| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
NC_028832 |
Definition |
Mycobacteriophage Omnicron, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
REFSEQ |
Length |
61511 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
95 |
%GC |
64.03 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| YP_009201690.1 | NC_028832_p57 | hypothetical protein | phrog_1498 | unknown function | unknown function | 1 | 40537 | 40707 |
| YP_009201649.1 | NC_028832_p16 | tail assembly chaperone | phrog_1326 | tail assembly chaperone | tail | 1 | 10271 | 11151 |
| YP_009201714.1 | NC_028832_p81 | RtcB | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 54503 | 55708 |
| YP_009201704.1 | NC_028832_p71 | hypothetical protein | phrog_38067 | unknown function | unknown function | 1 | 49595 | 49906 |
| YP_009201655.1 | NC_028832_p22 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 18088 | 18597 |
| YP_009201634.1 | NC_028832_p1 | hypothetical protein | phrog_10556 | unknown function | unknown function | 1 | 53 | 244 |
| YP_009201715.1 | NC_028832_p82 | hypothetical protein | phrog_3167 | unknown function | unknown function | 1 | 55712 | 56080 |
| YP_009201640.1 | NC_028832_p7 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 4366 | 5994 |
| YP_009201697.1 | NC_028832_p64 | hypothetical protein | phrog_10696 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43198 | 43689 |
| YP_009201669.1 | NC_028832_p36 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 29239 | 29613 |
| YP_009201676.1 | NC_028832_p43 | hypothetical protein | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 33529 | 33930 |
| YP_009201643.1 | NC_028832_p10 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6973 | 7905 |
| YP_009201673.1 | NC_028832_p40 | integrase | phrog_95 | integrase | integration and excision | 1 | 30937 | 32343 |
| YP_009201644.1 | NC_028832_p11 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 8147 | 8530 |
| YP_009201701.1 | NC_028832_p68 | RusA | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 48055 | 48420 |
| YP_009201670.1 | NC_028832_p37 | hypothetical protein | phrog_5633 | unknown function | unknown function | 1 | 29613 | 29795 |
| YP_009201672.1 | NC_028832_p39 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 30280 | 30720 |
| YP_009201668.1 | NC_028832_p35 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 29081 | 29239 |
| YP_009201684.1 | NC_028832_p51 | hypothetical protein | phrog_9124 | unknown function | unknown function | 1 | 37912 | 38142 |
| YP_009201647.1 | NC_028832_p14 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 9133 | 9555 |
| YP_009201692.1 | NC_028832_p59 | hypothetical protein | phrog_10500 | unknown function | unknown function | 1 | 41561 | 41794 |
| YP_009201654.1 | NC_028832_p21 | minor tail subunit | phrog_20962 | minor tail protein | tail | 1 | 17554 | 18087 |
| YP_009201719.1 | NC_028832_p86 | hypothetical protein | phrog_980 | unknown function | unknown function | 1 | 57578 | 57886 |
| YP_009201682.1 | NC_028832_p49 | DNA polymerase III | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 36355 | 37521 |
| YP_009201662.1 | NC_028832_p29 | lysin A | phrog_317 | endolysin | lysis | 1 | 24325 | 25953 |
| YP_009201694.1 | NC_028832_p61 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42057 | 42179 |
| YP_009201724.1 | NC_028832_p91 | hypothetical protein | phrog_7638 | unknown function | unknown function | 1 | 59184 | 59534 |
| YP_009201689.1 | NC_028832_p56 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40271 | 40540 |
| YP_009201695.1 | NC_028832_p62 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42235 | 42843 |
| YP_009201645.1 | NC_028832_p12 | head-to-tail connector protein | phrog_763 | head-tail adaptor | connector | 1 | 8530 | 8898 |
| YP_009201637.1 | NC_028832_p4 | hypothetical protein | phrog_1459 | terminase small subunit | head and packaging | 1 | 1158 | 1394 |
| YP_009201681.1 | NC_028832_p48 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 35732 | 36313 |
| YP_009201677.1 | NC_028832_p44 | hypothetical protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 34067 | 34414 |
| YP_009201698.1 | NC_028832_p65 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43686 | 44066 |
| YP_009201727.1 | NC_028832_p94 | hypothetical protein | phrog_10816 | unknown function | unknown function | 1 | 60898 | 61080 |
| YP_009201657.1 | NC_028832_p24 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 19679 | 19996 |
| YP_009201687.1 | NC_028832_p54 | hypothetical protein | phrog_10462 | unknown function | unknown function | 1 | 39295 | 39450 |
| YP_009201680.1 | NC_028832_p47 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 34963 | 35694 |
| YP_009201720.1 | NC_028832_p87 | hypothetical protein | phrog_3665 | unknown function | unknown function | 1 | 57883 | 58032 |
| YP_009201716.1 | NC_028832_p83 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 56077 | 56712 |
| YP_009201691.1 | NC_028832_p58 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40704 | 41564 |
| YP_009201700.1 | NC_028832_p67 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46282 | 47976 |
| YP_009201683.1 | NC_028832_p50 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 37572 | 37910 |
| YP_009201653.1 | NC_028832_p20 | minor tail subunit | phrog_110 | minor tail protein | tail | 1 | 16267 | 17478 |
| YP_009201651.1 | NC_028832_p18 | tapemeasure protein | phrog_971 | endolysin | lysis | 1 | 11169 | 15011 |
| YP_009201722.1 | NC_028832_p89 | hypothetical protein | phrog_9985 | unknown function | unknown function | 1 | 58318 | 58644 |
| YP_009201679.1 | NC_028832_p46 | hypothetical protein | phrog_11593 | unknown function | unknown function | 1 | 34689 | 34841 |
| YP_009201652.1 | NC_028832_p19 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 15090 | 16220 |
| YP_009201725.1 | NC_028832_p92 | hypothetical protein | phrog_10342 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 59815 | 60204 |
| YP_009201667.1 | NC_028832_p34 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27834 | 29048 |
| YP_009201696.1 | NC_028832_p63 | NrdH | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 42953 | 43201 |
| YP_009201642.1 | NC_028832_p9 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 6242 | 6898 |
| YP_009201656.1 | NC_028832_p23 | minor tail subunit | phrog_1565 | minor tail protein | tail | 1 | 18594 | 19679 |
| YP_009201678.1 | NC_028832_p45 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 34418 | 34609 |
| YP_009201658.1 | NC_028832_p25 | minor tail subunit | phrog_346 | minor tail protein | tail | 1 | 19980 | 22484 |
| YP_009201675.1 | NC_028832_p42 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 32570 | 33409 |
| YP_009201671.1 | NC_028832_p38 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 29782 | 30006 |
| YP_009201703.1 | NC_028832_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49348 | 49560 |
| YP_009201648.1 | NC_028832_p15 | major tail subunit | phrog_117 | major tail protein | tail | 1 | 9598 | 10209 |
| YP_009201702.1 | NC_028832_p69 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 48420 | 49313 |
| YP_009201685.1 | NC_028832_p52 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 38139 | 38417 |
| YP_009201666.1 | NC_028832_p33 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27596 | 27847 |
| YP_009201706.1 | NC_028832_p73 | DNA methylase | phrog_116 | DNA methyltransferase | other | 1 | 50751 | 51713 |
| YP_009201663.1 | NC_028832_p30 | lysin B | phrog_102 | endolysin | lysis | 1 | 25950 | 26807 |
| YP_009201638.1 | NC_028832_p5 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 1387 | 2814 |
| YP_009201708.1 | NC_028832_p75 | hypothetical protein | phrog_5035 | unknown function | unknown function | 1 | 52042 | 52290 |
| YP_009201711.1 | NC_028832_p78 | hypothetical protein | phrog_5288 | unknown function | unknown function | 1 | 53191 | 53457 |
| YP_009201693.1 | NC_028832_p60 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 41791 | 42003 |
| YP_009201726.1 | NC_028832_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60457 | 60687 |
| YP_009201712.1 | NC_028832_p79 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53454 | 53666 |
| YP_009201661.1 | NC_028832_p28 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23896 | 24297 |
| YP_009201686.1 | NC_028832_p53 | hypothetical protein | phrog_20769 | unknown function | unknown function | 1 | 38414 | 39298 |
| YP_009201664.1 | NC_028832_p31 | holin | phrog_565 | holin | lysis | 1 | 26804 | 27253 |
| YP_009201688.1 | NC_028832_p55 | hypothetical protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39478 | 40266 |
| YP_009201641.1 | NC_028832_p8 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5991 | 6191 |
| YP_009201713.1 | NC_028832_p80 | hypothetical protein | phrog_9980 | unknown function | unknown function | 1 | 53663 | 54343 |
| YP_009201728.1 | NC_028832_p95 | HNH endonuclease | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 61077 | 61382 |
| YP_009201723.1 | NC_028832_p90 | hypothetical protein | phrog_10190 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58646 | 59038 |
| YP_009201705.1 | NC_028832_p72 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 49903 | 50754 |
| YP_009201721.1 | NC_028832_p88 | hypothetical protein | phrog_19470 | unknown function | unknown function | 1 | 58146 | 58298 |
| YP_009201635.1 | NC_028832_p2 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 241 | 486 |
| YP_009201650.1 | NC_028832_p17 | tail assembly chaperone | phrog_1861 | unknown function | unknown function | 1 | 10271 | 10759 |
| YP_009201659.1 | NC_028832_p26 | hypothetical protein | phrog_10753 | unknown function | unknown function | 1 | 22494 | 22778 |
| YP_009201639.1 | NC_028832_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2826 | 4379 |
| YP_009201709.1 | NC_028832_p76 | hypothetical protein | phrog_3868 | unknown function | unknown function | 1 | 52284 | 52922 |
| YP_009201717.1 | NC_028832_p84 | hypothetical protein | phrog_16134 | unknown function | unknown function | 1 | 56705 | 56989 |
| YP_009201699.1 | NC_028832_p66 | DNA primase | phrog_10729 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44102 | 46285 |
| YP_009201660.1 | NC_028832_p27 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 22797 | 23876 |
| YP_009201665.1 | NC_028832_p32 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 27250 | 27609 |
| YP_009201718.1 | NC_028832_p85 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 56982 | 57587 |
| YP_009201707.1 | NC_028832_p74 | hypothetical protein | phrog_5135 | unknown function | unknown function | 1 | 51710 | 52045 |
| YP_009201646.1 | NC_028832_p13 | head-to-tail connector protein | phrog_387 | neck protein | connector | 1 | 8879 | 9136 |
| YP_009201636.1 | NC_028832_p3 | hypothetical protein | phrog_2293 | unknown function | unknown function | 1 | 483 | 713 |
| YP_009201674.1 | NC_028832_p41 | hypothetical protein | phrog_15740 | unknown function | unknown function | 1 | 32402 | 32542 |
| YP_009201710.1 | NC_028832_p77 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 52916 | 53194 |