| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028830 |
Definition |
Lactobacillus phage iA2, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae. |
DB of origin |
REFSEQ |
Length |
34155 |
Host Name |
Lactobacillus paracasei |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
45.63 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009201506.1 | NC_028830_p13 | hypothetical protein | phrog_8856 | unknown function | unknown function | 1 | 8136 | 8318 |
| YP_009201514.1 | NC_028830_p21 | hypothetical protein | phrog_12789 | unknown function | unknown function | 1 | 17904 | 18092 |
| YP_009201510.1 | NC_028830_p17 | hypothetical protein | phrog_1401 | unknown function | unknown function | 1 | 16444 | 16869 |
| YP_009201527.1 | NC_028830_p34 | hypothetical protein | phrog_25481 | unknown function | unknown function | 1 | 26308 | 26400 |
| YP_009201518.1 | NC_028830_p25 | hypothetical protein | phrog_27728 | unknown function | unknown function | -1 | 21904 | 22335 |
| YP_009201498.1 | NC_028830_p5 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 4121 | 5350 |
| YP_009201537.1 | NC_028830_p44 | hypothetical protein | phrog_13069 | unknown function | unknown function | 1 | 31053 | 31400 |
| YP_009201531.1 | NC_028830_p38 | DNA repair protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 27691 | 28578 |
| YP_009201525.1 | NC_028830_p32 | hypothetical protein | phrog_27278 | unknown function | unknown function | 1 | 25763 | 25975 |
| YP_009201523.1 | NC_028830_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24839 | 25036 |
| YP_009201495.1 | NC_028830_p2 | terminase | phrog_9 | terminase large subunit | head and packaging | 1 | 447 | 2177 |
| YP_009201541.1 | NC_028830_p48 | hypothetical protein | phrog_2275 | unknown function | unknown function | 1 | 32699 | 33022 |
| YP_009201497.1 | NC_028830_p4 | ATP-dependent Clp protease | phrog_94 | head maturation protease | head and packaging | 1 | 3403 | 4116 |
| YP_009201505.1 | NC_028830_p12 | hypothetical protein | phrog_4888 | tail assembly chaperone | tail | 1 | 7711 | 8076 |
| YP_009201528.1 | NC_028830_p35 | hypothetical protein | phrog_36466 | unknown function | unknown function | 1 | 26397 | 26609 |
| YP_009201532.1 | NC_028830_p39 | transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 28587 | 28832 |
| YP_009201496.1 | NC_028830_p3 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2196 | 3431 |
| YP_009201536.1 | NC_028830_p43 | hypothetical protein | phrog_2044 | RNA polymerase beta subunit | DNA, RNA and nucleotide metabolism | 1 | 30800 | 31084 |
| YP_009201533.1 | NC_028830_p40 | DnaD domain-containing protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 28837 | 29682 |
| YP_009201511.1 | NC_028830_p18 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 16872 | 17141 |
| YP_009201530.1 | NC_028830_p37 | hypothetical protein | phrog_29976 | unknown function | unknown function | 1 | 27497 | 27691 |
| YP_009201507.1 | NC_028830_p14 | tape-measure | phrog_58 | tail length tape measure protein | tail | 1 | 8338 | 11310 |
| YP_009201501.1 | NC_028830_p8 | head-tail adaptor | phrog_4014 | head-tail adaptor | connector | 1 | 5951 | 6289 |
| YP_009201539.1 | NC_028830_p46 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 31988 | 32407 |
| YP_009201526.1 | NC_028830_p33 | hypothetical protein | phrog_823 | unknown function | unknown function | 1 | 26084 | 26308 |
| YP_009201502.1 | NC_028830_p9 | hypothetical protein | phrog_78 | tail terminator | connector | 1 | 6273 | 6602 |
| YP_009201520.1 | NC_028830_p27 | hypothetical protein | phrog_37650 | unknown function | unknown function | -1 | 22891 | 23184 |
| YP_009201529.1 | NC_028830_p36 | recombinase | phrog_434 | RecE-like recombination exonuclease | DNA, RNA and nucleotide metabolism | 1 | 26619 | 27494 |
| YP_009201500.1 | NC_028830_p7 | hypothetical protein | phrog_4609 | unknown function | unknown function | 1 | 5686 | 6012 |
| YP_009201540.1 | NC_028830_p47 | hypothetical protein | phrog_36404 | unknown function | unknown function | 1 | 32412 | 32675 |
| YP_009201538.1 | NC_028830_p45 | hypothetical protein | phrog_1891 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 31393 | 31971 |
| YP_009201534.1 | NC_028830_p41 | DNA replication protein | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 29720 | 30541 |
| YP_009201535.1 | NC_028830_p42 | hypothetical protein | phrog_22102 | unknown function | unknown function | 1 | 30538 | 30837 |
| YP_009201513.1 | NC_028830_p20 | holin | phrog_10091 | holin | lysis | 1 | 17470 | 17904 |
| YP_009201521.1 | NC_028830_p28 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 23368 | 24228 |
| YP_009201542.1 | NC_028830_p49 | sigma-70 RNA polymerase | phrog_36 | transcriptional regulator | transcription regulation | 1 | 33101 | 33550 |
| YP_009201503.1 | NC_028830_p10 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 6592 | 6975 |
| YP_009201512.1 | NC_028830_p19 | hypothetical protein | phrog_1009 | unknown function | unknown function | 1 | 17187 | 17480 |
| YP_009201499.1 | NC_028830_p6 | hypothetical protein | phrog_1696 | major tail protein | tail | 1 | 5424 | 5672 |
| YP_009201517.1 | NC_028830_p24 | Abi family protein | phrog_2158 | abortive infection resistance protein | moron, auxiliary metabolic gene and host takeover | -1 | 20692 | 21759 |
| YP_009201509.1 | NC_028830_p16 | tail protein | phrog_1330 | tail protein | tail | 1 | 12009 | 16415 |
| YP_009201524.1 | NC_028830_p31 | antirepressor | phrog_63 | anti-repressor Ant | transcription regulation | 1 | 25033 | 25755 |
| YP_009201522.1 | NC_028830_p29 | transcriptional regulator | phrog_8 | transcriptional regulator | transcription regulation | -1 | 24215 | 24583 |
| YP_009201504.1 | NC_028830_p11 | major tail protein | phrog_88 | major tail protein | tail | 1 | 6987 | 7634 |
| YP_009201515.1 | NC_028830_p22 | tail lysin | phrog_22474 | endolysin | lysis | 1 | 18079 | 19053 |
| YP_009201494.1 | NC_028830_p1 | hypothetical protein | phrog_1066 | unknown function | unknown function | 1 | 58 | 444 |
| YP_009201516.1 | NC_028830_p23 | hypothetical protein | phrog_1 | integrase | integration and excision | -1 | 19435 | 20574 |
| YP_009201508.1 | NC_028830_p15 | tail protein | phrog_33 | distal tail protein Dit | tail | 1 | 11317 | 12012 |
| YP_009201519.1 | NC_028830_p26 | hypothetical protein | phrog_31220 | unknown function | unknown function | -1 | 22405 | 22887 |
| YP_009201543.1 | NC_028830_p50 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33775 | 34155 |