknown function -1 21904 22335
YP_009201498.1 NC_028830_p5 major capsid protein phrog_10 major head protein head and packaging 1 4121 5350
YP_009201537.1 NC_028830_p44 hypothetical protein phrog_13069 unknown function unknown function 1 31053 31400
YP_009201531.1 NC_028830_p38 DNA repair protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 27691 28578
YP_009201525.1 NC_028830_p32 hypothetical protein phrog_27278 unknown function unknown function 1 25763 25975
YP_009201523.1 NC_028830_p30 hypothetical protein singleton unknown function unknown function 1 24839 25036
YP_009201495.1 NC_028830_p2 terminase phrog_9 terminase large subunit head and packaging 1 447 2177
YP_009201541.1 NC_028830_p48 hypothetical protein phrog_2275 unknown function unknown function 1 32699 33022
YP_009201497.1 NC_028830_p4 ATP-dependent Clp protease phrog_94 head maturation protease head and packaging 1 3403 4116
YP_009201505.1 NC_028830_p12 hypothetical protein phrog_4888 tail assembly chaperone tail 1 7711 8076
YP_009201528.1 NC_028830_p35 hypothetical protein phrog_36466 unknown function unknown function 1 26397 26609
YP_009201532.1 NC_028830_p39 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 28587 28832
YP_009201496.1 NC_028830_p3 portal protein phrog_12 portal protein head and packaging 1 2196 3431
YP_009201536.1 NC_028830_p43 hypothetical protein phrog_2044 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism 1 30800 31084
YP_009201533.1 NC_028830_p40 DnaD domain-containing protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 28837 29682
YP_009201511.1 NC_028830_p18 hypothetical protein phrog_2566 unknown function unknown function 1 16872 17141
YP_009201530.1 NC_028830_p37 hypothetical protein phrog_29976 unknown function unknown function 1 27497 27691
YP_009201507.1 NC_028830_p14 tape-measure phrog_58 tail length tape measure protein tail 1 8338 11310
YP_009201501.1 NC_028830_p8 head-tail adaptor phrog_4014 head-tail adaptor connector 1 5951 6289
YP_009201539.1 NC_028830_p46 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 31988 32407
YP_009201526.1 NC_028830_p33 hypothetical protein phrog_823 unknown function unknown function 1 26084 26308
YP_009201502.1 NC_028830_p9 hypothetical protein phrog_78 tail terminator connector 1 6273 6602
YP_009201520.1 NC_028830_p27 hypothetical protein phrog_37650 unknown function unknown function -1 22891 23184
YP_009201529.1 NC_028830_p36 recombinase phrog_434 RecE-like recombination exonuclease DNA, RNA and nucleotide metabolism 1 26619 27494
YP_009201500.1 NC_028830_p7 hypothetical protein phrog_4609 unknown function unknown function 1 5686 6012
YP_009201540.1 NC_028830_p47 hypothetical protein phrog_36404 unknown function unknown function 1 32412 32675
YP_009201538.1 NC_028830_p45 hypothetical protein phrog_1891 HNH endonuclease DNA, RNA and nucleotide metabolism 1 31393 31971
YP_009201534.1 NC_028830_p41 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 29720 30541
YP_009201535.1 NC_028830_p42 hypothetical protein phrog_22102 unknown function unknown function 1 30538 30837
YP_009201513.1 NC_028830_p20 holin phrog_10091 holin lysis 1 17470 17904
YP_009201521.1 NC_028830_p28 hypothetical protein phrog_87 metallo-protease other -1 23368 24228
YP_009201542.1 NC_028830_p49 sigma-70 RNA polymerase phrog_36 transcriptional regulator transcription regulation 1 33101 33550
YP_009201503.1 NC_028830_p10 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 6592 6975
YP_009201512.1 NC_028830_p19 hypothetical protein phrog_1009 unknown function unknown function 1 17187 17480
YP_009201499.1 NC_028830_p6 hypothetical protein phrog_1696 major tail protein tail 1 5424 5672
YP_009201517.1 NC_028830_p24 Abi family protein phrog_2158 abortive infection resistance protein moron, auxiliary metabolic gene and host takeover -1 20692 21759
YP_009201509.1 NC_028830_p16 tail protein phrog_1330 tail protein tail 1 12009 16415
YP_009201524.1 NC_028830_p31 antirepressor phrog_63 anti-repressor Ant transcription regulation 1 25033 25755
YP_009201522.1 NC_028830_p29 transcriptional regulator phrog_8 transcriptional regulator transcription regulation -1 24215 24583
YP_009201504.1 NC_028830_p11 major tail protein phrog_88 major tail protein tail 1 6987 7634
YP_009201515.1 NC_028830_p22 tail lysin phrog_22474 endolysin lysis 1 18079 19053
YP_009201494.1 NC_028830_p1 hypothetical protein phrog_1066 unknown function unknown function 1 58 444
YP_009201516.1 NC_028830_p23 hypothetical protein phrog_1 integrase integration and excision -1 19435 20574
YP_009201508.1 NC_028830_p15 tail protein phrog_33 distal tail protein Dit tail 1 11317 12012
YP_009201519.1 NC_028830_p26 hypothetical protein phrog_31220 unknown function unknown function -1 22405 22887
YP_009201543.1 NC_028830_p50 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 33775 34155